ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111306.1| Zea mays CL10099_1 mRNA sequence 246 5e-62
2ref|XM_483606.1| Oryza sativa (japonica cultivar-group), mRNA 212 7e-52
3dbj|AK066525.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 7e-52
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
5dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
6dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
7gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 46 0.098
8gb|AE009472.1| Brucella melitensis 16M chromosome I, section 29 ... 46 0.098
9gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 46 0.098
10emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 46 0.098
11gb|BC070906.1| Rattus norvegicus v-maf musculoaponeurotic fibros... 44 0.39
12ref|NM_145673.2| Rattus norvegicus v-maf musculoaponeurotic fibr... 44 0.39
13gb|AF461686.1| Rattus norvegicus strain NEDH MAFK mRNA, complete... 44 0.39
14gb|AF305872.2| Homo sapiens chromosome 8 clone CTD-2182N23 map 8... 42 1.5
15gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q... 42 1.5
16gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L... 42 1.5
17emb|Y18319.1|SLAP18319 Homo sapiens SLAP gene, clone SEQ.A1 42 1.5
18gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.0
19ref|XM_587665.2| PREDICTED: Bos taurus similar to testis specifi... 40 6.0
20gb|AY650399.1| Homo sapiens cell division cycle 34 (CDC34) gene,... 40 6.0
21gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.0
22gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 6.0
23ref|XM_843888.1| PREDICTED: Canis familiaris similar to keratin ... 40 6.0
24ref|XM_548513.2| PREDICTED: Canis familiaris similar to keratin ... 40 6.0
25ref|XM_844678.1| PREDICTED: Canis familiaris similar to keratin ... 40 6.0
26ref|XM_544928.2| PREDICTED: Canis familiaris similar to keratin ... 40 6.0
27gb|AC130551.4| Mus musculus BAC clone RP24-538J2 from chromosome... 40 6.0
28emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete ch... 40 6.0
29gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, com... 40 6.0
30gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.0
31emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.0
32emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segmen... 40 6.0
33emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.0
34dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 6.0
35dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 6.0
36gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.0
37gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 6.0
38gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.0
39gb|AC011531.7|AC011531 Homo sapiens chromosome 19 clone LLNLR-23... 40 6.0
40dbj|AK110437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
41emb|AL583844.11| Human DNA sequence from clone RP11-365D9 on chr... 40 6.0
42gb|U77912.1|MBU77912 Mycobacterium bovis MBE50a gene, partial cd... 40 6.0
43gb|AF478411.1| Chlamydomonas reinhardtii iron transporter Ftr1 (... 40 6.0
44emb|AL773582.6| Mouse DNA sequence from clone RP23-174J23 on chr... 40 6.0 
>gb|AY111306.1| Zea mays CL10099_1 mRNA sequence
          Length = 649

 Score =  246 bits (124), Expect = 5e-62
 Identities = 246/287 (85%)
 Strand = Plus / Plus

                                                                       
Query: 161 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcacc 220
           |||||| ||||||  |||||||||||||||||||||| ||||||| || |||||||| ||
Sbjct: 240 atggagcccgcgggcgcgcgcaaggagtggcgcgccgnccccgactcctcgctccgctcc 299

                                                                       
Query: 221 aatggcgccgaggatgccgcggagcgcatgaagatggcgcagtccgagggcagggccatc 280
           ||||||||||||||||||||||||| |  |||| ||| |||||| ||||   | || |||
Sbjct: 300 aatggcgccgaggatgccgcggagcacgggaagctggggcagtcggaggaacgagctatc 359

                                                                       
Query: 281 taccaggatgagtcgggagggctggacgacttctgctcgatcaccatcgatgggagcggt 340
           ||| |||| | | |||| || ||||| ||||||||| | |||||||| ||||||||||| 
Sbjct: 360 tacgaggaaggggcgggtggactggaggacttctgcgccatcaccattgatgggagcgga 419

                                                                       
Query: 341 gggctcagcgatgacatcctgcagcagcgcctgcagagcatcgtgcggcagcgggaggag 400
           ||||||||||| ||||||||||||||||||||||||||| | ||||||||  ||||| ||
Sbjct: 420 gggctcagcgaggacatcctgcagcagcgcctgcagagcgttgtgcggcaaagggagcag 479

                                                          
Query: 401 ctgcagcaggtcgagatcgatctgcgcgcacaggccatcgcccaccc 447
           ||||||||||||||||| || ||||| || |||||||| || |||||
Sbjct: 480 ctgcagcaggtcgagatggagctgcgtgcgcaggccattgcacaccc 526
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>ref|XM_483606.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3172

 Score =  212 bits (107), Expect = 7e-52
 Identities = 242/287 (84%)
 Strand = Plus / Plus

                                                                       
Query: 161 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcacc 220
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 293 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 352

                                                                       
Query: 221 aatggcgccgaggatgccgcggagcgcatgaagatggcgcagtccgagggcagggccatc 280
           ||||||||||| ||| ||| |||||     ||||||| ||| ||||||| ||| ||||| 
Sbjct: 353 aatggcgccgacgatcccggggagcatggcaagatggggcaatccgaggacagagccatg 412

                                                                       
Query: 281 taccaggatgagtcgggagggctggacgacttctgctcgatcaccatcgatgggagcggt 340
           ||| |||| | |   ||| | ||||| || | |||||||||||||||||| || ||||| 
Sbjct: 413 tacgaggacgggggtggaagactggatgattactgctcgatcaccatcgacggaagcggg 472

                                                                       
Query: 341 gggctcagcgatgacatcctgcagcagcgcctgcagagcatcgtgcggcagcgggaggag 400
           || |||||||| |||||| | |||||||||||||||||| ||||||  ||||||||||||
Sbjct: 473 ggcctcagcgaggacatcatccagcagcgcctgcagagcgtcgtgcatcagcgggaggag 532

                                                          
Query: 401 ctgcagcaggtcgagatcgatctgcgcgcacaggccatcgcccaccc 447
           || |||| | | ||||| || ||||| || |||| ||||||||||||
Sbjct: 533 cttcagcggcttgagatggagctgcgagctcaggtcatcgcccaccc 579
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>dbj|AK066525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072L17, full
           insert sequence
          Length = 3173

 Score =  212 bits (107), Expect = 7e-52
 Identities = 242/287 (84%)
 Strand = Plus / Plus

                                                                       
Query: 161 atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcacc 220
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 293 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 352

                                                                       
Query: 221 aatggcgccgaggatgccgcggagcgcatgaagatggcgcagtccgagggcagggccatc 280
           ||||||||||| ||| ||| |||||     ||||||| ||| ||||||| ||| ||||| 
Sbjct: 353 aatggcgccgacgatcccggggagcatggcaagatggggcaatccgaggacagagccatg 412

                                                                       
Query: 281 taccaggatgagtcgggagggctggacgacttctgctcgatcaccatcgatgggagcggt 340
           ||| |||| | |   ||| | ||||| || | |||||||||||||||||| || ||||| 
Sbjct: 413 tacgaggacgggggtggaagactggatgattactgctcgatcaccatcgacggaagcggg 472

                                                                       
Query: 341 gggctcagcgatgacatcctgcagcagcgcctgcagagcatcgtgcggcagcgggaggag 400
           || |||||||| |||||| | |||||||||||||||||| ||||||  ||||||||||||
Sbjct: 473 ggcctcagcgaggacatcatccagcagcgcctgcagagcgtcgtgcatcagcgggaggag 532

                                                          
Query: 401 ctgcagcaggtcgagatcgatctgcgcgcacaggccatcgcccaccc 447
           || |||| | | ||||| || ||||| || |||| ||||||||||||
Sbjct: 533 cttcagcggcttgagatggagctgcgagctcaggtcatcgcccaccc 579
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  125 bits (63), Expect = 1e-25
 Identities = 69/71 (97%)
 Strand = Plus / Minus

                                                                            
Query: 161      atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcacc 220
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 27209483 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 27209424

                           
Query: 221      aatggcgccga 231
                |||||||||||
Sbjct: 27209423 aatggcgccga 27209413



 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Minus

                                                                            
Query: 313      ctgctcgatcaccatcgatgggagcggtgggctcagcgatgacatcctgcagcagcgcct 372
                |||||||||||||||||| || ||||| || |||||||| |||||| | |||||||||||
Sbjct: 27209108 ctgctcgatcaccatcgacggaagcgggggcctcagcgaggacatcatccagcagcgcct 27209049

                                                                            
Query: 373      gcagagcatcgtgcggcagcgggaggagctgcagcaggtcgagatcgatctgcgcgcaca 432
                ||||||| ||||||  |||||||||||||| |||| | | ||||| || ||||| || ||
Sbjct: 27209048 gcagagcgtcgtgcatcagcgggaggagcttcagcggcttgagatggagctgcgagctca 27208989

                               
Query: 433      ggccatcgcccaccc 447
                || ||||||||||||
Sbjct: 27208988 ggtcatcgcccaccc 27208974
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>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1521_G02
          Length = 117964

 Score =  125 bits (63), Expect = 1e-25
 Identities = 69/71 (97%)
 Strand = Plus / Minus

                                                                          
Query: 161    atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcacc 220
              ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 110516 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 110457

                         
Query: 221    aatggcgccga 231
              |||||||||||
Sbjct: 110456 aatggcgccga 110446



 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Minus

                                                                          
Query: 313    ctgctcgatcaccatcgatgggagcggtgggctcagcgatgacatcctgcagcagcgcct 372
              |||||||||||||||||| || ||||| || |||||||| |||||| | |||||||||||
Sbjct: 110141 ctgctcgatcaccatcgacggaagcgggggcctcagcgaggacatcatccagcagcgcct 110082

                                                                          
Query: 373    gcagagcatcgtgcggcagcgggaggagctgcagcaggtcgagatcgatctgcgcgcaca 432
              ||||||| ||||||  |||||||||||||| |||| | | ||||| || ||||| || ||
Sbjct: 110081 gcagagcgtcgtgcatcagcgggaggagcttcagcggcttgagatggagctgcgagctca 110022

                             
Query: 433    ggccatcgcccaccc 447
              || ||||||||||||
Sbjct: 110021 ggtcatcgcccaccc 110007
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>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0623F08
          Length = 154540

 Score =  125 bits (63), Expect = 1e-25
 Identities = 69/71 (97%)
 Strand = Plus / Minus

                                                                         
Query: 161   atggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcacc 220
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 32686 atggacgccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctcc 32627

                        
Query: 221   aatggcgccga 231
             |||||||||||
Sbjct: 32626 aatggcgccga 32616



 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Minus

                                                                         
Query: 313   ctgctcgatcaccatcgatgggagcggtgggctcagcgatgacatcctgcagcagcgcct 372
             |||||||||||||||||| || ||||| || |||||||| |||||| | |||||||||||
Sbjct: 32311 ctgctcgatcaccatcgacggaagcgggggcctcagcgaggacatcatccagcagcgcct 32252

                                                                         
Query: 373   gcagagcatcgtgcggcagcgggaggagctgcagcaggtcgagatcgatctgcgcgcaca 432
             ||||||| ||||||  |||||||||||||| |||| | | ||||| || ||||| || ||
Sbjct: 32251 gcagagcgtcgtgcatcagcgggaggagcttcagcggcttgagatggagctgcgagctca 32192

                            
Query: 433   ggccatcgcccaccc 447
             || ||||||||||||
Sbjct: 32191 ggtcatcgcccaccc 32177
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 410     gtcgagatcgatctgcgcgcacaggcc 436
               ||||||||||||||||| |||||||||
Sbjct: 1675063 gtcgagatcgatctgcgagcacaggcc 1675089
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>gb|AE009472.1| Brucella melitensis 16M chromosome I, section 29 of 195 of the
            complete sequence
          Length = 10275

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 410  gtcgagatcgatctgcgcgcacaggcc 436
            ||||||||||||||||| |||||||||
Sbjct: 9329 gtcgagatcgatctgcgagcacaggcc 9303
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 410     gtcgagatcgatctgcgcgcacaggcc 436
               ||||||||||||||||| |||||||||
Sbjct: 1691985 gtcgagatcgatctgcgagcacaggcc 1692011
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 410     gtcgagatcgatctgcgcgcacaggcc 436
               ||||||||||||||||| |||||||||
Sbjct: 1689142 gtcgagatcgatctgcgagcacaggcc 1689168
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>gb|BC070906.1| Rattus norvegicus v-maf musculoaponeurotic fibrosarcoma oncogene
           family, protein K (avian), mRNA (cDNA clone MGC:91461
           IMAGE:7103075), complete cds
          Length = 2670

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 385 gcggcagcgggaggagctgcagcagg 410
           ||||||||||| ||||||||||||||
Sbjct: 432 gcggcagcgggtggagctgcagcagg 457
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>ref|NM_145673.2| Rattus norvegicus v-maf musculoaponeurotic fibrosarcoma oncogene
           family, protein K (avian) (Mafk), mRNA
          Length = 2670

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 385 gcggcagcgggaggagctgcagcagg 410
           ||||||||||| ||||||||||||||
Sbjct: 432 gcggcagcgggtggagctgcagcagg 457
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>gb|AF461686.1| Rattus norvegicus strain NEDH MAFK mRNA, complete cds
          Length = 663

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 385 gcggcagcgggaggagctgcagcagg 410
           ||||||||||| ||||||||||||||
Sbjct: 347 gcggcagcgggtggagctgcagcagg 372
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>gb|AF305872.2| Homo sapiens chromosome 8 clone CTD-2182N23 map 8q24.3 , complete
              sequence
          Length = 134215

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     tccccccatcggcctccagcc 42
              |||||||||||||||||||||
Sbjct: 120748 tccccccatcggcctccagcc 120768
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>gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q24.3 , complete
             sequence
          Length = 129619

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    tccccccatcggcctccagcc 42
             |||||||||||||||||||||
Sbjct: 17626 tccccccatcggcctccagcc 17646
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>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and
             LRK19 (Lrk19) genes, complete cds
          Length = 35872

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 335   agcggtgggctcagcgatgacatcc 359
             |||||||||||| ||||||||||||
Sbjct: 17785 agcggtgggctcggcgatgacatcc 17809
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>emb|Y18319.1|SLAP18319 Homo sapiens SLAP gene, clone SEQ.A1
          Length = 2939

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 22  tccccccatcggcctccagcc 42
           |||||||||||||||||||||
Sbjct: 842 tccccccatcggcctccagcc 822
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     ccatcggcctccagccggcg 46
              ||||||||||||||||||||
Sbjct: 831695 ccatcggcctccagccggcg 831676
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>ref|XM_587665.2| PREDICTED: Bos taurus similar to testis specific, 10 interacting
            protein (LOC510521), mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 388  gcagcgggaggagctgcagcaggtcgag 415
            |||||||||||||| |||||||| ||||
Sbjct: 1179 gcagcgggaggagcagcagcaggccgag 1206
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>gb|AY650399.1| Homo sapiens cell division cycle 34 (CDC34) gene, complete cds
          Length = 14358

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 255 tggcgcagtccgagggcagggcca 278
           |||| |||||||||||||||||||
Sbjct: 563 tggcacagtccgagggcagggcca 586
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 357     tcctgcagcagcgcctgcag 376
               ||||||||||||||||||||
Sbjct: 3873140 tcctgcagcagcgcctgcag 3873159
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     gctcagcgatgacatcctgc 362
               ||||||||||||||||||||
Sbjct: 4788440 gctcagcgatgacatcctgc 4788421
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>ref|XM_843888.1| PREDICTED: Canis familiaris similar to keratin associated protein
           10-7 (LOC607272), mRNA
          Length = 843

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 387 ggcagcgggaggagctgcagcagg 410
           ||||| ||||||||||||||||||
Sbjct: 472 ggcagggggaggagctgcagcagg 449
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>ref|XM_548513.2| PREDICTED: Canis familiaris similar to keratin associated protein
           10-7 (LOC491392), mRNA
          Length = 1155

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 387 ggcagcgggaggagctgcagcagg 410
           ||||| ||||||||||||||||||
Sbjct: 769 ggcagggggaggagctgcagcagg 746
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>ref|XM_844678.1| PREDICTED: Canis familiaris similar to keratin associated protein
           10-7 (LOC607849), mRNA
          Length = 933

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 387 ggcagcgggaggagctgcagcagg 410
           ||||| ||||||||||||||||||
Sbjct: 610 ggcagggggaggagctgcagcagg 587
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>ref|XM_544928.2| PREDICTED: Canis familiaris similar to keratin associated protein
           10-7 (LOC487804), mRNA
          Length = 1020

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 387 ggcagcgggaggagctgcagcagg 410
           ||||| ||||||||||||||||||
Sbjct: 685 ggcagggggaggagctgcagcagg 662



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 387 ggcagcgggaggagctgcagcagg 410
           ||||| ||||||||||||||||||
Sbjct: 517 ggcagggggaggagctgcagcagg 494



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 387 ggcagcgggaggagctgcagcagg 410
           ||||| ||||||||||||||||||
Sbjct: 349 ggcagggggaggagctgcagcagg 326
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>gb|AC130551.4| Mus musculus BAC clone RP24-538J2 from chromosome 9, complete sequence
          Length = 189707

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     ccctagcccctccccccatc 31
              ||||||||||||||||||||
Sbjct: 188108 ccctagcccctccccccatc 188127
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>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12
          Length = 300000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     atcggcctccagccggcgct 48
              ||||||||||||||||||||
Sbjct: 119368 atcggcctccagccggcgct 119349
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>gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, complete sequence
          Length = 188119

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   ccctagcccctccccccatc 31
            ||||||||||||||||||||
Sbjct: 8133 ccctagcccctccccccatc 8152
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     ctgcagcaggtcgagatcga 420
               ||||||||||||||||||||
Sbjct: 3096810 ctgcagcaggtcgagatcga 3096791
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>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     ccatcggcctccagccggcg 46
              ||||||||||||||||||||
Sbjct: 145232 ccatcggcctccagccggcg 145213
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>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7
          Length = 348764

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    agcgcctgcagagcatcgtg 385
              ||||||||||||||||||||
Sbjct: 123666 agcgcctgcagagcatcgtg 123685
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>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14
          Length = 320050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     ccatcggcctccagccggcg 46
              ||||||||||||||||||||
Sbjct: 164327 ccatcggcctccagccggcg 164308
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 394     ggaggagctgcagcaggtcg 413
               ||||||||||||||||||||
Sbjct: 3279607 ggaggagctgcagcaggtcg 3279588
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 419     gatctgcgcgcacaggccatcgcc 442
               ||||||| ||||||||||||||||
Sbjct: 2167170 gatctgcccgcacaggccatcgcc 2167147
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     atggcgccgaggatgccgcg 241
               ||||||||||||||||||||
Sbjct: 2772107 atggcgccgaggatgccgcg 2772126
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      agccccgccgccagatcccg 115
               ||||||||||||||||||||
Sbjct: 1991878 agccccgccgccagatcccg 1991859
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     tcctgcagcagcgcctgcag 376
               ||||||||||||||||||||
Sbjct: 3506280 tcctgcagcagcgcctgcag 3506261
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>gb|AC011531.7|AC011531 Homo sapiens chromosome 19 clone LLNLR-231G5, complete sequence
          Length = 36377

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   tggcgcagtccgagggcagggcca 278
             |||| |||||||||||||||||||
Sbjct: 19784 tggcacagtccgagggcagggcca 19807
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>dbj|AK110437.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-C10, full
           insert sequence
          Length = 2166

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 388 gcagcgggaggagctgcagc 407
           ||||||||||||||||||||
Sbjct: 827 gcagcgggaggagctgcagc 808
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>emb|AL583844.11| Human DNA sequence from clone RP11-365D9 on chromosome 1 Contains part
             of the GNG4 gene for guanine nucleotide binding protein (G
             protein), gamma 4, a solute carrier family 39 (zinc
             transporter), member 14 (SLC39A14) processed pseudogene
             and a CpG island, complete sequence
          Length = 77239

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   ggcagcgggaggagctgcag 406
             ||||||||||||||||||||
Sbjct: 15735 ggcagcgggaggagctgcag 15716
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>gb|U77912.1|MBU77912 Mycobacterium bovis MBE50a gene, partial cds; and MBE50b, MBE50c,
            preprotein translocase SecY subunit (secY), adenylate
            kinase (adk), methionine aminopeptidase (map), RNA
            polymerase ECF sigma factor (sigE50), MBE50d, and MBE50e
            genes, complete cds
          Length = 7163

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   ccatcggcctccagccggcg 46
            ||||||||||||||||||||
Sbjct: 6961 ccatcggcctccagccggcg 6942
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>gb|AF478411.1| Chlamydomonas reinhardtii iron transporter Ftr1 (FTR1) mRNA,
           complete cds
          Length = 2833

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 31  cggcctccagccggcgcttc 50
           ||||||||||||||||||||
Sbjct: 619 cggcctccagccggcgcttc 600
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>emb|AL773582.6| Mouse DNA sequence from clone RP23-174J23 on chromosome 2, complete
             sequence
          Length = 206309

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ctgcagagcatcgtgcggca 390
             ||||||||||||||||||||
Sbjct: 49812 ctgcagagcatcgtgcggca 49831


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,787,309
Number of Sequences: 3902068
Number of extensions: 2787309
Number of successful extensions: 67124
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65924
Number of HSP's gapped (non-prelim): 1199
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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