>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1282

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +1

Query: 175 ELDLSNCQRCTPSYRLLPKNYPVPASSCRTDLGVSVLNDHW 297
           E+D ++C+R   SYR LPK+Y  P  + RT L   VLND W
Sbjct: 546 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTW 586

>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1273

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +1

Query: 175 ELDLSNCQRCTPSYRLLPKNYPVPASSCRTDLGVSVLNDHW 297
           E+D ++C+R   SYR LPK+Y  P  + RT L   VLND W
Sbjct: 545 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTW 585

>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)|
          Length = 1522

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +1

Query: 166 PISELDLSNCQRCTPSYRLLPKNYPVPASSCRTDLGVSVLNDHW 297
           P   +DL+ C+ C PSYRLLPK   +   S R DL  ++LND W
Sbjct: 584 PRPRVDLTQCKSCGPSYRLLPKIELLLPCSGRDDLCWTILNDAW 627

>SIN3B_MOUSE (Q62141) Paired amphipathic helix protein Sin3b (Transcriptional|
           corepressor Sin3b) (Histone deacetylase complex subunit
           Sin3b)
          Length = 1098

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +1

Query: 175 ELDLSNCQRCTPSYRLLPKNYPVPASSCRTDLGVSVLNDHW 297
           E+D ++C+R   SYR LPK Y  P  S RT +   VLND W
Sbjct: 379 EIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTW 419

>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional|
           corepressor Sin3b) (Histone deacetylase complex subunit
           Sin3b)
          Length = 1162

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 175 ELDLSNCQRCTPSYRLLPKNYPVPASSCRTDLGVSVLNDHW 297
           E+D ++C+R   SYR LPK Y  P  S RT +   +  DHW
Sbjct: 388 EIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEL--DHW 426

>SIN3_YEAST (P22579) Paired amphipathic helix protein SIN3|
          Length = 1536

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 178 LDLSNCQRCTPSYRLLPKNYPVPASSCRTDLGVSVLNDHW 297
           LDL  C+   PSY+ LPK+      S R D+   VLND W
Sbjct: 743 LDLDLCEAFGPSYKRLPKSDTFMPCSGRDDMCWEVLNDEW 782

>ASXL1_MOUSE (P59598) Putative Polycomb group protein ASXL1 (Additional sex|
           combs-like protein 1)
          Length = 1514

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = +1

Query: 4   QRDKGRAGEDRERDAE*LSEKERERLDKVSALNSKEATTHKATAFSTKEKYLCKPISELD 183
           Q  K +  +  E++A     +++ RL+   +  +   + H      TKE+    PI  + 
Sbjct: 514 QETKDQKRKSFEQEASASFPEKKPRLEDRQSFRNTIESVHTEKPQPTKEEPKVPPI-RIQ 572

Query: 184 LSNCQ-----RCTPSYRLLPKNYPVPASSCRTDLGVSVLND 291
           LS  +     +  P+Y++ P+  P+  SSCR   G   L D
Sbjct: 573 LSRIKPPWVAKGRPTYQICPRIVPITESSCRGWTGARTLAD 613

>PST2_SCHPO (O13919) Paired amphipathic helix protein pst2 (SIN3 homolog 2)|
          Length = 1075

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 187 SNCQRCTPSYRLLPKNYPVPASSCRTDLGVSVLNDHW 297
           S+   C PSYRLLP      + S R D    +LND W
Sbjct: 332 SDFPECGPSYRLLPVEERNISCSGRDDFAWGILNDDW 368

>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6) (Glycoprotein|
            11A) (Glycoprotein 16) (Glycoprotein G130)
          Length = 928

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 13   KGRAGEDRERDAE*LSEKERERLDKVSALNSKEATTHKATAFSTKEKYLCKPISELDLSN 192
            + R GE+ E       E+ RE +  +S +++ E   HKA   +   + L   +++L L  
Sbjct: 852  RNRPGEEEEEFDAAKLEQAREMIKYMSLVSAVERQEHKAKKSNKAARLLATRLTQLALR- 910

Query: 193  CQRCTPSYRLLP 228
             +R  P Y+ LP
Sbjct: 911  -RRAPPEYQQLP 921

>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +1

Query: 1    KQRDKGRAGEDRERDAE*LSEKERERLDKVSALNSKEATTHKATAFSTKEKYLCKPISE 177
            ++RD+ R  E RER+++   E+ER+RL   +A          A A S   ++  +P+SE
Sbjct: 1777 RERDREREKEQRERESD--RERERDRLAHAAA---------AAAAASAPSEHYLRPVSE 1824

>ASXL1_HUMAN (Q8IXJ9) Putative Polycomb group protein ASXL1 (Additional sex|
           combs-like protein 1)
          Length = 1541

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
 Frame = +1

Query: 4   QRDKGRAGEDRERDAE*LSEKERERLDKVSALNSKEATTHKATAFSTKEKYLCKPISELD 183
           Q  K +  +  E+ A     +++ RL+   +  +   + H      TKE+    PI  + 
Sbjct: 517 QEPKDQKRKSFEQAASASFPEKKPRLEDRQSFRNTIESVHTEKPQPTKEEPKVPPI-RIQ 575

Query: 184 LSNCQ-----RCTPSYRLLPKNYPVPASSCRTDLGVSVLND 291
           LS  +     +  P+Y++ P+  P   SSCR   G   L D
Sbjct: 576 LSRIKPPWVVKGQPTYQICPRIIPTTESSCRGWTGARTLAD 616

>POLR_PHMV (P36352) RNA replicase polyprotein (EC 2.7.7.48) (Fragment)|
          Length = 178

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 193 CQRCTPSYRLLPKNYPVPAS 252
           C+ CTPS +LL  N P+P S
Sbjct: 104 CRNCTPSQKLLLSNDPIPES 123

>USH2A_RAT (Q8K3K1) Usherin precursor (Usher syndrome type-2A protein homolog)|
           (Usher syndrome type IIa protein homolog)
          Length = 1512

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 79  LDKVSALNSKEATTHKATAFSTKEKY--LCKPISELDLSNCQRCTPSYRLLP 228
           +D+++ +   +   H  T   T+  Y  LC P S  +   C RC+P Y   P
Sbjct: 505 VDEITIIGRCQCHGHAETCDRTRRPYRCLCSPHSFTEGPQCGRCSPLYNDKP 556

>CAC1A_DROME (P91645) Voltage-dependent calcium channel type A alpha-1 subunit|
            (Cacophony protein) (Nightblind A protein)
            (No-on-transient B protein) (Dmca1A)
          Length = 1851

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 7    RDKGRAGEDRERDAE*LSEKERERLDKVSALNSKEA 114
            RD+ R   +RERD E   E ERERL+ ++ L+ ++A
Sbjct: 1781 RDRERELYERERDRE--REVERERLEYIAPLSFEQA 1814

>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
           finger protein 20)
          Length = 975

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 1   KQRDKGRAGEDRERDAE*LSEKERERLDKVSALNSKEATTHK 126
           ++R++ R  ++RER+ E   EKERER  +    + KE  + K
Sbjct: 567 EERERERREKEREREREREKEKEREREKQKLKESEKERDSAK 608

>BCAL2_ARATH (Q9ASR4) Branched-chain-amino-acid aminotransferase-like protein 2|
          Length = 559

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 115 TTHKATAFSTKEKY-LCKPISELDLSNCQRCTPSYRLL 225
           T HK+T FS+ +KY    P+   DL   ++C P Y +L
Sbjct: 196 TLHKSTGFSSPQKYPQTFPLMHYDL--LEQCLPLYNIL 231

>BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
           finger protein 20)
          Length = 973

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 1   KQRDKGRAGEDRERDAE*LSEKERERLDKVSALNSKEATTHK 126
           ++R++ R  ++RER+ E   EKERER  +    + KE  + K
Sbjct: 565 EERERERREKEREREREREKEKEREREKQKLKESEKERDSVK 606

>ZN330_DROME (Q9VAU9) Zinc finger protein 330 homolog (Nucleolar autoantigen 36|
           homolog)
          Length = 315

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
 Frame = +1

Query: 148 EKYLCKPISELDLSNCQRCTPSY---------RLLPKNYPVPASSCRTDLGVS 279
           E Y C+  ++L   +C RC   Y             KN P+P   C  D  V+
Sbjct: 169 ENYKCQSCNKLGQYSCLRCKTCYCEDHVRRKGFKYDKNKPIPCPKCNYDTSVT 221

>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
            (Acinus)
          Length = 1341

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 1    KQRDKGRAGEDRERDAE*LSEKERERLDKVSALNSKEATT 120
            ++RD+G    DRERD E    +ER+R D      S+  +T
Sbjct: 1295 RERDRGDRDRDRERDRE--RGRERDRRDTKRHSRSRSRST 1332

>UVH3_ARATH (Q9ATY5) DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive|
            protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog)
            (AtUVH3) (AtXPG) (AtRAD2)
          Length = 1479

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +1

Query: 7    RDKGRAGEDRERDAE*LSEKERERLDKVSALNSKEATTHKATAFSTKEKYLCKPISELDL 186
            R +GR  +D    ++  S+ + +  DKV  L +K A   K+T       Y  K   ELD 
Sbjct: 1278 RGRGRVQKDLLELSDGSSDDDDDD-DKVVELEAKPANLQKSTRSRNPVMYSAKEDDELDE 1336

Query: 187  SNCQRCTPS 213
            S     +PS
Sbjct: 1337 SRSNEGSPS 1345

>VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6) (Glycoprotein|
            11A) (Glycoprotein 16) (Glycoprotein G130) (Glycoprotein
            B)
          Length = 932

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 28   EDRERDAE*LSEKERERLDKVSALNSKEATTHKATAFSTKEKYLCKPISELDLSNCQRCT 207
            E+ E DA  L E+ RE +  +S +++ E   HKA   +     L   +++L L   +R  
Sbjct: 862  EEEEFDAAKL-EQAREMIKYMSLVSAVERQEHKAKKSNKGGPLLATRLTQLALR--RRAP 918

Query: 208  PSYRLLP 228
            P Y+ LP
Sbjct: 919  PEYQQLP 925


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,233,199
Number of Sequences: 219361
Number of extensions: 625932
Number of successful extensions: 2344
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2296
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)