>ref|XM_469348.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1515

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 203 tccgccggcggcgggggcctcg 224
           ||||||||||||||||||||||
Sbjct: 139 tccgccggcggcgggggcctcg 160

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 203      tccgccggcggcgggggcctcg 224
                ||||||||||||||||||||||
Sbjct: 27484118 tccgccggcggcgggggcctcg 27484139



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     ctcggtgcccgacgcgatgc 126
               ||||||||||||||||||||
Sbjct: 5300486 ctcggtgcccgacgcgatgc 5300467

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 203      tccgccggcggcgggggcctcg 224
                ||||||||||||||||||||||
Sbjct: 27575441 tccgccggcggcgggggcctcg 27575462



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     ctcggtgcccgacgcgatgc 126
               ||||||||||||||||||||
Sbjct: 5299701 ctcggtgcccgacgcgatgc 5299682

>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete
             sequence
          Length = 123406

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 203   tccgccggcggcgggggcctcg 224
             ||||||||||||||||||||||
Sbjct: 66396 tccgccggcggcgggggcctcg 66375

>ref|NM_115391.3| Arabidopsis thaliana calcium ion binding AT3G55330 mRNA, complete
           cds
          Length = 907

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  accttcttctccaatctcca 41
           ||||||||||||||||||||
Sbjct: 97  accttcttctccaatctcca 116

>ref|NM_188390.1| Oryza sativa (japonica cultivar-group), Ozsa8116 predicted mRNA
          Length = 657

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 gcccctccgccggcggcggg 217
           ||||||||||||||||||||
Sbjct: 391 gcccctccgccggcggcggg 372

>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  gcgcccgtccgcggggaacg 144
            ||||||||||||||||||||
Sbjct: 5691 gcgcccgtccgcggggaacg 5710

>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 107  ctcggtgcccgacgcgatgc 126
            ||||||||||||||||||||
Sbjct: 6654 ctcggtgcccgacgcgatgc 6635

>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
              clone OSJNBa0021H20, complete sequence
          Length = 133079

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ctcggtgcccgacgcgatgc 126
              ||||||||||||||||||||
Sbjct: 123888 ctcggtgcccgacgcgatgc 123869

>emb|AL132954.1|ATT26I12 Arabidopsis thaliana DNA chromosome 3, BAC clone T26I12
          Length = 88997

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    accttcttctccaatctcca 41
             ||||||||||||||||||||
Sbjct: 83634 accttcttctccaatctcca 83615

>gb|AC163712.3| Gallus gallus BAC clone CH261-29M9 from chromosome ul, complete sequence
          Length = 236367

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    gccggcggcgggggcctcgc 225
              ||||||||||||||||||||
Sbjct: 222198 gccggcggcgggggcctcgc 222217

>gb|AY097338.1| Arabidopsis thaliana AT3g55330/T26I12_210 mRNA, complete cds
          Length = 693

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 accttcttctccaatctcca 41
          ||||||||||||||||||||
Sbjct: 21 accttcttctccaatctcca 40

>gb|AC165369.3| Gallus gallus BAC clone CH261-58G18 from chromosome ul, complete
             sequence
          Length = 208903

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   gccggcggcgggggcctcgc 225
             ||||||||||||||||||||
Sbjct: 98494 gccggcggcgggggcctcgc 98513

>gb|AY030050.1| Gallus gallus homeo box A13 (HOXA13) mRNA, complete cds
          Length = 921

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 gccggcggcgggggcctcgc 225
           ||||||||||||||||||||
Sbjct: 180 gccggcggcgggggcctcgc 161

>gb|AF419553.1|AF419553 Arabidopsis thaliana AT3g55330/T26I12_210 mRNA, complete cds
          Length = 904

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  accttcttctccaatctcca 41
           ||||||||||||||||||||
Sbjct: 97  accttcttctccaatctcca 116

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     ccggtttcgccgccggggcc 200
               ||||||||||||||||||||
Sbjct: 1040022 ccggtttcgccgccggggcc 1040003

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     gcccctccgccggcggcggg 217
               ||||||||||||||||||||
Sbjct: 6007405 gcccctccgccggcggcggg 6007424

>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ctcggtgcccgacgcgatgc 126
             ||||||||||||||||||||
Sbjct: 21648 ctcggtgcccgacgcgatgc 21629

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 148     ggccgccgggccgccccgtg 167
               ||||||||||||||||||||
Sbjct: 8067274 ggccgccgggccgccccgtg 8067255

>gb|AY087663.1| Arabidopsis thaliana clone 3747 mRNA, complete sequence
          Length = 842

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 accttcttctccaatctcca 41
          ||||||||||||||||||||
Sbjct: 33 accttcttctccaatctcca 52

>gb|AY086129.1| Arabidopsis thaliana clone 21674 mRNA, complete sequence
          Length = 848

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 accttcttctccaatctcca 41
          ||||||||||||||||||||
Sbjct: 47 accttcttctccaatctcca 66

>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0466B10
          Length = 151806

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   gcccctccgccggcggcggg 217
             ||||||||||||||||||||
Sbjct: 75293 gcccctccgccggcggcggg 75312

>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031E09
          Length = 176349

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   gcccctccgccggcggcggg 217
             ||||||||||||||||||||
Sbjct: 31762 gcccctccgccggcggcggg 31781

>gb|AF083098.1|AF083098 Gallus gallus transcription factor HOXA13 (HOXA13) gene, partial
           cds
          Length = 420

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 gccggcggcgggggcctcgc 225
           ||||||||||||||||||||
Sbjct: 207 gccggcggcgggggcctcgc 188

>dbj|AK104322.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A02, full
           insert sequence
          Length = 948

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 gcccctccgccggcggcggg 217
           ||||||||||||||||||||
Sbjct: 464 gcccctccgccggcggcggg 445

>dbj|AK071702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108G02, full
           insert sequence
          Length = 954

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 gcccctccgccggcggcggg 217
           ||||||||||||||||||||
Sbjct: 469 gcccctccgccggcggcggg 450

>dbj|AK068329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136I24, full
           insert sequence
          Length = 1005

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 gcccctccgccggcggcggg 217
           ||||||||||||||||||||
Sbjct: 465 gcccctccgccggcggcggg 446

>ref|NM_204139.1| Gallus gallus homeobox A13 (HOXA13), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 gccggcggcgggggcctcgc 225
           ||||||||||||||||||||
Sbjct: 180 gccggcggcgggggcctcgc 161

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 169    ccggcttcgtccccggtttcgccgccgg 196
              ||||||||||| ||||||||| ||||||
Sbjct: 167899 ccggcttcgtcgccggtttcgtcgccgg 167872


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,254,987
Number of Sequences: 3902068
Number of extensions: 1254987
Number of successful extensions: 27015
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26659
Number of HSP's gapped (non-prelim): 356
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)