ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chr... 40 0.67
2gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, comp... 40 0.67
3emb|AL805938.4| Mouse DNA sequence from clone RP23-248L9 on chro... 40 0.67
4gb|AC116384.9| Mus musculus chromosome 3, clone RP23-20L19, comp... 38 2.6
5gb|AC169985.2| Mus musculus BAC clone RP23-289G14 from chromosom... 38 2.6
6gb|AC137713.8| Mus musculus chromosome 15, clone RP24-468P6, com... 38 2.6
7gb|AC165315.5| Mus musculus chromosome 3, clone RP24-205J15, com... 38 2.6
8gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosom... 38 2.6
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 2.6
10gb|AY359583.1| Zea mays B73 Etr2-like ethylene receptor (ETR61) ... 38 2.6
11gb|AC127560.4| Mus musculus BAC clone RP24-267I18 from chromosom... 38 2.6
12gb|AC132268.3| Mus musculus BAC clone RP24-399H6 from chromosome... 38 2.6
13gb|AC127681.4| Mus musculus BAC clone RP24-164P24 from chromosom... 38 2.6
14gb|AC115291.7| Mus musculus BAC clone RP23-65P2 from 15, complet... 38 2.6
15gb|AC098883.3| Mus musculus BAC clone RP23-122F3 from 16, comple... 38 2.6
16emb|AL671970.9| Mouse DNA sequence from clone RP23-152A20 on chr... 38 2.6
17emb|AL691470.17| Mouse DNA sequence from clone RP23-160F12 on ch... 38 2.6
18emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chr... 38 2.6
19gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome... 38 2.6
20gb|AC112083.7| Rattus norvegicus BAC CH230-288C21 (Children's H... 38 2.6
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.6
22gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome... 38 2.6
23dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 2.6
24gb|AC174451.3| Mus musculus BAC clone RP23-182A1 from chromosome... 38 2.6
25emb|BX005224.9| Mouse DNA sequence from clone RP23-174M24 on chr... 38 2.6
26emb|AL671891.12| Mouse DNA sequence from clone RP23-405E21 on ch... 38 2.6
27gb|AC140434.3| Mus musculus BAC clone RP24-105G15 from 3, comple... 38 2.6
28gb|AC130844.3| Mus musculus BAC clone RP24-529I3 from 16, comple... 38 2.6
29gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosom... 38 2.6
30emb|AL928683.8| Mouse DNA sequence from clone RP23-78O17 on chro... 38 2.6
31emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chr... 38 2.6
32emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chro... 38 2.6
33gb|AC123661.22| Mus musculus chromosome 5, clone RP23-211E12, co... 38 2.6

>emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 152898

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tgaagagatggggaagaaca 37
             ||||||||||||||||||||
Sbjct: 89539 tgaagagatggggaagaaca 89558



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>gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, complete sequence
          Length = 181370

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tgaagagatggggaagaaca 37
             ||||||||||||||||||||
Sbjct: 86298 tgaagagatggggaagaaca 86317



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>emb|AL805938.4| Mouse DNA sequence from clone RP23-248L9 on chromosome X, complete
             sequence
          Length = 81921

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    gaagagatggggaagaacac 38
             ||||||||||||||||||||
Sbjct: 22065 gaagagatggggaagaacac 22046



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>gb|AC116384.9| Mus musculus chromosome 3, clone RP23-20L19, complete sequence
          Length = 203580

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 46365 aagagatggggaagaacac 46347



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>gb|AC169985.2| Mus musculus BAC clone RP23-289G14 from chromosome 13, complete
             sequence
          Length = 218393

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 10649 aagagatggggaagaacac 10631



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>gb|AC137713.8| Mus musculus chromosome 15, clone RP24-468P6, complete sequence
          Length = 155341

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 133888 aagagatggggaagaacac 133906



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>gb|AC165315.5| Mus musculus chromosome 3, clone RP24-205J15, complete sequence
          Length = 107166

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 104511 aagagatggggaagaacac 104493



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>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence
          Length = 198036

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 43370 aagagatggggaagaacac 43352



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 17      ctgaagagatggggaagaa 35
               |||||||||||||||||||
Sbjct: 6042684 ctgaagagatggggaagaa 6042702



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>gb|AY359583.1| Zea mays B73 Etr2-like ethylene receptor (ETR61) pseudogene, partial
            sequence
          Length = 9532

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 19   gaagagatggggaagaaca 37
            |||||||||||||||||||
Sbjct: 2429 gaagagatggggaagaaca 2411



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>gb|AC127560.4| Mus musculus BAC clone RP24-267I18 from chromosome 5, complete sequence
          Length = 186768

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 12258 aagagatggggaagaacac 12240



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>gb|AC132268.3| Mus musculus BAC clone RP24-399H6 from chromosome 19, complete sequence
          Length = 191573

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    cgctgaagagatggggaag 33
             |||||||||||||||||||
Sbjct: 26363 cgctgaagagatggggaag 26345



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>gb|AC127681.4| Mus musculus BAC clone RP24-164P24 from chromosome 3, complete sequence
          Length = 175131

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 157831 aagagatggggaagaacac 157813



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>gb|AC115291.7| Mus musculus BAC clone RP23-65P2 from 15, complete sequence
          Length = 237119

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 77852 aagagatggggaagaacac 77870



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>gb|AC098883.3| Mus musculus BAC clone RP23-122F3 from 16, complete sequence
          Length = 211348

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 15200 aagagatggggaagaacac 15182



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>emb|AL671970.9| Mouse DNA sequence from clone RP23-152A20 on chromosome 4, complete
              sequence
          Length = 166569

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 144210 aagagatggggaagaacac 144228



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>emb|AL691470.17| Mouse DNA sequence from clone RP23-160F12 on chromosome 11 Contains the
              3' end of gene FLJ13305, a novel gene, a novel gene
              (1700061J23Rik) and a CpG island, complete sequence
          Length = 195614

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 16     gctgaagagatggggaagaacac 38
              ||||||||||||| |||||||||
Sbjct: 182559 gctgaagagatggtgaagaacac 182537



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>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains
             part of the Abca13 gene for ATP-binding cassette
             sub-family A (ABC1) member 13, complete sequence
          Length = 205759

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 25112 aagagatggggaagaacac 25094



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>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
              complete sequence
          Length = 111961

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     ctgaagagatggggaagaa 35
              |||||||||||||||||||
Sbjct: 101219 ctgaagagatggggaagaa 101237



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>gb|AC112083.7| Rattus norvegicus  BAC CH230-288C21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 191137

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 134217 aagagatggggaagaacac 134199



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 17      ctgaagagatggggaagaa 35
               |||||||||||||||||||
Sbjct: 6041897 ctgaagagatggggaagaa 6041915



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>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0090D11, complete sequence
          Length = 174865

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    ctgaagagatggggaagaa 35
             |||||||||||||||||||
Sbjct: 36160 ctgaagagatggggaagaa 36178



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      cacggtgaccgtgatcttc 54
               |||||||||||||||||||
Sbjct: 7204121 cacggtgaccgtgatcttc 7204103



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>gb|AC174451.3| Mus musculus BAC clone RP23-182A1 from chromosome 3, complete sequence
          Length = 205136

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 11984 aagagatggggaagaacac 11966



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>emb|BX005224.9| Mouse DNA sequence from clone RP23-174M24 on chromosome X, complete
              sequence
          Length = 171627

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     gaagagatggggaagaaca 37
              |||||||||||||||||||
Sbjct: 163190 gaagagatggggaagaaca 163172



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>emb|AL671891.12| Mouse DNA sequence from clone RP23-405E21 on chromosome X, complete
             sequence
          Length = 195749

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 52482 aagagatggggaagaacac 52464



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>gb|AC140434.3| Mus musculus BAC clone RP24-105G15 from 3, complete sequence
          Length = 160839

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 41962 aagagatggggaagaacac 41944



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>gb|AC130844.3| Mus musculus BAC clone RP24-529I3 from 16, complete sequence
          Length = 168387

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 158544 aagagatggggaagaacac 158526



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>gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosome 13, complete sequence
          Length = 212206

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 204615 aagagatggggaagaacac 204597



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>emb|AL928683.8| Mouse DNA sequence from clone RP23-78O17 on chromosome 2, complete
             sequence
          Length = 142772

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 17106 aagagatggggaagaacac 17088



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>emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chromosome 2, complete
              sequence
          Length = 130361

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 122532 aagagatggggaagaacac 122550



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>emb|AL840626.7| Mouse DNA sequence from clone RP23-151M8 on chromosome 2, complete
              sequence
          Length = 181014

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     aagagatggggaagaacac 38
              |||||||||||||||||||
Sbjct: 178614 aagagatggggaagaacac 178632



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>gb|AC123661.22| Mus musculus chromosome 5, clone RP23-211E12, complete sequence
          Length = 190017

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aagagatggggaagaacac 38
             |||||||||||||||||||
Sbjct: 66103 aagagatggggaagaacac 66085


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 459,912
Number of Sequences: 3902068
Number of extensions: 459912
Number of successful extensions: 41182
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41087
Number of HSP's gapped (non-prelim): 95
length of query: 68
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 47
effective length of database: 17,151,101,840
effective search space: 806101786480
effective search space used: 806101786480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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