ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15f02 |
|---|---|
| Clone Library Name | barley_pub |
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 32.7 bits (73), Expect = 0.21 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -1 Query: 316 TTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSGRKP 152 +TTS G G P +G LRP + P G G + + P GD KP Sbjct: 492 STTSSGGGTGPHPPSGTTLRPP-TSSTPGGSPGAENSTSHQPATPGGDTAQTPKP 545
>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)| Length = 319 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/55 (25%), Positives = 22/55 (40%) Frame = -3 Query: 386 IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXXXXAQAGHGGRETLWER 222 + V VD++ P K T F+ D++ + G G ET W+R Sbjct: 83 VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRLGLPGEETYWQR 137
>CACB2_MOUSE (Q8CC27) Voltage-dependent L-type calcium channel beta-2 subunit| (CAB2) (Calcium channel, voltage-dependent, beta 2 subunit) Length = 655 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -1 Query: 343 LSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPC 230 L +SP TL + SQGS D RP A E+PC Sbjct: 482 LPLSP--TLASNSQGSQGDQRPDRSAPRSASQAEEEPC 517
>RS5_SYNPX (Q7U4I4) 30S ribosomal protein S5| Length = 215 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -1 Query: 319 LTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGD 173 +T +S S P+A P ++ RGGGR +R + R RGD Sbjct: 1 MTDSSPQSNPNAVPGAADVPAAAEGQQQEQRRGGGRGERGDRRGGRRGD 49
>NRBP_PONPY (Q5RBH9) Nuclear receptor-binding protein| Length = 535 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -1 Query: 346 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 182 L SVSP +T +TTS S + S + ++ E PCGR R + V +R P Sbjct: 27 LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77
>NRBP_MOUSE (Q99J45) Nuclear receptor-binding protein (MLF1 adapter molecule)| (HLS7-interacting protein kinase) Length = 535 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -1 Query: 346 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 182 L SVSP +T +TTS S + S + ++ E PCGR R + V +R P Sbjct: 27 LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77
>NRBP_MACFA (Q4R8X0) Nuclear receptor-binding protein| Length = 535 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -1 Query: 346 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 182 L SVSP +T +TTS S + S + ++ E PCGR R + V +R P Sbjct: 27 LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77
>NRBP_HUMAN (Q9UHY1) Nuclear receptor-binding protein| Length = 535 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -1 Query: 346 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 182 L SVSP +T +TTS S + S + ++ E PCGR R + V +R P Sbjct: 27 LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -1 Query: 292 PDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSG 161 PD P GG + + + CG G G +DR E + E+SG Sbjct: 524 PDKEPELGG--QEEGERDGLCGLGNGCADRKEAETESQNSELSG 565
>ULK2_HUMAN (Q8IYT8) Serine/threonine-protein kinase ULK2 (EC 2.7.11.1)| (Unc-51-like kinase 2) Length = 1036 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +3 Query: 255 GLSAPPFDGLAS--GPD-PWDVVVKVKYGDTLKRFNGYVNGTHFTLDLSALR 401 G S P +GL + P+ P + +++ ++ DTL+ N + T LDL+A+R Sbjct: 796 GASPPSLEGLITFEAPELPEETLMEREHTDTLRHLNVMLMFTECVLDLTAMR 847
>SYT3_HUMAN (Q9BQG1) Synaptotagmin-3 (Synaptotagmin III) (SytIII)| Length = 590 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -1 Query: 304 QGSGPDARPSNGGALRPDMAAEKPCGR 224 QG+GP R S GG + PCGR Sbjct: 276 QGTGPGGRRSGGGPGSGEAGTGAPCGR 302
>ULK2_MOUSE (Q9QY01) Serine/threonine-protein kinase ULK2 (EC 2.7.11.1)| (Unc-51-like kinase 2) (Serine/threonine-protein kinase Unc51.2) Length = 1037 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +3 Query: 255 GLSAPPFDGLAS--GPD-PWDVVVKVKYGDTLKRFNGYVNGTHFTLDLSALR 401 G S P +GL + P+ P + +++ ++ DTL+ N + T LDL+A+R Sbjct: 797 GASPPSLEGLITFEAPELPEETLMEREHTDTLRHLNMMLMFTECVLDLTAVR 848
>DTD_STREQ (Q54088) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 147 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -1 Query: 349 NLLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAE 239 ++LSVS + T +G+ RP+ GA +PDMA++ Sbjct: 72 SILSVSQFTLYADTKKGN----RPAFTGAAKPDMASQ 104
>GCS1_YEAST (P35197) ADP-ribosylation factor GTPase-activating protein GCS1| Length = 352 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 201 WRSGSILEETKLAAGNLGQ 145 W+SG + EETK AA GQ Sbjct: 276 WQSGELSEETKRAAAQFGQ 294
>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven| Length = 342 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/30 (53%), Positives = 17/30 (56%) Frame = -1 Query: 283 RPSNGGALRPDMAAEKPCGRGGGRSDRVEE 194 R GG LR +P GRGGG S RVEE Sbjct: 53 RGRGGGGLRG--GRWEPGGRGGGASTRVEE 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,469,854 Number of Sequences: 219361 Number of extensions: 685329 Number of successful extensions: 2315 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2232 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2315 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
