ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 1e-59
2ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 190 2e-45
3dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 2e-45
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 184 1e-43
5dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 184 1e-43
6dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 184 1e-43
7ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 180 2e-42
8ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 180 2e-42
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
10dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
11ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
13dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
14dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
15ref|XM_473844.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
16emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 44 0.33
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
18emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.33
19emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 44 0.33
20ref|XM_468154.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
21gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
22gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
23gb|AC104082.3| Homo sapiens BAC clone RP11-570L13 from 4, comple... 42 1.3
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
25dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
26dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
27dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
28dbj|AK069780.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
29gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.3
30gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipie... 42 1.3
31ref|XM_466490.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
32ref|NM_191023.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
33gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
34gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
35gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
36gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
37gb|AY639147.1| Stizostedion vitreum vitreum genomic sequence 40 5.2
38emb|CT025236.2| Xenopus tropicalis finished cDNA, clone TEgg001e05 40 5.2
39gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete ... 40 5.2
40gb|AY130825.1| Phacus pleuronectes var. triquetra large subunit ... 40 5.2
41gb|AY130824.1| Phacus pleuronectes large subunit ribosomal RNA g... 40 5.2
42emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 40 5.2
43gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.2
44dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
47gb|AY741536.1| Pennisetum glaucum TEL1 gene, partial sequence 40 5.2
48dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.2
49dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
50dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
51dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
52emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 5.2
53dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
54gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
55emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.2
56emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.2
57dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.2 
>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
           insert sequence
          Length = 2975

 Score =  238 bits (120), Expect = 1e-59
 Identities = 276/328 (84%)
 Strand = Plus / Plus

                                                                       
Query: 63  cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 122
           |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 90  cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 149

                                                                       
Query: 123 cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 182
           ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 150 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 209

                                                                       
Query: 183 cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 242
           |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 210 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 269

                                                                       
Query: 243 cgccgagctcgccgtcgaccggtcctccatccgcttccaggactgggcgccgacggaggt 302
           ||||||||||||||||||| | |||||| ||||||||||||| | || |||  | |||||
Sbjct: 270 cgccgagctcgccgtcgacggatcctccgtccgcttccaggatttggtgccttccgaggt 329

                                                                       
Query: 303 ggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccgggagctgccccctcg 362
           |||||||||||||||||| |||||| | ||| |||||||||||| ||| |||||     |
Sbjct: 330 ggtgcagttcgaggaggacgagatcgtggtcatcgggttcggccaggatctgccgatcgg 389

                                       
Query: 363 cgagggcgtgctcgccatggacttcacc 390
           |||||||||||||   ||||||||||||
Sbjct: 390 cgagggcgtgctcaagatggacttcacc 417
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score =  190 bits (96), Expect = 2e-45
 Identities = 165/188 (87%)
 Strand = Plus / Plus

                                                                       
Query: 201 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 260
           ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 124 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 183

                                                                       
Query: 261 ccggtcctccatccgcttccaggactgggcgccgacggaggtggtgcagttcgaggagga 320
           |||  ||||||||||||||||||  | ||||||||||||||||  || ||||||||| ||
Sbjct: 184 ccgcgcctccatccgcttccaggggttggcgccgacggaggtgtcgctgttcgaggacga 243

                                                                       
Query: 321 tgagatcctcgtcctcgggttcggccgggagctgccccctcgcgagggcgtgctcgccat 380
            |||||||| || || | ||||| | |||||||||| |   |||||||||||||||||||
Sbjct: 244 cgagatcctggtgctggagttcgacggggagctgccgctcggcgagggcgtgctcgccat 303

                   
Query: 381 ggacttca 388
           ||||||||
Sbjct: 304 ggacttca 311
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
           insert sequence
          Length = 2985

 Score =  190 bits (96), Expect = 2e-45
 Identities = 165/188 (87%)
 Strand = Plus / Plus

                                                                       
Query: 201 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 260
           ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 125 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 184

                                                                       
Query: 261 ccggtcctccatccgcttccaggactgggcgccgacggaggtggtgcagttcgaggagga 320
           |||  ||||||||||||||||||  | ||||||||||||||||  || ||||||||| ||
Sbjct: 185 ccgcgcctccatccgcttccaggggttggcgccgacggaggtgtcgctgttcgaggacga 244

                                                                       
Query: 321 tgagatcctcgtcctcgggttcggccgggagctgccccctcgcgagggcgtgctcgccat 380
            |||||||| || || | ||||| | |||||||||| |   |||||||||||||||||||
Sbjct: 245 cgagatcctggtgctggagttcgacggggagctgccgctcggcgagggcgtgctcgccat 304

                   
Query: 381 ggacttca 388
           ||||||||
Sbjct: 305 ggacttca 312
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  184 bits (93), Expect = 1e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                            
Query: 63       cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 122
                |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 19014664 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 19014723

                                                                            
Query: 123      cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 182
                ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 19014724 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 19014783

                                                                            
Query: 183      cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 242
                |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 19014784 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 19014843

                                                         
Query: 243      cgccgagctcgccgtcgaccggtcctccatccgcttccagg 283
                ||||||||||||||||||| | |||||| ||||||||||||
Sbjct: 19014844 cgccgagctcgccgtcgacggatcctccgtccgcttccagg 19014884



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                            
Query: 298      gaggtggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccgggagctgccc 357
                ||||||||||||||||||||||| |||||| | ||| |||||||||||| ||| ||||| 
Sbjct: 19015002 gaggtggtgcagttcgaggaggacgagatcgtggtcatcgggttcggccaggatctgccg 19015061

                                                 
Query: 358      cctcgcgagggcgtgctcgccatggacttcacc 390
                    ||||||||||||||   ||||||||||||
Sbjct: 19015062 atcggcgagggcgtgctcaagatggacttcacc 19015094
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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score =  184 bits (93), Expect = 1e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                         
Query: 63    cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 122
             |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 99584 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 99643

                                                                         
Query: 123   cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 182
             ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 99644 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 99703

                                                                         
Query: 183   cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 242
             |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 99704 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 99763

                                                      
Query: 243   cgccgagctcgccgtcgaccggtcctccatccgcttccagg 283
             ||||||||||||||||||| | |||||| ||||||||||||
Sbjct: 99764 cgccgagctcgccgtcgacggatcctccgtccgcttccagg 99804



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                          
Query: 298    gaggtggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccgggagctgccc 357
              ||||||||||||||||||||||| |||||| | ||| |||||||||||| ||| ||||| 
Sbjct: 99922  gaggtggtgcagttcgaggaggacgagatcgtggtcatcgggttcggccaggatctgccg 99981

                                               
Query: 358    cctcgcgagggcgtgctcgccatggacttcacc 390
                  ||||||||||||||   ||||||||||||
Sbjct: 99982  atcggcgagggcgtgctcaagatggacttcacc 100014
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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score =  184 bits (93), Expect = 1e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                         
Query: 63    cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 122
             |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 39451 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 39510

                                                                         
Query: 123   cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 182
             ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 39511 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 39570

                                                                         
Query: 183   cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 242
             |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 39571 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 39630

                                                      
Query: 243   cgccgagctcgccgtcgaccggtcctccatccgcttccagg 283
             ||||||||||||||||||| | |||||| ||||||||||||
Sbjct: 39631 cgccgagctcgccgtcgacggatcctccgtccgcttccagg 39671



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                         
Query: 298   gaggtggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccgggagctgccc 357
             ||||||||||||||||||||||| |||||| | ||| |||||||||||| ||| ||||| 
Sbjct: 39789 gaggtggtgcagttcgaggaggacgagatcgtggtcatcgggttcggccaggatctgccg 39848

                                              
Query: 358   cctcgcgagggcgtgctcgccatggacttcacc 390
                 ||||||||||||||   ||||||||||||
Sbjct: 39849 atcggcgagggcgtgctcaagatggacttcacc 39881
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>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score =  180 bits (91), Expect = 2e-42
 Identities = 181/211 (85%)
 Strand = Plus / Plus

                                                                       
Query: 73  atggcggagtcgccggagcagttcaggggccagtcccgcctcccccgattcgccgagccc 132
           |||||||  ||||||||||||||| |||||||| | || ||||| || | ||||   || 
Sbjct: 1   atggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtgcgcctccccg 60

                                                                       
Query: 133 ctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctccggctccgcg 192
           ||  |||||||||||  |||||||||||||||||| |||||| |||||||||||||||| 
Sbjct: 61  ctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctccggctccgcc 120

                                                                       
Query: 193 tcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctc 252
            | | |||||||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 121 gccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgccgccgagctc 180

                                          
Query: 253 gccgtcgaccggtcctccatccgcttccagg 283
           ||||||||| | |||||| ||||||||||||
Sbjct: 181 gccgtcgacggatcctccgtccgcttccagg 211



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 298 gaggtggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccgggagctgccc 357
           ||||||||||||||||||||||| |||||| | ||| |||||||||||| ||| ||||| 
Sbjct: 248 gaggtggtgcagttcgaggaggacgagatcgtggtcatcgggttcggccaggatctgccg 307

                                            
Query: 358 cctcgcgagggcgtgctcgccatggacttcacc 390
               ||||||||||||||   ||||||||||||
Sbjct: 308 atcggcgagggcgtgctcaagatggacttcacc 340
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>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score =  180 bits (91), Expect = 2e-42
 Identities = 160/183 (87%)
 Strand = Plus / Plus

                                                                       
Query: 199 gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 258
           ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 127 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 186

                                                                       
Query: 259 gaccggtcctccatccgcttccaggactgggcgccgacggaggtggtgcagttcgaggag 318
           |||||  |||||||||||||||||| || ||||||| ||||||||  |  ||||||||||
Sbjct: 187 gaccgcgcctccatccgcttccagggcttggcgccggcggaggtgtcggtgttcgaggag 246

                                                                       
Query: 319 gatgagatcctcgtcctcgggttcggccgggagctgccccctcgcgagggcgtgctcgcc 378
           || |||||||| || || | ||||| | |||||||||| |   |||||||||||||||||
Sbjct: 247 gacgagatcctggtgctggagttcgccggggagctgccgctcggcgagggcgtgctcgcc 306

              
Query: 379 atg 381
           |||
Sbjct: 307 atg 309
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  129 bits (65), Expect = 7e-27
 Identities = 80/85 (94%)
 Strand = Plus / Plus

                                                                            
Query: 199      gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 258
                ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11799403 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 11799462

                                         
Query: 259      gaccggtcctccatccgcttccagg 283
                |||||  ||||||||||||||||||
Sbjct: 11799463 gaccgcgcctccatccgcttccagg 11799487



 Score =  125 bits (63), Expect = 1e-25
 Identities = 78/83 (93%)
 Strand = Plus / Plus

                                                                            
Query: 201      cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 260
                ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11790221 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 11790280

                                       
Query: 261      ccggtcctccatccgcttccagg 283
                |||  ||||||||||||||||||
Sbjct: 11790281 ccgcgcctccatccgcttccagg 11790303



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                            
Query: 288      ggcgccgacggaggtggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccg 347
                ||||||||||||||||  || ||||||||| || |||||||| || || | ||||| | |
Sbjct: 11790402 ggcgccgacggaggtgtcgctgttcgaggacgacgagatcctggtgctggagttcgacgg 11790461

                                                         
Query: 348      ggagctgccccctcgcgagggcgtgctcgccatggacttca 388
                ||||||||| |   |||||||||||||||||||||||||||
Sbjct: 11790462 ggagctgccgctcggcgagggcgtgctcgccatggacttca 11790502



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                            
Query: 288      ggcgccgacggaggtggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccg 347
                ||||||| ||||||||  |  |||||||||||| |||||||| || || | ||||| | |
Sbjct: 11799570 ggcgccggcggaggtgtcggtgttcgaggaggacgagatcctggtgctggagttcgccgg 11799629

                                                  
Query: 348      ggagctgccccctcgcgagggcgtgctcgccatg 381
                ||||||||| |   ||||||||||||||||||||
Sbjct: 11799630 ggagctgccgctcggcgagggcgtgctcgccatg 11799663



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 240      cgccgccgagctcgccgtcg 259
                ||||||||||||||||||||
Sbjct: 18959982 cgccgccgagctcgccgtcg 18960001
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score =  129 bits (65), Expect = 7e-27
 Identities = 80/85 (94%)
 Strand = Plus / Plus

                                                                         
Query: 199   gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 258
             ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 42221 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 42280

                                      
Query: 259   gaccggtcctccatccgcttccagg 283
             |||||  ||||||||||||||||||
Sbjct: 42281 gaccgcgcctccatccgcttccagg 42305



 Score =  125 bits (63), Expect = 1e-25
 Identities = 78/83 (93%)
 Strand = Plus / Plus

                                                                         
Query: 201   cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 260
             ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33039 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 33098

                                    
Query: 261   ccggtcctccatccgcttccagg 283
             |||  ||||||||||||||||||
Sbjct: 33099 ccgcgcctccatccgcttccagg 33121



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                         
Query: 288   ggcgccgacggaggtggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccg 347
             ||||||||||||||||  || ||||||||| || |||||||| || || | ||||| | |
Sbjct: 33220 ggcgccgacggaggtgtcgctgttcgaggacgacgagatcctggtgctggagttcgacgg 33279

                                                      
Query: 348   ggagctgccccctcgcgagggcgtgctcgccatggacttca 388
             ||||||||| |   |||||||||||||||||||||||||||
Sbjct: 33280 ggagctgccgctcggcgagggcgtgctcgccatggacttca 33320



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                         
Query: 288   ggcgccgacggaggtggtgcagttcgaggaggatgagatcctcgtcctcgggttcggccg 347
             ||||||| ||||||||  |  |||||||||||| |||||||| || || | ||||| | |
Sbjct: 42388 ggcgccggcggaggtgtcggtgttcgaggaggacgagatcctggtgctggagttcgccgg 42447

                                               
Query: 348   ggagctgccccctcgcgagggcgtgctcgccatg 381
             ||||||||| |   ||||||||||||||||||||
Sbjct: 42448 ggagctgccgctcggcgagggcgtgctcgccatg 42481
to top
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 214 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 253
           ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 256 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 295



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cggagcagttcaggggccag 105
           ||||||||||||||||||||
Sbjct: 128 cggagcagttcaggggccag 147
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 214     gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 253
               ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 6598577 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 6598616



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 188      ccgcgtcggccgccgtcgccg 208
                |||||||||||||||||||||
Sbjct: 33365600 ccgcgtcggccgccgtcgccg 33365620



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 240     cgccgccgagctcgccgtcga 260
               |||||||||||||||||||||
Sbjct: 4966777 cgccgccgagctcgccgtcga 4966757



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 144      cctcgtcctccgccccgacctcgc 167
                |||| |||||||||||||||||||
Sbjct: 22935054 cctcctcctccgccccgacctcgc 22935031



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      cggagcagttcaggggccag 105
               ||||||||||||||||||||
Sbjct: 6598449 cggagcagttcaggggccag 6598468
to top
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 214   gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 253
             ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 32952 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 32991



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    cggagcagttcaggggccag 105
             ||||||||||||||||||||
Sbjct: 32824 cggagcagttcaggggccag 32843
to top
>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
           insert sequence
          Length = 3020

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 214 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 253
           ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 256 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 295



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  cggagcagttcaggggccag 105
           ||||||||||||||||||||
Sbjct: 128 cggagcagttcaggggccag 147
to top
>ref|XM_473844.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2910

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 240 cgccgccgagctcgccgtcgac 261
           ||||||||||||||||||||||
Sbjct: 309 cgccgccgagctcgccgtcgac 330
to top
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
             complete sequence
          Length = 150551

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 240   cgccgccgagctcgccgtcgac 261
             ||||||||||||||||||||||
Sbjct: 50238 cgccgccgagctcgccgtcgac 50217
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 240      cgccgccgagctcgccgtcgac 261
                ||||||||||||||||||||||
Sbjct: 35300808 cgccgccgagctcgccgtcgac 35300787



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 240      cgccgccgagctcgccgtcgac 261
                ||||||||||||||||||||||
Sbjct: 30952866 cgccgccgagctcgccgtcgac 30952845
to top
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
              sequence
          Length = 134586

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 240    cgccgccgagctcgccgtcgac 261
              ||||||||||||||||||||||
Sbjct: 129870 cgccgccgagctcgccgtcgac 129849
to top
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 240   cgccgccgagctcgccgtcgac 261
             ||||||||||||||||||||||
Sbjct: 96653 cgccgccgagctcgccgtcgac 96632
to top
>ref|XM_468154.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 924

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 188 ccgcgtcggccgccgtcgccg 208
           |||||||||||||||||||||
Sbjct: 151 ccgcgtcggccgccgtcgccg 131
to top
>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02,
             complete sequence
          Length = 147407

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 167   cggcctgcaccttctccggctccgc 191
             ||||||||||||||||| |||||||
Sbjct: 26988 cggcctgcaccttctcccgctccgc 27012
to top
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0052E20, complete sequence
          Length = 162434

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 167   cggcctgcaccttctccggctccgc 191
             ||||||||||||||||| |||||||
Sbjct: 68521 cggcctgcaccttctcccgctccgc 68545
to top
>gb|AC104082.3| Homo sapiens BAC clone RP11-570L13 from 4, complete sequence
          Length = 182770

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     gaagctactgtgttcagaaaa 25
             |||||||||||||||||||||
Sbjct: 21600 gaagctactgtgttcagaaaa 21620
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 167      cggcctgcaccttctccggctccgc 191
                ||||||||||||||||| |||||||
Sbjct: 22964508 cggcctgcaccttctcccgctccgc 22964532



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 240      cgccgccgagctcgccgtcg 259
                ||||||||||||||||||||
Sbjct: 22308796 cgccgccgagctcgccgtcg 22308815
to top
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0031B09
          Length = 132729

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 240   cgccgccgagctcgccgtcga 260
             |||||||||||||||||||||
Sbjct: 37903 cgccgccgagctcgccgtcga 37883
to top
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1145_F01
          Length = 113755

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 240    cgccgccgagctcgccgtcga 260
              |||||||||||||||||||||
Sbjct: 111516 cgccgccgagctcgccgtcga 111496
to top
>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1715_H01
          Length = 138733

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    ccgcgtcggccgccgtcgccg 208
              |||||||||||||||||||||
Sbjct: 106350 ccgcgtcggccgccgtcgccg 106370
to top
>dbj|AK069780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028F19, full
           insert sequence
          Length = 3290

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 167 cggcctgcaccttctccggctccgc 191
           ||||||||||||||||| |||||||
Sbjct: 212 cggcctgcaccttctcccgctccgc 188
to top
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 227     tcctcgtcctcaacgccgccg 247
               |||||||||||||||||||||
Sbjct: 2668988 tcctcgtcctcaacgccgccg 2668968
to top
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940127D9, complete sequence
          Length = 102832

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 240  cgccgccgagctcgccgtcga 260
            |||||||||||||||||||||
Sbjct: 3247 cgccgccgagctcgccgtcga 3267
to top
>ref|XM_466490.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 144 cctcgtcctccgccccgacctcgc 167
           |||| |||||||||||||||||||
Sbjct: 6   cctcctcctccgccccgacctcgc 29
to top
>ref|NM_191023.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 891

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 cgccgccgagctcgccgtcg 259
           ||||||||||||||||||||
Sbjct: 795 cgccgccgagctcgccgtcg 776
to top
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
            OSJNBa0019D02, complete sequence
          Length = 154692

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  cgccgccgagctcgccgtcg 259
            ||||||||||||||||||||
Sbjct: 5244 cgccgccgagctcgccgtcg 5263
to top
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   cgccgccgagctcgccgtcg 259
             ||||||||||||||||||||
Sbjct: 10431 cgccgccgagctcgccgtcg 10450
to top
>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0087D01, complete sequence
          Length = 83225

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   cgccgccgagctcgccgtcg 259
             ||||||||||||||||||||
Sbjct: 27684 cgccgccgagctcgccgtcg 27703
to top
>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15,
              complete sequence
          Length = 143071

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    cgccgccgagctcgccgtcg 259
              ||||||||||||||||||||
Sbjct: 106583 cgccgccgagctcgccgtcg 106602
to top
>gb|AY639147.1| Stizostedion vitreum vitreum genomic sequence
          Length = 10284

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 241  gccgccgagctcgccgtcgaccgg 264
            ||||||||||||||||||| ||||
Sbjct: 8272 gccgccgagctcgccgtcggccgg 8249
to top
>emb|CT025236.2| Xenopus tropicalis finished cDNA, clone TEgg001e05
          Length = 659

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 tccgcttccaggactgggcg 291
           ||||||||||||||||||||
Sbjct: 402 tccgcttccaggactgggcg 421
to top
>gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete sequence
          Length = 38345

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 233   tcctcaacgccgccgagctcgccg 256
             |||||| |||||||||||||||||
Sbjct: 23810 tcctcaccgccgccgagctcgccg 23833
to top
>gb|AY130825.1| Phacus pleuronectes var. triquetra large subunit ribosomal RNA gene,
            partial sequence
          Length = 1648

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  cggccgggagctgccccctc 361
            ||||||||||||||||||||
Sbjct: 1332 cggccgggagctgccccctc 1313
to top
>gb|AY130824.1| Phacus pleuronectes large subunit ribosomal RNA gene, partial
            sequence
          Length = 1647

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  cggccgggagctgccccctc 361
            ||||||||||||||||||||
Sbjct: 1331 cggccgggagctgccccctc 1312
to top
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   cgccgccgagctcgccgtcg 259
             ||||||||||||||||||||
Sbjct: 60972 cgccgccgagctcgccgtcg 60991
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 194    cggccgccgtcgccgtgtccgcgc 217
              ||||||||||||||||| ||||||
Sbjct: 507228 cggccgccgtcgccgtggccgcgc 507205
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 241      gccgccgagctcgccgtcga 260
                ||||||||||||||||||||
Sbjct: 14154294 gccgccgagctcgccgtcga 14154275



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 240     cgccgccgagctcgccgtcg 259
               ||||||||||||||||||||
Sbjct: 4922019 cgccgccgagctcgccgtcg 4922038
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 86       cggagcagttcaggggccag 105
                ||||||||||||||||||||
Sbjct: 12319113 cggagcagttcaggggccag 12319094
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 240      cgccgccgagctcgccgtcg 259
                ||||||||||||||||||||
Sbjct: 34362544 cgccgccgagctcgccgtcg 34362525
to top
>gb|AY741536.1| Pennisetum glaucum TEL1 gene, partial sequence
          Length = 3162

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 cgccgccgagctcgccgtcg 259
           ||||||||||||||||||||
Sbjct: 305 cgccgccgagctcgccgtcg 324
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     gctccgcgtcggccgccgtc 204
               ||||||||||||||||||||
Sbjct: 3883160 gctccgcgtcggccgccgtc 3883179
to top
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468B07
          Length = 169071

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   cgccgccgagctcgccgtcg 259
             ||||||||||||||||||||
Sbjct: 44888 cgccgccgagctcgccgtcg 44869
to top
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0578B12
          Length = 151192

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    cggagcagttcaggggccag 105
             ||||||||||||||||||||
Sbjct: 35573 cggagcagttcaggggccag 35554
to top
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   cctcgtcctccgccccgacctcgc 167
             |||| |||||||||||||||||||
Sbjct: 54856 cctcctcctccgccccgacctcgc 54833
to top
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   cgccgccgagctcgccgtcg 259
             ||||||||||||||||||||
Sbjct: 16403 cgccgccgagctcgccgtcg 16384
to top
>dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E07, full
           insert sequence
          Length = 1764

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 144 cctcgtcctccgccccgacctcgc 167
           |||| |||||||||||||||||||
Sbjct: 6   cctcctcctccgccccgacctcgc 29
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 241      gccgccgagctcgccgtcga 260
                ||||||||||||||||||||
Sbjct: 14108574 gccgccgagctcgccgtcga 14108555



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 240     cgccgccgagctcgccgtcg 259
               ||||||||||||||||||||
Sbjct: 4922001 cgccgccgagctcgccgtcg 4922020
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>emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa0016A01 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 150703

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gccgccgagctcgccgtcga 260
             ||||||||||||||||||||
Sbjct: 80835 gccgccgagctcgccgtcga 80816
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   cgccgccgagctcgccgtcg 259
             ||||||||||||||||||||
Sbjct: 37940 cgccgccgagctcgccgtcg 37921
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 364     gagggcgtgctcgccatgga 383
               ||||||||||||||||||||
Sbjct: 1941902 gagggcgtgctcgccatgga 1941883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,513,670
Number of Sequences: 3902068
Number of extensions: 2513670
Number of successful extensions: 60143
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58425
Number of HSP's gapped (non-prelim): 1708
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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