Clone Name | bastl15e10 |
---|---|
Clone Library Name | barley_pub |
>emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chromosome 10 Contains the 5' end of a novel gene, complete sequence Length = 152898 Score = 40.1 bits (20), Expect = 0.67 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tgaagagatggggaagaaca 37 |||||||||||||||||||| Sbjct: 89539 tgaagagatggggaagaaca 89558
>gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, complete sequence Length = 181370 Score = 40.1 bits (20), Expect = 0.67 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tgaagagatggggaagaaca 37 |||||||||||||||||||| Sbjct: 86298 tgaagagatggggaagaaca 86317
>emb|AL805938.4| Mouse DNA sequence from clone RP23-248L9 on chromosome X, complete sequence Length = 81921 Score = 40.1 bits (20), Expect = 0.67 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gaagagatggggaagaacac 38 |||||||||||||||||||| Sbjct: 22065 gaagagatggggaagaacac 22046
>gb|AC116384.9| Mus musculus chromosome 3, clone RP23-20L19, complete sequence Length = 203580 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 46365 aagagatggggaagaacac 46347
>gb|AC169985.2| Mus musculus BAC clone RP23-289G14 from chromosome 13, complete sequence Length = 218393 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 10649 aagagatggggaagaacac 10631
>gb|AC137713.8| Mus musculus chromosome 15, clone RP24-468P6, complete sequence Length = 155341 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 133888 aagagatggggaagaacac 133906
>gb|AC165315.5| Mus musculus chromosome 3, clone RP24-205J15, complete sequence Length = 107166 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 104511 aagagatggggaagaacac 104493
>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence Length = 198036 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 43370 aagagatggggaagaacac 43352
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ctgaagagatggggaagaa 35 ||||||||||||||||||| Sbjct: 6042684 ctgaagagatggggaagaa 6042702
>gb|AY359583.1| Zea mays B73 Etr2-like ethylene receptor (ETR61) pseudogene, partial sequence Length = 9532 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 gaagagatggggaagaaca 37 ||||||||||||||||||| Sbjct: 2429 gaagagatggggaagaaca 2411
>gb|AC127560.4| Mus musculus BAC clone RP24-267I18 from chromosome 5, complete sequence Length = 186768 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 12258 aagagatggggaagaacac 12240
>gb|AC132268.3| Mus musculus BAC clone RP24-399H6 from chromosome 19, complete sequence Length = 191573 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cgctgaagagatggggaag 33 ||||||||||||||||||| Sbjct: 26363 cgctgaagagatggggaag 26345
>gb|AC127681.4| Mus musculus BAC clone RP24-164P24 from chromosome 3, complete sequence Length = 175131 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 157831 aagagatggggaagaacac 157813
>gb|AC115291.7| Mus musculus BAC clone RP23-65P2 from 15, complete sequence Length = 237119 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 77852 aagagatggggaagaacac 77870
>gb|AC098883.3| Mus musculus BAC clone RP23-122F3 from 16, complete sequence Length = 211348 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 15200 aagagatggggaagaacac 15182
>emb|AL671970.9| Mouse DNA sequence from clone RP23-152A20 on chromosome 4, complete sequence Length = 166569 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 144210 aagagatggggaagaacac 144228
>emb|AL691470.17| Mouse DNA sequence from clone RP23-160F12 on chromosome 11 Contains the 3' end of gene FLJ13305, a novel gene, a novel gene (1700061J23Rik) and a CpG island, complete sequence Length = 195614 Score = 38.2 bits (19), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 gctgaagagatggggaagaacac 38 ||||||||||||| ||||||||| Sbjct: 182559 gctgaagagatggtgaagaacac 182537
>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains part of the Abca13 gene for ATP-binding cassette sub-family A (ABC1) member 13, complete sequence Length = 205759 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 25112 aagagatggggaagaacac 25094
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08, complete sequence Length = 111961 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ctgaagagatggggaagaa 35 ||||||||||||||||||| Sbjct: 101219 ctgaagagatggggaagaa 101237
>gb|AC112083.7| Rattus norvegicus BAC CH230-288C21 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 191137 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 134217 aagagatggggaagaacac 134199
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ctgaagagatggggaagaa 35 ||||||||||||||||||| Sbjct: 6041897 ctgaagagatggggaagaa 6041915
>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11, complete sequence Length = 174865 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ctgaagagatggggaagaa 35 ||||||||||||||||||| Sbjct: 36160 ctgaagagatggggaagaa 36178
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 cacggtgaccgtgatcttc 54 ||||||||||||||||||| Sbjct: 7204121 cacggtgaccgtgatcttc 7204103
>gb|AC174451.3| Mus musculus BAC clone RP23-182A1 from chromosome 3, complete sequence Length = 205136 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 11984 aagagatggggaagaacac 11966
>emb|BX005224.9| Mouse DNA sequence from clone RP23-174M24 on chromosome X, complete sequence Length = 171627 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 gaagagatggggaagaaca 37 ||||||||||||||||||| Sbjct: 163190 gaagagatggggaagaaca 163172
>emb|AL671891.12| Mouse DNA sequence from clone RP23-405E21 on chromosome X, complete sequence Length = 195749 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 52482 aagagatggggaagaacac 52464
>gb|AC140434.3| Mus musculus BAC clone RP24-105G15 from 3, complete sequence Length = 160839 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 41962 aagagatggggaagaacac 41944
>gb|AC130844.3| Mus musculus BAC clone RP24-529I3 from 16, complete sequence Length = 168387 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 158544 aagagatggggaagaacac 158526
>gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosome 13, complete sequence Length = 212206 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 204615 aagagatggggaagaacac 204597
>emb|AL928683.8| Mouse DNA sequence from clone RP23-78O17 on chromosome 2, complete sequence Length = 142772 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 17106 aagagatggggaagaacac 17088
>emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chromosome 2, complete sequence Length = 130361 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 122532 aagagatggggaagaacac 122550
>emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chromosome 2, complete sequence Length = 181014 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 178614 aagagatggggaagaacac 178632
>gb|AC123661.22| Mus musculus chromosome 5, clone RP23-211E12, complete sequence Length = 190017 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 aagagatggggaagaacac 38 ||||||||||||||||||| Sbjct: 66103 aagagatggggaagaacac 66085 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 459,912 Number of Sequences: 3902068 Number of extensions: 459912 Number of successful extensions: 41182 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41087 Number of HSP's gapped (non-prelim): 95 length of query: 68 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 47 effective length of database: 17,151,101,840 effective search space: 806101786480 effective search space used: 806101786480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)