ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.1
2dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic D... 38 1.1
3dbj|AK106347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.1
4gb|AC167928.2| Mycosphaerella graminicola clone JGIBBWB-9H23, co... 38 1.1
5dbj|AK070013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 36 4.2

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 14      cctccgccgcagatccaac 32
               |||||||||||||||||||
Sbjct: 9372413 cctccgccgcagatccaac 9372431



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>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0024J13
          Length = 127614

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    cctccgccgcagatccaac 32
             |||||||||||||||||||
Sbjct: 55827 cctccgccgcagatccaac 55845



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>dbj|AK106347.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H06,
          full insert sequence
          Length = 2292

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 14 cctccgccgcagatccaac 32
          |||||||||||||||||||
Sbjct: 30 cctccgccgcagatccaac 12



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>gb|AC167928.2| Mycosphaerella graminicola clone JGIBBWB-9H23, complete sequence
          Length = 31059

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 4    tctggatccacctccgccgcaga 26
            ||||||||||||||| |||||||
Sbjct: 3484 tctggatccacctcccccgcaga 3462



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>dbj|AK070013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039K05,
          full insert sequence
          Length = 3230

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 14 cctccgccgcagatccaa 31
          ||||||||||||||||||
Sbjct: 20 cctccgccgcagatccaa 3


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 181,317
Number of Sequences: 3902068
Number of extensions: 181317
Number of successful extensions: 49588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49553
Number of HSP's gapped (non-prelim): 35
length of query: 39
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 19
effective length of database: 17,155,003,908
effective search space: 325945074252
effective search space used: 325945074252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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