ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493857.1| Oryza sativa (japonica cultivar-group), predic... 194 1e-46
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 184 1e-43
3gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome... 184 1e-43
4gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome... 184 1e-43
5ref|XM_549869.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-10
6gb|AY224549.1| Oryza sativa (japonica cultivar-group) isolate 24... 74 3e-10
7dbj|AK121497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 7e-08
9dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 66 7e-08
10ref|XM_424986.1| PREDICTED: Gallus gallus similar to Munc13-2 pr... 48 0.016
11gb|AC133494.4| Mus musculus BAC clone RP24-443B5 from chromosome... 42 0.99
12gb|BC028966.1| Mus musculus selenophosphate synthetase 2, mRNA (... 42 0.99
13gb|BC016508.1| Mus musculus selenophosphate synthetase 2, mRNA (... 42 0.99
14gb|BC043334.1| Mus musculus selenophosphate synthetase 2, mRNA (... 42 0.99
15gb|BC003760.1| Mus musculus selenophosphate synthetase 2, mRNA (... 42 0.99
16dbj|AK149516.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 42 0.99
17dbj|AK168965.1| Mus musculus 17 days pregnant adult female amnio... 42 0.99
18dbj|AK168722.1| Mus musculus 17 days embryo kidney cDNA, RIKEN f... 42 0.99
19dbj|AK077573.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 42 0.99
20gb|BC097429.1| Rattus norvegicus cDNA clone IMAGE:7455307 42 0.99
21dbj|AK016339.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 0.99
22gb|U43285.1|MMU43285 Mus musculus selenophosphate synthetase 2 m... 42 0.99
23ref|XM_219347.3| PREDICTED: Rattus norvegicus selenophosphate sy... 42 0.99
24gb|BC081915.1| Rattus norvegicus selenophosphate synthetase 2, m... 42 0.99
25ref|NM_009266.2| Mus musculus selenophosphate synthetase 2 (Seph... 42 0.99
26emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chr... 42 0.99
27gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, co... 40 3.9
28gb|AC068797.29| Homo sapiens 12 BAC RP1-81P11 (Roswell Park Canc... 40 3.9
29dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, c... 40 3.9
30dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, c... 40 3.9
31gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 3.9
32gb|AC118062.4| Homo sapiens BAC clone RP11-637E17 from 4, comple... 40 3.9
33gb|AC073343.6| Homo sapiens BAC clone RP11-611L7 from 7, complet... 40 3.9
34gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromo... 40 3.9
35gb|AC090819.7| Homo sapiens chromosome 8, clone CTD-2544L4, comp... 40 3.9
36gb|AC079130.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 3.9
37emb|CT571260.1| Medicago truncatula chromosome 5 clone mth2-35p1... 40 3.9
38emb|AL807248.7| Mouse DNA sequence from clone RP23-400M20 on chr... 40 3.9
39dbj|AP003547.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 3.9 
>ref|XM_493857.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3171

 Score =  194 bits (98), Expect = 1e-46
 Identities = 128/138 (92%)
 Strand = Plus / Plus

                                                                       
Query: 155 acctatgcaagccaatatcagagcttgacctctcaaactgtcagcggtgtactcctagtt 214
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 740 acctatgcaagccaatatcagaacttgacctctcaaattgtcagcggtgtactccaagtt 799

                                                                       
Query: 215 accgacttctgcctaaaaattaccccgtgcctgcttcaagttgcagaactgaccttggag 274
           |||||||||||||||||||||||||  ||||| || ||||||||||||||||||||||||
Sbjct: 800 accgacttctgcctaaaaattacccaatgcctcctgcaagttgcagaactgaccttggag 859

                             
Query: 275 tctctgtgctcaatgatc 292
            ||| || ||||||||||
Sbjct: 860 cctcagttctcaatgatc 877
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
             complete sequence
          Length = 29737217

 Score =  184 bits (93), Expect = 1e-43
 Identities = 134/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                         
Query: 91    tctgcgctcaattctaaggaagccactacccacaaagctactgcgttctctaccaaagag 150
             ||||| |||||||||||||||| | ||||||||||||||||| | ||||||| |||||| 
Sbjct: 12881 tctgcactcaattctaaggaaggcgctacccacaaagctactacattctctagcaaagac 12822

                                                                         
Query: 151   aagta---cctatgcaagccaatatcagagcttgacctctcaaactgtcagcggtgtact 207
             |||||   ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 12821 aagtataacctatgcaagccaatatcagaacttgacctctcaaattgtcagcggtgtact 12762

                                        
Query: 208   cctagttaccgacttctgcctaaaaat 234
             || ||||||||||||||||||||||||
Sbjct: 12761 ccaagttaccgacttctgcctaaaaat 12735



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 242   tgcctgcttcaagttgcagaactgaccttggagtctctgtgctcaatgatc 292
             ||||| || |||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 12662 tgcctcctgcaagttgcagaactgaccttggagcctcagttctcaatgatc 12612
to top
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10,
             complete sequence
          Length = 156772

 Score =  184 bits (93), Expect = 1e-43
 Identities = 134/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                         
Query: 91    tctgcgctcaattctaaggaagccactacccacaaagctactgcgttctctaccaaagag 150
             ||||| |||||||||||||||| | ||||||||||||||||| | ||||||| |||||| 
Sbjct: 12881 tctgcactcaattctaaggaaggcgctacccacaaagctactacattctctagcaaagac 12822

                                                                         
Query: 151   aagta---cctatgcaagccaatatcagagcttgacctctcaaactgtcagcggtgtact 207
             |||||   ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 12821 aagtataacctatgcaagccaatatcagaacttgacctctcaaattgtcagcggtgtact 12762

                                        
Query: 208   cctagttaccgacttctgcctaaaaat 234
             || ||||||||||||||||||||||||
Sbjct: 12761 ccaagttaccgacttctgcctaaaaat 12735



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 242   tgcctgcttcaagttgcagaactgaccttggagtctctgtgctcaatgatc 292
             ||||| || |||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 12662 tgcctcctgcaagttgcagaactgaccttggagcctcagttctcaatgatc 12612
to top
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0098I11, complete sequence
          Length = 122970

 Score =  184 bits (93), Expect = 1e-43
 Identities = 134/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                         
Query: 91    tctgcgctcaattctaaggaagccactacccacaaagctactgcgttctctaccaaagag 150
             ||||| |||||||||||||||| | ||||||||||||||||| | ||||||| |||||| 
Sbjct: 22110 tctgcactcaattctaaggaaggcgctacccacaaagctactacattctctagcaaagac 22051

                                                                         
Query: 151   aagta---cctatgcaagccaatatcagagcttgacctctcaaactgtcagcggtgtact 207
             |||||   ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 22050 aagtataacctatgcaagccaatatcagaacttgacctctcaaattgtcagcggtgtact 21991

                                        
Query: 208   cctagttaccgacttctgcctaaaaat 234
             || ||||||||||||||||||||||||
Sbjct: 21990 ccaagttaccgacttctgcctaaaaat 21964



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 242   tgcctgcttcaagttgcagaactgaccttggagtctctgtgctcaatgatc 292
             ||||| || |||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 21891 tgcctcctgcaagttgcagaactgaccttggagcctcagttctcaatgatc 21841
to top
>ref|XM_549869.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4570

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 135  gttctctaccaaagagaagtacctatgcaagccaatatcagagcttgacctctcaaactg 194
            |||||||| |||||| |||||  ||| ||| ||  |||||||||| || || ||||| ||
Sbjct: 1098 gttctctagcaaagaaaagtatatatacaaacctgtatcagagctcgatctttcaaattg 1157

                                                         
Query: 195  tcagcggtgtactcctagttaccgacttctgcctaaaaattaccc 239
            ||||||||| ||||| |||||||| ||||| |||||| |||||||
Sbjct: 1158 tcagcggtgcactccaagttaccggcttctacctaaacattaccc 1202
to top
>gb|AY224549.1| Oryza sativa (japonica cultivar-group) isolate 24579 unknown mRNA
          Length = 543

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                       
Query: 135 gttctctaccaaagagaagtacctatgcaagccaatatcagagcttgacctctcaaactg 194
           |||||||| |||||| |||||  ||| ||| ||  |||||||||| || || ||||| ||
Sbjct: 192 gttctctagcaaagaaaagtatatatacaaacctgtatcagagctcgatctttcaaattg 251

                                                        
Query: 195 tcagcggtgtactcctagttaccgacttctgcctaaaaattaccc 239
           ||||||||| ||||| |||||||| ||||| |||||| |||||||
Sbjct: 252 tcagcggtgcactccaagttaccggcttctacctaaacattaccc 296
to top
>dbj|AK121497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033007H10, full
            insert sequence
          Length = 4570

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 88/105 (83%)
 Strand = Plus / Plus

                                                                        
Query: 135  gttctctaccaaagagaagtacctatgcaagccaatatcagagcttgacctctcaaactg 194
            |||||||| |||||| |||||  ||| ||| ||  |||||||||| || || ||||| ||
Sbjct: 1098 gttctctagcaaagaaaagtatatatacaaacctgtatcagagctcgatctttcaaattg 1157

                                                         
Query: 195  tcagcggtgtactcctagttaccgacttctgcctaaaaattaccc 239
            ||||||||| ||||| |||||||| ||||| |||||| |||||||
Sbjct: 1158 tcagcggtgcactccaagttaccggcttctacctaaacattaccc 1202
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                          
Query: 135    gttctctaccaaagagaagtacctatgcaagccaatatcagagcttgacctctcaaactg 194
              |||||||| |||||| |||||  ||| ||| ||  |||||||||| || || ||||| ||
Sbjct: 518979 gttctctagcaaagaaaagtatatatacaaacctgtatcagagctcgatctttcaaattg 518920

                                                   
Query: 195    tcagcggtgtactcctagttaccgacttctgcctaaa 231
              ||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 518919 tcagcggtgcactccaagttaccggcttctacctaaa 518883
to top
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0482C06
          Length = 182779

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                          
Query: 135    gttctctaccaaagagaagtacctatgcaagccaatatcagagcttgacctctcaaactg 194
              |||||||| |||||| |||||  ||| ||| ||  |||||||||| || || ||||| ||
Sbjct: 159180 gttctctagcaaagaaaagtatatatacaaacctgtatcagagctcgatctttcaaattg 159121

                                                   
Query: 195    tcagcggtgtactcctagttaccgacttctgcctaaa 231
              ||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 159120 tcagcggtgcactccaagttaccggcttctacctaaa 159084
to top
>ref|XM_424986.1| PREDICTED: Gallus gallus similar to Munc13-2 protein (LOC427413),
            mRNA
          Length = 15600

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 71   gagagaggcttgataaagtgtctg 94
            ||||||||||||||||||||||||
Sbjct: 8516 gagagaggcttgataaagtgtctg 8539
to top
>gb|AC133494.4| Mus musculus BAC clone RP24-443B5 from chromosome 7, complete sequence
          Length = 182616

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    tgagtgaaaaggaacgagaga 76
             |||||||||||||||||||||
Sbjct: 60429 tgagtgaaaaggaacgagaga 60409
to top
>gb|BC028966.1| Mus musculus selenophosphate synthetase 2, mRNA (cDNA clone
           MGC:36791 IMAGE:5374184), complete cds
          Length = 2208

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 674 tgagtgaaaaggaacgagaga 694
to top
>gb|BC016508.1| Mus musculus selenophosphate synthetase 2, mRNA (cDNA clone
           MGC:25303 IMAGE:4911695), complete cds
          Length = 2185

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 689 tgagtgaaaaggaacgagaga 709
to top
>gb|BC043334.1| Mus musculus selenophosphate synthetase 2, mRNA (cDNA clone
           MGC:49501 IMAGE:5100207), complete cds
          Length = 2173

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 678 tgagtgaaaaggaacgagaga 698
to top
>gb|BC003760.1| Mus musculus selenophosphate synthetase 2, mRNA (cDNA clone
           IMAGE:3600631), partial cds
          Length = 966

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 684 tgagtgaaaaggaacgagaga 704
to top
>dbj|AK149516.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730029C03
           product:selenophosphate synthetase 2, full insert
           sequence
          Length = 2174

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 694 tgagtgaaaaggaacgagaga 714
to top
>dbj|AK168965.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
           full-length enriched library, clone:I920068D10
           product:selenophosphate synthetase 2, full insert
           sequence
          Length = 2180

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 698 tgagtgaaaaggaacgagaga 718
to top
>dbj|AK168722.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched
           library, clone:I920047F21 product:selenophosphate
           synthetase 2, full insert sequence
          Length = 2176

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 698 tgagtgaaaaggaacgagaga 718
to top
>dbj|AK077573.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730453E17
           product:selenophosphate synthetase 2, full insert
           sequence
          Length = 2188

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 698 tgagtgaaaaggaacgagaga 718
to top
>gb|BC097429.1| Rattus norvegicus cDNA clone IMAGE:7455307
          Length = 2342

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 828 tgagtgaaaaggaacgagaga 848
to top
>dbj|AK016339.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930581L11 product:selenophosphate
           synthetase 2, full insert sequence
          Length = 1330

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 101 tgagtgaaaaggaacgagaga 81
to top
>gb|U43285.1|MMU43285 Mus musculus selenophosphate synthetase 2 mRNA, complete cds
          Length = 2202

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 694 tgagtgaaaaggaacgagaga 714
to top
>ref|XM_219347.3| PREDICTED: Rattus norvegicus selenophosphate synthetase 2
           (predicted) (Sephs2_predicted), mRNA
          Length = 1876

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 383 tgagtgaaaaggaacgagaga 403
to top
>gb|BC081915.1| Rattus norvegicus selenophosphate synthetase 2, mRNA (cDNA clone
           IMAGE:7112315)
          Length = 2236

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 723 tgagtgaaaaggaacgagaga 743
to top
>ref|NM_009266.2| Mus musculus selenophosphate synthetase 2 (Sephs2), mRNA
          Length = 2231

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  tgagtgaaaaggaacgagaga 76
           |||||||||||||||||||||
Sbjct: 697 tgagtgaaaaggaacgagaga 717
to top
>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete
              sequence
          Length = 204214

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 26     gggaggacagggaaagagatgctga 50
              |||||||||| ||||||||||||||
Sbjct: 119540 gggaggacagagaaagagatgctga 119564
to top
>gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, complete sequence
          Length = 232304

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aggggaggacagggaaagag 43
             ||||||||||||||||||||
Sbjct: 78768 aggggaggacagggaaagag 78787
to top
>gb|AC068797.29| Homo sapiens 12 BAC RP1-81P11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 136257

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   aaagagaagtacctatgcaa 164
             ||||||||||||||||||||
Sbjct: 93412 aaagagaagtacctatgcaa 93393
to top
>dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, complete sequences
          Length = 171989

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     aggggaggacagggaaagag 43
              ||||||||||||||||||||
Sbjct: 109939 aggggaggacagggaaagag 109920
to top
>dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, complete sequences
          Length = 182507

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   aggggaggacagggaaagag 43
            ||||||||||||||||||||
Sbjct: 9854 aggggaggacagggaaagag 9835
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 24       aggggaggacagggaaagag 43
                ||||||||||||||||||||
Sbjct: 22730424 aggggaggacagggaaagag 22730443
to top
>gb|AC118062.4| Homo sapiens BAC clone RP11-637E17 from 4, complete sequence
          Length = 107609

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    caggggaggacagggaaaga 42
             ||||||||||||||||||||
Sbjct: 99557 caggggaggacagggaaaga 99576
to top
>gb|AC073343.6| Homo sapiens BAC clone RP11-611L7 from 7, complete sequence
          Length = 173967

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    gcaggggaggacagggaaag 41
             ||||||||||||||||||||
Sbjct: 29536 gcaggggaggacagggaaag 29555
to top
>gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromosome y, complete
              sequence
          Length = 179557

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     aggggaggacagggaaagag 43
              ||||||||||||||||||||
Sbjct: 144490 aggggaggacagggaaagag 144509
to top
>gb|AC090819.7| Homo sapiens chromosome 8, clone CTD-2544L4, complete sequence
          Length = 208961

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    agagatgctgaataactgag 59
             ||||||||||||||||||||
Sbjct: 62366 agagatgctgaataactgag 62347
to top
>gb|AC079130.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446E21, complete
             sequence
          Length = 190587

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tgacctctcaaactgtcagc 199
             ||||||||||||||||||||
Sbjct: 66061 tgacctctcaaactgtcagc 66080
to top
>emb|CT571260.1| Medicago truncatula chromosome 5 clone mth2-35p14, COMPLETE SEQUENCE
          Length = 120436

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 175    gagcttgacctctcaaactgtcagcggtgtactcctagttaccg 218
              ||||| ||||| || |||||| |||| || ||||||||||||||
Sbjct: 100984 gagctggacctttctaactgtgagcgatgcactcctagttaccg 101027
to top
>emb|AL807248.7| Mouse DNA sequence from clone RP23-400M20 on chromosome X, complete
              sequence
          Length = 190178

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    aaagagaagtacctatgcaa 164
              ||||||||||||||||||||
Sbjct: 140296 aaagagaagtacctatgcaa 140315
to top
>dbj|AP003547.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1399D2
          Length = 169660

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    agagatgctgaataactgag 59
             ||||||||||||||||||||
Sbjct: 67603 agagatgctgaataactgag 67584


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,404,643
Number of Sequences: 3902068
Number of extensions: 2404643
Number of successful extensions: 42245
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42160
Number of HSP's gapped (non-prelim): 82
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top