>MENC_SYNY3 (Q55117) Probable O-succinylbenzoate synthase (EC 4.2.1.-) (OSB|
           synthase) (OSBS) (4-(2'-carboxyphenyl)-4-oxybutyric acid
           synthase) (O-succinylbenzoic acid synthase)
          Length = 320

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +2

Query: 302 LDDFCSITIDGSGGLSDDILQQRLQSIVRQRE 397
           L + C I +D +GGLS DI QQ L  + RQRE
Sbjct: 163 LPEGCQIRLDANGGLSVDIAQQWLTLLDRQRE 194

>Y004_MYCSM (Q50434) UPF0232 protein in recF-gyrB intergenic region|
          Length = 194

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
 Frame = -1

Query: 340 TAPIDGDRAEV-----VQPSRLILVDGPALGLRHLHALRGILGAIGAERGVGDGAPLLAR 176
           T P D D  E        P  L  + G  L  R L   RG   + G + G G   P  AR
Sbjct: 2   TGPFDDDGPEEDAPVPAPPDHLAGLRGIDLVRRTLEEARGAARSQGKDVGRGRSGP--AR 59

Query: 175 RRGLHFASLAGSGPAPTAPD--------RDLAAGLGFS 86
           R G +      SGP P A D        +DLA   G+S
Sbjct: 60  RVGGNRRRRTWSGPGPDARDPQLLGAVTQDLAKSRGWS 97

>HSP7M_PEA (P37900) Heat shock 70 kDa protein, mitochondrial precursor|
          Length = 675

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 284 QDESGGLDDFCSITIDGSGGLSDDILQQRLQ--SIVRQREELQQVEIDLRAQA 436
           +D+S G +    ITI  SGGLSDD + + ++   +  QR++ ++  ID+R  A
Sbjct: 533 KDKSTGKEQ--QITIRSSGGLSDDEIDKMVKEAELHAQRDQERKALIDIRNSA 583

>RS4_THEAC (Q9HJD7) 30S ribosomal protein S4P|
          Length = 199

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 206 APLRTNGAEDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDDILQQRLQSIV 385
           A LRTN      +  +M +   R     E+  LDD  S+T+       ++IL +RLQ+IV
Sbjct: 60  ARLRTNDVNAQKQLERMIKRLNRYKLLSENATLDDVLSLTV-------ENILDRRLQTIV 112

>DNAK_HALSA (Q9HRY2) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 629

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +2

Query: 197 VPDAPLRTNGAEDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDDILQQRLQ 376
           +P AP  T   E   E      ++G    + E  G  +  SITI+G  GLSD+ + +  +
Sbjct: 435 IPPAPAGTPQIEVTFE----IDADGIVNVEAEDQGSGNAESITIEGGAGLSDEQIDEMQE 490

Query: 377 SIVRQREELQQ 409
                 EE +Q
Sbjct: 491 DAEAHAEEDEQ 501

>DNAK_HALMA (Q01100) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 635

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 293 SGGLDDFCSITIDGSGGLSDDILQQRLQSIVRQREELQQ 409
           SG  +D   ITI+G  GLSDD +++  Q   +  EE +Q
Sbjct: 466 SGNKED---ITIEGGAGLSDDQIEEMQQEAEQHAEEDEQ 501

>VPS54_YEAST (Q12071) Vacuolar protein sorting protein 54 (CPF1 genetically|
           interacting protein 1) (Temperature-sensitive clathrin
           synthetic mutation protein 3)
          Length = 889

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 215 RTNGAEDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDDIL 361
           ++ G + AA R K+   EG      +SG      S TI+G   L+DD+L
Sbjct: 10  KSQGLQKAAGRPKIVVPEGSPSRNSDSG------SFTIEGDTSLNDDLL 52

>MURD_XANCP (Q8P775) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 468

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -1

Query: 250 HALRGILGAIGAERGV---GDGAPLLAR-----RRGLHFASLAGSGPA 131
           HA++    A+GA+ GV     GAP          RG HFA LAG  PA
Sbjct: 410 HAMQLARSALGAQGGVLLLSPGAPSFGVYSDYVARGRHFAQLAGFDPA 457

>MURD_XANC8 (Q4UWX9) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 468

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -1

Query: 250 HALRGILGAIGAERGV---GDGAPLLAR-----RRGLHFASLAGSGPA 131
           HA++    A+GA+ GV     GAP          RG HFA LAG  PA
Sbjct: 410 HAMQLARSALGAQGGVLLLSPGAPSFGVYSDYVARGRHFAQLAGFDPA 457

>PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D (Protein|
           phosphatase 1, regulatory subunit 6) (Protein
           phosphatase 1-binding subunit R6)
          Length = 299

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 296 PTHPGRWPCPRTAPSSCAPR 237
           P  PGR P P  APS C PR
Sbjct: 44  PGSPGRAPPPTPAPSGCDPR 63

>TIMP4_MOUSE (Q9JHB3) Metalloproteinase inhibitor 4 precursor (TIMP-4) (Tissue|
           inhibitor of metalloproteinases-4)
          Length = 224

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 278 WPCPRTAPSSCAPRHPRRHW 219
           WP  R    SCAP HP++H+
Sbjct: 22  WPPGRGEACSCAPAHPQQHF 41

>VSID_BPP4 (P05461) Glycoprotein 3 (Capsid size determination protein)|
          Length = 244

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +2

Query: 230 EDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDDILQQRLQSIVRQREELQQ 409
           ++    ++ A+ E  A+ Q +    DD+ +      G LSD++ Q+ ++ + R RE +Q+
Sbjct: 32  DETVTAIERAEQEKNALAQADGNDADDWRTAFRAAGGVLSDELKQRHIERVAR-RELVQE 90

Query: 410 VE 415
            +
Sbjct: 91  YD 92

>PDC1_MAIZE (P28516) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (PDC)|
          Length = 610

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 322 DRAEVVQPSRLILVDGPALG 263
           ++A +VQP R+++ DGPA G
Sbjct: 349 EKAVIVQPDRMVVGDGPAFG 368

>Y310_HALSA (Q9HSB6) UPF0245 protein Vng0310c|
          Length = 387

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 200 PDAPLRTNGAEDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDD 355
           PD   RT    DAA+R  +A S       +E+G  D  C   +D    L+DD
Sbjct: 190 PDEIRRTVSVRDAADREHLALSTATITTIEEAGSADRVC---VDTGSLLADD 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,434,812
Number of Sequences: 219361
Number of extensions: 835475
Number of successful extensions: 4414
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4408
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)