>CYSJ_VIBF1 (Q5E841) Sulfite reductase [NADPH] flavoprotein alpha-component (EC|
           1.8.1.2) (SIR-FP)
          Length = 604

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 267 PQASARQSKHLFGGSQASGAAGEINKSVAAIARDPAG 157
           PQ  A  S + +G SQ SGA   IN++ AA++  PAG
Sbjct: 30  PQQLAWVSGYFWGISQTSGATQPINQAAAAVSSQPAG 66

>DICER_ARATH (Q9SP32) Endoribonuclease Dicer homolog (EC 3.1.26.-) (CARPEL|
           FACTORY protein) (SHORT INTEGUMENTS 1 protein)
           (SUSPENSOR1 protein)
          Length = 1909

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -1

Query: 372 VSLPMTEVITPAKALTICWMLYERSYQNAQFCRK*PQASARQSKHLFGGSQASGAAGEIN 193
           V +P   V+   KA T+ W L+E   Q      +  QAS+R+SK  F G++ +GA  E+ 
Sbjct: 455 VPMPSEIVVEYDKAATM-WSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELR 513

Query: 192 K 190
           +
Sbjct: 514 Q 514

>ATOH1_MOUSE (P48985) Atonal protein homolog 1 (Helix-loop-helix protein mATH-1)|
           (MATH1)
          Length = 351

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
 Frame = +2

Query: 125 HRRNERP---PPSAPAGSLAIAATDLLISPAA--------PLAWLPPNRCLLCRAEAWGH 271
           H R+ +P   PP  P     + A DL + PA         P AWL P    LC A A  +
Sbjct: 19  HHRHPQPHHVPPLTPQPPATLQARDLPVYPAELSLLDSTDPRAWLTPTLQGLCTARAAQY 78

Query: 272 FLQN 283
            L +
Sbjct: 79  LLHS 82

>SFRP3_BOVIN (Q95117) Secreted frizzled-related protein 3 precursor (sFRP-3)|
           (Frizzled-related protein 1) (FrzB-1)
          Length = 325

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 158 PAGSLAIAATDLLISPAAPLAWLPPNRCLLCRAEAW 265
           PAG LA+AA  LL  P A  A   P R  LC++  W
Sbjct: 13  PAGLLALAALCLLRVPGARAAACEPVRIPLCKSLPW 48

>MAZ_HUMAN (P56270) Myc-associated zinc finger protein (MAZI) (Purine-binding|
           transcription factor) (Pur-1) (ZF87) (ZIF87)
          Length = 477

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 50  APSAHASTVAAPSXXXXXXXHDFCAHRRNERPPP-----SAPAGSLAIAATDLLISPAAP 214
           A +A A+  AAP         D  A ++   PPP     SAPA   A  A+   I+ AA 
Sbjct: 102 AAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAA 161

Query: 215 LAWLPP 232
            A + P
Sbjct: 162 TAVVAP 167

>CRCB2_MYCTU (P63864) Protein crcB homolog 2|
          Length = 126

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +2

Query: 158 PAGSLAIAATDL-LISPAAPLAWLPPNRCLLCRAEAWGHF--LQNWAFW*LRS*SIQQMV 328
           P G+L +  T   L+   A LA LP +  LL      G +     W     R    +QMV
Sbjct: 42  PYGTLTVNITGAALLGFLAGLA-LPKDAALLAGTGFVGAYTTFSTWMLETQRLGEDRQMV 100

Query: 329 SALAGVMTSVI-GKLTALLGEEYAXL 403
           SALA ++ SV+ G   ALLG+  A +
Sbjct: 101 SALANIVVSVVLGLAAALLGQWIAQI 126

>CRCB2_MYCBO (P63865) Protein crcB homolog 2|
          Length = 126

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +2

Query: 158 PAGSLAIAATDL-LISPAAPLAWLPPNRCLLCRAEAWGHF--LQNWAFW*LRS*SIQQMV 328
           P G+L +  T   L+   A LA LP +  LL      G +     W     R    +QMV
Sbjct: 42  PYGTLTVNITGAALLGFLAGLA-LPKDAALLAGTGFVGAYTTFSTWMLETQRLGEDRQMV 100

Query: 329 SALAGVMTSVI-GKLTALLGEEYAXL 403
           SALA ++ SV+ G   ALLG+  A +
Sbjct: 101 SALANIVVSVVLGLAAALLGQWIAQI 126

>HNF1A_RAT (P15257) Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific|
           transcription factor LF-B1) (LFB1)
          Length = 628

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 11  THSSQFLTVPHLHAPSAHASTVAAPSXXXXXXXHDFCAHRRNERPPPSA 157
           T  ++  + P LH PS+ A+T+  PS       H   AHR +  P  S+
Sbjct: 542 TSDTEASSEPGLHEPSSPATTIHIPSQDPSNIQHLQPAHRLSTSPTVSS 590

>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 245

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +2

Query: 125 HRRNERPPPSAPAGSLAIAATDLLISP-------AAPLAWLPPNRCLLCRAEAWGH 271
           HR   RP P  P G++  A + +  +P       +AP A  PP  C L   + W H
Sbjct: 8   HRGPRRPRPPGPTGAVPTAQSQVTSTPNSEPVVRSAPAAGGPPPSCSLLLRQ-WLH 62

>SEM6D_MOUSE (Q76KF0) Semaphorin-6D precursor|
          Length = 1073

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 110  HDFCAHRRNERPPPSAPAGSLAIAATDLLISPAAPLAWLPP 232
            +D   H  +    P A  G + +A   L++ P  P+A +PP
Sbjct: 880  NDLLKHLNDPNSNPKAILGEIHMAHQTLMLDPVGPMAEVPP 920


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,695,755
Number of Sequences: 219361
Number of extensions: 961833
Number of successful extensions: 3086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)