ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 51 6e-07
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 51 6e-07
3NUPL_XENLA (P05221) Nucleoplasmin 31 0.83
4FOXK2_HUMAN (Q01167) Forkhead box protein K2 (Interleukin enhanc... 29 3.2
5PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) ... 28 5.4
6HR1A_TRIFL (Q8JIR2) Hemorrhagic metalloproteinase HR1a precursor... 27 9.2

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +1

Query: 292 MLPRKREIVAGEVEDLQKITRAGEGE 369
           MLPRKREIVAGEVEDLQK TRAGEGE
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGE 26



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +1

Query: 292 MLPRKREIVAGEVEDLQKITRAGEGE 369
           MLPRKREIVAGEVEDLQK TRAGEGE
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGE 26



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>NUPL_XENLA (P05221) Nucleoplasmin|
          Length = 200

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 19/77 (24%), Positives = 30/77 (38%)
 Frame = -3

Query: 276 AEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLHRPGTSXXXXXXXXXXXGRADPAE 97
           A E +      E++   +G  E   +  +  PP+ + RP  +            + D + 
Sbjct: 119 AMEEDYSWAEEEDEGEAEGEEEEEEEEDQESPPKAVKRPAATKKAGQAKKKKLDKEDESS 178

Query: 96  LTLDSPVASGKEAGEGR 46
              DSP   GK AG GR
Sbjct: 179 EE-DSPTKKGKGAGRGR 194



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>FOXK2_HUMAN (Q01167) Forkhead box protein K2 (Interleukin enhancer-binding|
           factor 1) (Cellular transcription factor ILF-1)
          Length = 655

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 276 AEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLHRPG 157
           ++E   G  R +  A + GR   P ++    PPR+LH PG
Sbjct: 43  SDEEALGDHRPQLVAGLGGREHGPLELHLPAPPRDLHAPG 82



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>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)|
          Length = 1388

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 78   VASGKEAGEGRSV*GFWDGTGGPD 7
            V +GK  G+G++V GF DGT   D
Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384



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>HR1A_TRIFL (Q8JIR2) Hemorrhagic metalloproteinase HR1a precursor (EC 3.4.24.-)|
           [Contains: Disintegrin-like 1a]
          Length = 609

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 224 TAAGSCRVRSSACDRRETCT 165
           TA   CR R S CD  E+CT
Sbjct: 457 TAGTECRARRSECDIAESCT 476


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,761,383
Number of Sequences: 219361
Number of extensions: 553968
Number of successful extensions: 1922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1919
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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