ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15e08 |
|---|---|
| Clone Library Name | barley_pub |
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 30.8 bits (68), Expect = 0.84 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -1 Query: 372 AGRALPVLGIRS*ALATSTPNLYVAIASGDVAVYCTALWSWRRPDPGGSGPMPPRERGPT 193 AG A PV G+ + TP +A+ A + + + PG GP PP RG Sbjct: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYTPGRGGPPPPMSRGAP 184 Query: 192 EP 187 P Sbjct: 185 PP 186
>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9| Length = 736 Score = 30.8 bits (68), Expect = 0.84 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +2 Query: 173 PALARGSVGPRSRGGIGPDPPGSG 244 P +RG GP RGG GP P G G Sbjct: 338 PPGSRGGYGPPGRGGYGPGPNGRG 361
>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 231 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -1 Query: 372 AGRALPVLGIRS*ALATSTPNLYVAIASGDVAVYCTALWSWRRPDPGGSGPMPPRERGPT 193 AG A PV G+ + TP +A+ A + + + PG GP PP RG Sbjct: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184 Query: 192 EP 187 P Sbjct: 185 PP 186
>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and| B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -1 Query: 372 AGRALPVLGIRS*ALATSTPNLYVAIASGDVAVYCTALWSWRRPDPGGSGPMPPRERGPT 193 AG A PV G+ + TP +A+ A + + + PG GP PP RG Sbjct: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184 Query: 192 EP 187 P Sbjct: 185 PP 186
>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -1 Query: 372 AGRALPVLGIRS*ALATSTPNLYVAIASGDVAVYCTALWSWRRPDPGGSGPMPPRERGPT 193 AG A PV G+ + TP +A+ A + + + PG GP PP RG Sbjct: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184 Query: 192 EP 187 P Sbjct: 185 PP 186
>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment) Length = 214 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -1 Query: 372 AGRALPVLGIRS*ALATSTPNLYVAIASGDVAVYCTALWSWRRPDPGGSGPMPPRERGPT 193 AG A PV G+ + TP +A+ A + + + PG GP PP RG Sbjct: 108 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 167 Query: 192 EP 187 P Sbjct: 168 PP 169
>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)| Length = 1000 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +2 Query: 2 HPTQAPPHATQNPDPSASASPGIPSTVGR 88 HPT+APPHA P A P P + R Sbjct: 8 HPTRAPPHALPTPRAPPRAPPPSPRSARR 36
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2158 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -1 Query: 249 RRPDPGGSGPMPPRERGPTEPR 184 R+P GG GP PPR TE R Sbjct: 903 RKPARGGQGPPPPRRENRTETR 924
>GNRR2_CALJA (Q95MG6) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 380 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = -1 Query: 369 GRALPVLGIRS*ALATSTPNLYVAIASGDVAVYCTALWSWRRPDPGGSGPMPPR 208 G LP + T L+V+ A G++AV LWS RP P P P R Sbjct: 27 GSELPTFSTAAKVRVGVTIVLFVSSAGGNLAV----LWSVTRPQPSQLRPSPVR 76
>GNRR2_MACMU (Q95JG1) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 379 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = -1 Query: 369 GRALPVLGIRS*ALATSTPNLYVAIASGDVAVYCTALWSWRRPDPGGSGPMPPR 208 G LP + T L+V+ A G++AV LWS RP P P P R Sbjct: 27 GSELPTFSAAAKVRVGVTIVLFVSSAGGNLAV----LWSVTRPQPSQLRPSPVR 76
>GNRR2_CERAE (Q95MH6) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 379 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = -1 Query: 369 GRALPVLGIRS*ALATSTPNLYVAIASGDVAVYCTALWSWRRPDPGGSGPMPPR 208 G LP + T L+V+ A G++AV LWS RP P P P R Sbjct: 27 GSELPTFSTAAKVRVGVTIVLFVSSAGGNLAV----LWSVTRPQPSQLRPSPVR 76
>CD1B1_SHEEP (Q28565) T-cell surface glycoprotein CD1b-1 precursor (CD1b-1| antigen) (SCD1A25) Length = 333 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -1 Query: 324 TSTPNLYVAI-ASGDVAVYCTALWSWRR 244 TST ++VAI S + + C ALW WRR Sbjct: 299 TSTGLIFVAIIVSSLILLICLALWFWRR 326
>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9| Length = 705 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%) Frame = +2 Query: 173 PALARGSVGP--RSRGGIGPDPPGSG 244 P RG GP R RGG GP P G G Sbjct: 350 PQNGRGGYGPPGRGRGGYGPPPRGYG 375
>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing| protein) Length = 1104 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/27 (40%), Positives = 12/27 (44%) Frame = +2 Query: 5 PTQAPPHATQNPDPSASASPGIPSTVG 85 PT PP A PDP + P P G Sbjct: 23 PTDQPPAAHAKPDPGSGGQPAGPGAAG 49
>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)| Length = 1411 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 231 GSGPMPPRERGPTEPRASAGTHE 163 G+GP+PP + GP P A G E Sbjct: 443 GAGPVPPGKVGPATPSAQVGKWE 465
>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (Fragments) Length = 1956 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%) Frame = -2 Query: 356 PSWASGHEHL-----RPPRPTYMSPLLLVMS 279 PSWAS H + +P +PT +SP LL S Sbjct: 499 PSWASDHNYNAVKPEKPEKPTALSPTLLSKS 529
>VGLC_BHV1C (P14378) Glycoprotein GIII precursor| Length = 521 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -1 Query: 279 AVYCTALWSWRR--PDPGGSGPMPPRERGPTEPRASAGT 169 A++ AL S RR + + P PP PTE +SAGT Sbjct: 12 AIFAWALLSARRGLAEEAEASPSPPPSPCPTETESSAGT 50
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = -1 Query: 246 RPDPGGSGPMPP-RERGPTEPRASAG 172 R +PG SGPM P +RGP P AG Sbjct: 36 RGEPGDSGPMGPIGKRGPPGPAGIAG 61
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/27 (40%), Positives = 12/27 (44%) Frame = +2 Query: 5 PTQAPPHATQNPDPSASASPGIPSTVG 85 PT PP A PDP + P P G Sbjct: 23 PTGQPPAAHAKPDPGSGGQPAGPGAAG 49
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -1 Query: 240 DPGGSGPMPPRERGPTEPRASAG 172 +PGGSGPM P RGP P G Sbjct: 199 EPGGSGPMGP--RGPPGPPGKNG 219
>IDLC_HUMAN (O14645) Axonemal dynein light intermediate polypeptide 1 (Inner| dynein arm light chain, axonemal) (hp28) Length = 258 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -1 Query: 249 RRPDPGGSGPMPPRERGPTEP 187 ++P P GS P PP+ + P+ P Sbjct: 36 QQPGPSGSAPQPPKTKLPSTP 56
>CT174_HUMAN (Q5JPB2) Protein C20orf174| Length = 1082 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 2 HPTQAPPHATQNPDPSASASP 64 H T++P H+TQNP PS A P Sbjct: 567 HSTRSP-HSTQNPFPSLKAEP 586
>ACHB2_CHICK (P09484) Neuronal acetylcholine receptor protein, beta-2 subunit| precursor (Neuronal acetylcholine receptor non-alpha-1 chain) Length = 491 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +2 Query: 176 ALARGSVGPRSRGGIGPDPPGSGRLQLHSAVQ 271 A A G G R R G GPDPP L AV+ Sbjct: 387 AKAEGLNGYRERQGQGPDPPAPCGCGLEEAVE 418 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,596,607 Number of Sequences: 219361 Number of extensions: 799663 Number of successful extensions: 4150 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3455 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4133 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
