Clone Name | bastl15d08 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 211 tccgggcggcccgcgccccgat 232 |||||||||||||||||||||| Sbjct: 1754152 tccgggcggcccgcgccccgat 1754131
>dbj|AB073159.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:T2P22 Length = 81019 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 caccacctccgtccaccgccacctcc 96 ||||||||||||||||| |||||||| Sbjct: 75561 caccacctccgtccaccaccacctcc 75586
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 ggggaaaccctagcggctgcagatc 192 ||||||||||||||||| ||||||| Sbjct: 74666 ggggaaaccctagcggcggcagatc 74690
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08, complete sequence Length = 115026 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 ggggaaaccctagcggctgcagatc 192 ||||||||||||||||| ||||||| Sbjct: 30967 ggggaaaccctagcggcggcagatc 30991
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 ggggaaaccctagcggctgcagatc 192 ||||||||||||||||| ||||||| Sbjct: 26792727 ggggaaaccctagcggcggcagatc 26792751
>emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chromosome 2, complete sequence Length = 156705 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 ctcctgcccccacctcgccgc 165 ||||||||||||||||||||| Sbjct: 118688 ctcctgcccccacctcgccgc 118668
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cccgatccgggcggcccgcg 225 |||||||||||||||||||| Sbjct: 2854082 cccgatccgggcggcccgcg 2854063
>gb|AY555191.1| Homo sapiens apolipoprotein A-V (APOA5), apolipoprotein A-IV (APOA4), apolipoprotein C-III (APOC3), and apolipoprotein A-I (APOA1) genes, complete cds Length = 49331 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gggacgccgtgtcctcctgc 151 |||||||||||||||||||| Sbjct: 24560 gggacgccgtgtcctcctgc 24541
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ctccgtccaccgccacctcc 96 |||||||||||||||||||| Sbjct: 18037526 ctccgtccaccgccacctcc 18037507
>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete sequence Length = 131589 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ctccgtccaccgccacctcc 96 |||||||||||||||||||| Sbjct: 78675 ctccgtccaccgccacctcc 78694
>gb|AC122490.3| Mus musculus BAC clone RP24-388D8 from chromosome 3, complete sequence Length = 140465 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 gggggttgggagcgggacaaatct 63 ||||||||||||||||||| |||| Sbjct: 66296 gggggttgggagcgggacagatct 66319
>ref|XM_546640.2| PREDICTED: Canis familiaris similar to zinc finger protein 287 (LOC489521), mRNA Length = 2457 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 agaaaaatctcatgaatgtg 388 |||||||||||||||||||| Sbjct: 1515 agaaaaatctcatgaatgtg 1534
>emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on chromosome 9 Contains the 5' end of the GPR51 gene for G protein-coupled receptor 51 (HG20, GABBR2, GPRC3B, GABABR2), the 3' end of a novel gene (FLJ36928), a CDC10 cell division cycle 10 homolog (S. cerevisiae) (SEPT7) pseudogene and a CpG island, complete sequence Length = 165358 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 agcaagcacatttgctgctg 422 |||||||||||||||||||| Sbjct: 35134 agcaagcacatttgctgctg 35153
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aggatgtcggcgcccgcctg 316 |||||||||||||||||||| Sbjct: 300233 aggatgtcggcgcccgcctg 300252
>gb|AC087065.4| Homo sapiens chromosome 22 clone cos6 map 22q11, complete sequence Length = 40752 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gggacgccgtgtcctcctgc 151 |||||||||||||||||||| Sbjct: 37270 gggacgccgtgtcctcctgc 37289
>gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map 11q23, complete sequence Length = 188963 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gggacgccgtgtcctcctgc 151 |||||||||||||||||||| Sbjct: 99515 gggacgccgtgtcctcctgc 99496
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ctccgtccaccgccacctcc 96 |||||||||||||||||||| Sbjct: 18031067 ctccgtccaccgccacctcc 18031048
>gb|AE004697.1| Pseudomonas aeruginosa PAO1, section 258 of 529 of the complete genome Length = 10113 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 ctgctcaagctcctcgacga 363 |||||||||||||||||||| Sbjct: 7041 ctgctcaagctcctcgacga 7060
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 aggatgtcggcgcccgcctgcagg 320 ||||||||| |||||||||||||| Sbjct: 4042599 aggatgtcgccgcccgcctgcagg 4042576
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgcccgcctgcaggaggcgc 326 |||||||||||||||||||| Sbjct: 4132944 cgcccgcctgcaggaggcgc 4132925
>dbj|AP006216.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-87O6, complete sequence Length = 177334 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gggacgccgtgtcctcctgc 151 |||||||||||||||||||| Sbjct: 103024 gggacgccgtgtcctcctgc 103005
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ggagaaactcaaggatgtcg 305 |||||||||||||||||||| Sbjct: 1073056 ggagaaactcaaggatgtcg 1073075 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,079,638 Number of Sequences: 3902068 Number of extensions: 3079638 Number of successful extensions: 69168 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68610 Number of HSP's gapped (non-prelim): 558 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)