ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000264.1| Jannaschia sp. CCS1, complete genome 44 0.39
2dbj|AB073159.1| Arabidopsis thaliana DNA, chromosome 4 centromer... 44 0.39
3gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
4gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
6emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chr... 42 1.5
7gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.0
8gb|AY555191.1| Homo sapiens apolipoprotein A-V (APOA5), apolipop... 40 6.0
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.0
10gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genom... 40 6.0
11gb|AC122490.3| Mus musculus BAC clone RP24-388D8 from chromosome... 40 6.0
12ref|XM_546640.2| PREDICTED: Canis familiaris similar to zinc fin... 40 6.0
13emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on ch... 40 6.0
14emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 6.0
15gb|AC087065.4| Homo sapiens chromosome 22 clone cos6 map 22q11, ... 40 6.0
16gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map... 40 6.0
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
18gb|AE004697.1| Pseudomonas aeruginosa PAO1, section 258 of 529 o... 40 6.0
19dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.0
20dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.0
21dbj|AP006216.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 6.0
22emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 6.0

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 211     tccgggcggcccgcgccccgat 232
               ||||||||||||||||||||||
Sbjct: 1754152 tccgggcggcccgcgccccgat 1754131



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>dbj|AB073159.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC
             clone:T2P22
          Length = 81019

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 71    caccacctccgtccaccgccacctcc 96
             ||||||||||||||||| ||||||||
Sbjct: 75561 caccacctccgtccaccaccacctcc 75586



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>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
             complete sequence
          Length = 122120

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   ggggaaaccctagcggctgcagatc 192
             ||||||||||||||||| |||||||
Sbjct: 74666 ggggaaaccctagcggcggcagatc 74690



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>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
             complete sequence
          Length = 115026

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   ggggaaaccctagcggctgcagatc 192
             ||||||||||||||||| |||||||
Sbjct: 30967 ggggaaaccctagcggcggcagatc 30991



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 168      ggggaaaccctagcggctgcagatc 192
                ||||||||||||||||| |||||||
Sbjct: 26792727 ggggaaaccctagcggcggcagatc 26792751



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>emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chromosome 2, complete
              sequence
          Length = 156705

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 145    ctcctgcccccacctcgccgc 165
              |||||||||||||||||||||
Sbjct: 118688 ctcctgcccccacctcgccgc 118668



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     cccgatccgggcggcccgcg 225
               ||||||||||||||||||||
Sbjct: 2854082 cccgatccgggcggcccgcg 2854063



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>gb|AY555191.1| Homo sapiens apolipoprotein A-V (APOA5), apolipoprotein A-IV (APOA4),
             apolipoprotein C-III (APOC3), and apolipoprotein A-I
             (APOA1) genes, complete cds
          Length = 49331

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gggacgccgtgtcctcctgc 151
             ||||||||||||||||||||
Sbjct: 24560 gggacgccgtgtcctcctgc 24541



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       ctccgtccaccgccacctcc 96
                ||||||||||||||||||||
Sbjct: 18037526 ctccgtccaccgccacctcc 18037507



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>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete
             sequence
          Length = 131589

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ctccgtccaccgccacctcc 96
             ||||||||||||||||||||
Sbjct: 78675 ctccgtccaccgccacctcc 78694



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>gb|AC122490.3| Mus musculus BAC clone RP24-388D8 from chromosome 3, complete sequence
          Length = 140465

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gggggttgggagcgggacaaatct 63
             ||||||||||||||||||| ||||
Sbjct: 66296 gggggttgggagcgggacagatct 66319



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>ref|XM_546640.2| PREDICTED: Canis familiaris similar to zinc finger protein 287
            (LOC489521), mRNA
          Length = 2457

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 369  agaaaaatctcatgaatgtg 388
            ||||||||||||||||||||
Sbjct: 1515 agaaaaatctcatgaatgtg 1534



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>emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on chromosome 9 Contains the
             5' end of the GPR51 gene for G protein-coupled receptor 51
             (HG20, GABBR2, GPRC3B, GABABR2), the 3' end of a novel
             gene (FLJ36928), a CDC10 cell division cycle 10 homolog
             (S. cerevisiae) (SEPT7) pseudogene and a CpG island,
             complete sequence
          Length = 165358

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   agcaagcacatttgctgctg 422
             ||||||||||||||||||||
Sbjct: 35134 agcaagcacatttgctgctg 35153



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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    aggatgtcggcgcccgcctg 316
              ||||||||||||||||||||
Sbjct: 300233 aggatgtcggcgcccgcctg 300252



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>gb|AC087065.4| Homo sapiens chromosome 22 clone cos6 map 22q11, complete sequence
          Length = 40752

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   gggacgccgtgtcctcctgc 151
             ||||||||||||||||||||
Sbjct: 37270 gggacgccgtgtcctcctgc 37289



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>gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map 11q23, complete
             sequence
          Length = 188963

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gggacgccgtgtcctcctgc 151
             ||||||||||||||||||||
Sbjct: 99515 gggacgccgtgtcctcctgc 99496



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       ctccgtccaccgccacctcc 96
                ||||||||||||||||||||
Sbjct: 18031067 ctccgtccaccgccacctcc 18031048



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>gb|AE004697.1| Pseudomonas aeruginosa PAO1, section 258 of 529 of the complete
            genome
          Length = 10113

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  ctgctcaagctcctcgacga 363
            ||||||||||||||||||||
Sbjct: 7041 ctgctcaagctcctcgacga 7060



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 297     aggatgtcggcgcccgcctgcagg 320
               ||||||||| ||||||||||||||
Sbjct: 4042599 aggatgtcgccgcccgcctgcagg 4042576



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     cgcccgcctgcaggaggcgc 326
               ||||||||||||||||||||
Sbjct: 4132944 cgcccgcctgcaggaggcgc 4132925



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>dbj|AP006216.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-87O6, complete
              sequence
          Length = 177334

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    gggacgccgtgtcctcctgc 151
              ||||||||||||||||||||
Sbjct: 103024 gggacgccgtgtcctcctgc 103005



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 286     ggagaaactcaaggatgtcg 305
               ||||||||||||||||||||
Sbjct: 1073056 ggagaaactcaaggatgtcg 1073075


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,079,638
Number of Sequences: 3902068
Number of extensions: 3079638
Number of successful extensions: 69168
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68610
Number of HSP's gapped (non-prelim): 558
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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