ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15c05 |
|---|---|
| Clone Library Name | barley_pub |
>HIS5_BORPE (Q7VSY8) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 225 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +2 Query: 47 PPIVRRLLSPHPAENYASPTARAQPPXXXXXXXRIPRGGW 166 P VRR P A+ A+ A A PP ++P GW Sbjct: 104 PGEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGW 143
>HIS5_BORPA (Q7W2Y1) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 225 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +2 Query: 47 PPIVRRLLSPHPAENYASPTARAQPPXXXXXXXRIPRGGW 166 P VRR P A+ A+ A A PP ++P GW Sbjct: 104 PGEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGW 143
>HIS5_BORBR (Q7WDY1) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 225 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +2 Query: 47 PPIVRRLLSPHPAENYASPTARAQPPXXXXXXXRIPRGGW 166 P VRR P A+ A+ A A PP ++P GW Sbjct: 104 PGEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGW 143
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 8/45 (17%) Frame = +2 Query: 14 HLACPHRMRQPPPIVRRLL--------SPHPAENYASPTARAQPP 124 H P R R P P +R L SP+P+ + +SP + PP Sbjct: 345 HSPSPRRKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPP 389
>US31_HCMVA (P09707) Hypothetical protein HHRF6| Length = 161 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 94 VVFRWMWREQPTHDRWRLAHAVRASQVKGR 5 V +W R + +HDRW L +A R ++GR Sbjct: 52 VAVQWQARVRDSHDRWCLCNAWRDHALRGR 81
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -3 Query: 243 RRPPSDQAAACPPPKREG*ARLGSPHHPPLGIRREELRRDGGCAR 109 +RPP A P P R+ +G+P P + R E + G AR Sbjct: 1121 QRPPPPSGARSPAPARKEFGGVGAPPSPGVARREIEAPKSPGTAR 1165
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -3 Query: 243 RRPPSDQAAACPPPKREG*ARLGSPHHPPLGIRREELRRDGGCAR 109 +RPP A P P R+ +G+P P + R E + G AR Sbjct: 1121 QRPPPPSGARSPAPARKEFGGVGAPPSPGVTRREMEAPKSPGTAR 1165
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 255 RGRIRRPPSDQAAACPPPK-REG*ARLGSPHHPPLGIR 145 RG PP + PPP+ R G ++ G+P PP G R Sbjct: 506 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSR 543
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = +2 Query: 38 RQPPPIVRRLLSPHPAENYASPTARAQPPXXXXXXXRIPRGGWCGEPRRAQP 193 +QPPP R SP P + P+A PP ++P EP + P Sbjct: 577 QQPPPSAARAPSPLPPQQQPLPSATPAPP----PAQQLPPSATTLEPEKNHP 624
>RP54_RHOSH (Q01194) RNA polymerase sigma-54 factor| Length = 434 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +2 Query: 26 PHRMRQPPPIVRRLLSPHPAENYASPTARAQPPXXXXXXXRIPRG--GWCGEPRRAQ 190 P +R+ ++R L SP P E +A+ QPP R+ RG GW E RAQ Sbjct: 201 PEHIRENLALIRSL-SPKPGEAFAADRTPIQPP-----DVRVLRGPEGWEVELTRAQ 251
>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1575 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -3 Query: 243 RRPPSDQAAACPPPKREG*ARLGSPHHPPLGIRREELRRDGGCAR 109 +RPP A P P R+ +G+P P + R E + G R Sbjct: 1124 QRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSPGTTR 1168
>GDNF_RAT (Q07731) Glial cell line-derived neurotrophic factor precursor| Length = 211 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 249 RIRRPPSDQAAACPPPKREG*ARLGSPHHPPLGIRREELRRDGGC 115 R++R P QAAA P +R A SP + RR + ++ GC Sbjct: 74 RLKRSPDKQAAALPRRERNRQAAAASPENSRGKGRRGQRGKNRGC 118
>GDNF_MOUSE (P48540) Glial cell line-derived neurotrophic factor precursor| Length = 211 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 249 RIRRPPSDQAAACPPPKREG*ARLGSPHHPPLGIRREELRRDGGC 115 R++R P QAAA P +R A SP + RR + ++ GC Sbjct: 74 RLKRSPDKQAAALPRRERNRQAAAASPENSRGKGRRGQRGKNRGC 118
>PZRN4_HUMAN (Q6ZMN7) PDZ domain-containing RING finger protein 4 (Ligand of| Numb-protein X 4) (SEMACAP3-like protein) Length = 1036 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = -3 Query: 135 LRRDGGCARAVG--EA*FSAGCGESNRRTIGGGWR 37 LR GGCA +G E GCG + R GGG R Sbjct: 112 LRSRGGCASGLGGGEVPARGGCGPTPRAGRGGGAR 146
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 27.7 bits (60), Expect = 6.9 Identities = 25/78 (32%), Positives = 29/78 (37%) Frame = -3 Query: 237 PPSDQAAACPPPKREG*ARLGSPHHPPLGIRREELRRDGGCARAVGEA*FSAGCGESNRR 58 PP A C PP+ A P PPL G V E G G+ RR Sbjct: 804 PPEQPEAPCLPPESPASALEPEPARPPLSALAPP---HGSPDPPVPELLTGRGSGKRGRR 860 Query: 57 TIGGGWRMRCGQAK*REG 4 GGG R G+A+ G Sbjct: 861 G-GGGLRGINGEARPARG 877
>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1717 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Frame = +2 Query: 44 PPPIVRRLLSPHPAENYASPTARAQ-----PPXXXXXXXRIPRGGWCGEPRRAQPS 196 PP RL P P ++ P A PP +P GG G RRA P+ Sbjct: 264 PPEAGPRLAPPEPRDSEVPPARSAPGAFGGPPRAPPADLPLPVGGPGGWSRRASPA 319
>B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = +2 Query: 8 SLHLACPHRMRQPPPI-VRRLLSPHPAENYASPTARAQPP 124 S L PH++R+PPP R E ++P + PP Sbjct: 86 SARLPPPHKLRRPPPTSARHTRRKRKKEKTSAPPSEGTPP 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.131 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,328,348 Number of Sequences: 219361 Number of extensions: 725063 Number of successful extensions: 2758 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2502 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2745 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
