>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.099
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 108      ggcggcgcggctcgccgcggcg 129
                ||||||||||||||||||||||
Sbjct: 12795355 ggcggcgcggctcgccgcggcg 12795334



 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 108      ggcggcgcggctcgccgcggcgg 130
                ||||||| |||||||||||||||
Sbjct: 29654619 ggcggcggggctcgccgcggcgg 29654641

>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score = 44.1 bits (22), Expect = 0.099
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 108   ggcggcgcggctcgccgcggcg 129
             ||||||||||||||||||||||
Sbjct: 33571 ggcggcgcggctcgccgcggcg 33550

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.099
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 108      ggcggcgcggctcgccgcggcg 129
                ||||||||||||||||||||||
Sbjct: 12792118 ggcggcgcggctcgccgcggcg 12792097



 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 108      ggcggcgcggctcgccgcggcgg 130
                ||||||| |||||||||||||||
Sbjct: 29746041 ggcggcggggctcgccgcggcgg 29746063

>gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa, partial sequence
          Length = 32896

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   cggcgcggctcgccgcggcgg 130
             |||||||||||||||||||||
Sbjct: 13988 cggcgcggctcgccgcggcgg 14008

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 109     gcggcgcggctcgccgcggcg 129
               |||||||||||||||||||||
Sbjct: 2062323 gcggcgcggctcgccgcggcg 2062303



 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 109     gcggcgcggctcgccgcgg 127
               |||||||||||||||||||
Sbjct: 2892443 gcggcgcggctcgccgcgg 2892461

>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 89     cgctgtccttgcttcttctggcggcgcggctc 120
              |||||||||| | || ||||||||||||||||
Sbjct: 312058 cgctgtccttccgtcgtctggcggcgcggctc 312089

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     ggcggcgcggctcgccgcgg 127
               ||||||||||||||||||||
Sbjct: 2861623 ggcggcgcggctcgccgcgg 2861604



 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 108     ggcggcgcggctcgccgcggcgg 130
               |||||||||| ||||||||||||
Sbjct: 2023968 ggcggcgcggttcgccgcggcgg 2023990

>gb|U31284.1|MCU31284 Mesotaenium caldariorum clone mesphy1b phytochrome gene, complete cds
          Length = 10878

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   gagcgagagcgtggtgggcg 36
            ||||||||||||||||||||
Sbjct: 7714 gagcgagagcgtggtgggcg 7733

>gb|U31283.1|MCU31283 Mesotaenium caldariorum clone mesphy1a phytochrome gene, partial cds,
            exons 4 through 10
          Length = 4727

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   gagcgagagcgtggtgggcg 36
            ||||||||||||||||||||
Sbjct: 2994 gagcgagagcgtggtgggcg 3013

>gb|AC116389.12| Mus musculus chromosome 7, clone RP23-21B1, complete sequence
          Length = 236139

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 92    tgtccttgcttcttctggc 110
             |||||||||||||||||||
Sbjct: 57519 tgtccttgcttcttctggc 57537

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 112     gcgcggctcgccgcggcgg 130
               |||||||||||||||||||
Sbjct: 2483677 gcgcggctcgccgcggcgg 2483695

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 111     ggcgcggctcgccgcggcg 129
               |||||||||||||||||||
Sbjct: 2306845 ggcgcggctcgccgcggcg 2306827



 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 108    ggcggcgcggctcgccgcggcgg 130
              |||||||||||||| ||||||||
Sbjct: 561415 ggcggcgcggctcgacgcggcgg 561437

>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete
              sequence
          Length = 163712

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 108    ggcggcgcggctcgccgcggcgg 130
              ||||||| |||||||||||||||
Sbjct: 116758 ggcggcggggctcgccgcggcgg 116736

>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 108   ggcggcgcggctcgccgcggcgg 130
             |||||||| ||||||||||||||
Sbjct: 65510 ggcggcgcagctcgccgcggcgg 65532

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 109     gcggcgcggctcgccgcgg 127
               |||||||||||||||||||
Sbjct: 1883247 gcggcgcggctcgccgcgg 1883229

>emb|Z83217.2|CEC10C6 Caenorhabditis elegans Cosmid C10C6, complete sequence
          Length = 43789

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    cgagaaggccggcagctcg 61
             |||||||||||||||||||
Sbjct: 16574 cgagaaggccggcagctcg 16556

>gb|AC118931.8| Mus musculus chromosome 19, clone RP24-118A21, complete sequence
          Length = 233367

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    tgggcgagcgaacgagaag 49
             |||||||||||||||||||
Sbjct: 70781 tgggcgagcgaacgagaag 70763

>gb|AC130800.23| Medicago truncatula clone mth2-36b7, complete sequence
          Length = 133868

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    cgagagcgtggtgggcgag 38
             |||||||||||||||||||
Sbjct: 95718 cgagagcgtggtgggcgag 95700

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 109     gcggcgcggctcgccgcgg 127
               |||||||||||||||||||
Sbjct: 2020053 gcggcgcggctcgccgcgg 2020071

>emb|AL160011.35| Human DNA sequence from clone RP11-242B12 on chromosome 10 Contains the
             ELOVL3 gene for elongation of very long chain fatty acids
             (FEN1/Elo2, SUR4/Elo3, yeast)-like 3, the PITX3 gene for
             paired-like homeodomain transcription factor 3, the  5'
             end of the GBF1 gene for golgi-specific brefeldin A
             resistance factor 1 and three CpG islands, complete
             sequence
          Length = 47159

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   gcgcggctcgccgcggcgg 130
             |||||||||||||||||||
Sbjct: 26904 gcgcggctcgccgcggcgg 26886

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     cggcgcggctcgccgcggc 128
               |||||||||||||||||||
Sbjct: 2600232 cggcgcggctcgccgcggc 2600214

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 108    ggcggcgcggctcgccgcggcgg 130
              |||||||| ||||||||||||||
Sbjct: 868499 ggcggcgctgctcgccgcggcgg 868521

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 107     tggcggcgcggctcgccgcggcg 129
               |||||||||||||||||| ||||
Sbjct: 7015803 tggcggcgcggctcgccgaggcg 7015825

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 111     ggcgcggctcgccgcggcg 129
               |||||||||||||||||||
Sbjct: 1555301 ggcgcggctcgccgcggcg 1555283



 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 112     gcgcggctcgccgcggcgg 130
               |||||||||||||||||||
Sbjct: 1301012 gcgcggctcgccgcggcgg 1300994

>dbj|AB125811.1| Mus terricolor irbp gene for interphotoreceptor retinoid-binding
           protein, partial cds, isolate:HS1468
          Length = 1152

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  cgtggtgggcgagcgaacg 44
           |||||||||||||||||||
Sbjct: 549 cgtggtgggcgagcgaacg 567

>dbj|AB125810.1| Mus terricolor irbp gene for interphotoreceptor retinoid-binding
           protein, partial cds, isolate:HS2334
          Length = 1152

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  cgtggtgggcgagcgaacg 44
           |||||||||||||||||||
Sbjct: 549 cgtggtgggcgagcgaacg 567

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 59      tcgggatgggctggttcgc 77
               |||||||||||||||||||
Sbjct: 3283037 tcgggatgggctggttcgc 3283019

>gb|AF007101.1|AF007101 Streptomyces hygroscopicus putative pteridine-dependent dioxygenase,
             PKS modules 1,2,3 and 4, and putative regulatory protein
             genes, complete cds and putative hydroxylase gene, partial
             cds
          Length = 32870

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 107   tggcggcgcggctcgccgcggcg 129
             ||||||||| |||||||||||||
Sbjct: 23890 tggcggcgctgctcgccgcggcg 23912


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 814,434
Number of Sequences: 3902068
Number of extensions: 814434
Number of successful extensions: 63076
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60597
Number of HSP's gapped (non-prelim): 2479
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)