ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15d08 |
|---|---|
| Clone Library Name | barley_pub |
>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3| precursor (hLRp105) Length = 770 Score = 34.7 bits (78), Expect = 0.11 Identities = 19/46 (41%), Positives = 21/46 (45%) Frame = +3 Query: 54 GQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRGETLAAAD 191 GQI L+T + L L P G P PPAP G T AA D Sbjct: 620 GQIPLLTAARPSQTVLGDGFLQPAPGAAPDPPAPLMDTGSTRAAGD 665
>B3GA2_CANFA (Q5CAZ6) Galactosylgalactosylxylosylprotein| 3-beta-glucuronosyltransferase 2 (EC 2.4.1.135) (Beta-1,3-glucuronyltransferase 2) (Glucuronosyltransferase-S) (GlcAT-S) (UDP-glucuronosyltransferase-S) (GlcAT-D) Length = 329 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/42 (38%), Positives = 17/42 (40%) Frame = -3 Query: 157 VGAGGHGVPPTRGARLEGARGRWRWTEVVTREICPAPNPPLP 32 VG GG +PP RG G W P P PPLP Sbjct: 45 VGRGGARLPPRRGGPDSGPGRGWEKRNESRPHARPRPEPPLP 86
>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (FRGY2 homolog) Length = 360 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/58 (32%), Positives = 23/58 (39%) Frame = +3 Query: 9 PNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRGETLA 182 P + G GG GA T +H P P + A GTP PPA + LA Sbjct: 37 PQKAGGGAGGGG-GAASGPAAGTPLHAPGPRTPGNQATAASGTPAPPARSQADKPVLA 93
>MYSA_DROME (P05661) Myosin heavy chain, muscle| Length = 1962 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 14/60 (23%) Frame = +2 Query: 266 AADNDLEEKLKDVGARL--------------QEAPPDSEGLLKLLDDVEKNLMNVEQSPA 403 A NDLE +L+D+ RL ++A + GL K ++D+E N+ EQ A Sbjct: 909 AQKNDLENQLRDIQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKA 968
>VASP_HUMAN (P50552) Vasodilator-stimulated phosphoprotein (VASP)| Length = 379 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 7/63 (11%) Frame = +3 Query: 3 PHPNRVPSWKGSGGLGAGQISLV-------TTSVHRHLPLAPSSLAPRVGGTPCPPAPTS 161 P P +P+W G ++ + + R + A AP GG P PP P Sbjct: 118 PPPPALPTWSVPNGPSPEEVEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPP 177 Query: 162 PRG 170 P G Sbjct: 178 PPG 180
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Frame = +3 Query: 12 NRVPSWKGSGGLGAGQISLVTTSVHRHLPLAP-----SSLAPRVGGTPCPPAPTSP 164 N+ PS G+ +G GQ T +P A + L P+ PCPP SP Sbjct: 797 NQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCPPVTQSP 852
>PCDA2_HUMAN (Q9Y5H9) Protocadherin alpha 2 precursor (PCDH-alpha2)| Length = 948 Score = 29.3 bits (64), Expect = 4.6 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 8/41 (19%) Frame = -3 Query: 136 VPPTRGARLEG--------ARGRWRWTEVVTREICPAPNPP 38 VPPT GAR G A G W +++ + +C +PP Sbjct: 725 VPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPP 765
>ADPGK_HUMAN (Q9BRR6) ADP-dependent glucokinase (EC 2.7.1.147) (ADPGK) (ADP-GK)| (RbBP-35) Length = 497 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Frame = +3 Query: 27 WKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRV------GGTPCPPAPTSPRGETLAAA 188 W+GS AG ++L V P P S + G P PP P SP G AA Sbjct: 4 WRGSAY--AGFLALAVGCVFLLEPELPGSALRSLWSSLCLGPAPAPPGPVSPEGRLAAAW 61 Query: 189 D 191 D Sbjct: 62 D 62
>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| Length = 533 Score = 29.3 bits (64), Expect = 4.6 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +3 Query: 93 LPLAPSSLAPRVGGTPCPPAPTSP 164 LPL PSS AP +GG+ PP P P Sbjct: 103 LPLPPSS-APTLGGSGAPPPPPMP 125
>VSX1_BOVIN (Q9GMA3) Visual system homeobox 1 (Transcription factor VSX1)| (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX) Length = 365 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 96 PLAPSSLAPRVGGTPCPPAPTSPRGETLAAAD 191 P P LAPR G P P A R E+++ +D Sbjct: 111 PEGPEPLAPRFPGRPPPSAARQKRSESVSTSD 142
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/57 (33%), Positives = 25/57 (43%) Frame = +3 Query: 9 PNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRGETL 179 P+ +P G G A ++V LP A P GTP PP PT+P T+ Sbjct: 1153 PSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPDP---GTPLPPDPTAPSPGTV 1206
>TLX2_HUMAN (O43763) T-cell leukemia homeobox protein 2 (Homeobox protein| Hox-11L1) (Neural crest homeobox protein) Length = 284 Score = 28.9 bits (63), Expect = 6.0 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 33 GSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRG 170 GS G+G G + + HR LP+ P + GG P P P+ G Sbjct: 71 GSSGVGPGGV--IRVPAHRPLPVPPPA-----GGAPAVPGPSGLGG 109
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 28.9 bits (63), Expect = 6.0 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = +3 Query: 24 SWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRGETL 179 SWK LG G SV R PL P +GGT PP P+ R +T+ Sbjct: 590 SWKTFFALGRGP------SVPRKKPL------PWLGGTRAPPQPSGSRPDTV 629
>ANC1_CAEEL (Q9N4M4) Nuclear anchorage protein 1 (Anchorage 1 protein) (Nesprin| homolog) Length = 8545 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 260 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 391 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 7926 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 7973 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 260 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 391 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 7023 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 7070 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 260 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 391 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 6120 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 6167 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 260 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 391 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 5217 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 5264 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 260 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 391 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 4263 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 4310 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 260 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 391 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 3360 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 3407
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/57 (33%), Positives = 25/57 (43%) Frame = +3 Query: 9 PNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRGETL 179 P+ +P G G A ++V LP A P GTP PP PT+P T+ Sbjct: 1154 PSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPDP---GTPLPPDPTAPSPGTV 1207
>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein| 5.6) (Ultrahigh sulfur keratin-associated protein 5.6) Length = 129 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +1 Query: 385 CGTIACSKHICCCSPSNGC 441 C I C K +CCC P+ C Sbjct: 29 CVPICCCKPVCCCVPACSC 47
>KR511_HUMAN (Q6L8G4) Keratin-associated protein 5-11 (Keratin-associated| protein 5.11) (Ultrahigh sulfur keratin-associated protein 5.11) Length = 156 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +1 Query: 385 CGTIACSKHICCCSPSNGC 441 C I C K +CCC P+ C Sbjct: 36 CVPICCCKPVCCCVPACSC 54
>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein| 5.8) (Ultrahigh sulfur keratin-associated protein 5.8) (Keratin, ultra high-sulfur matrix protein B) (UHS keratin B) (UHS KerB) Length = 187 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +1 Query: 385 CGTIACSKHICCCSPSNGC 441 C I C K +CCC P+ C Sbjct: 29 CVPICCCKPVCCCVPACSC 47
>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein| 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) Length = 288 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +1 Query: 385 CGTIACSKHICCCSPSNGC 441 C I C K +CCC P+ C Sbjct: 50 CVPICCCKPVCCCVPACSC 68
>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein| 5.9) (Ultrahigh sulfur keratin-associated protein 5.9) (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra high-sulfur matrix protein A) (UHS keratin A) (UHS KerA) Length = 169 Score = 28.5 bits (62), Expect = 7.9 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = +1 Query: 385 CGTIACSKHICCCSPSNGC 441 C + C K +CCC P+ C Sbjct: 36 CAPVYCCKPVCCCVPACSC 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,866,035 Number of Sequences: 219361 Number of extensions: 761073 Number of successful extensions: 5059 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5038 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
