ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15c02 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 89.0 bits (219), Expect = 4e-18 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 1/99 (1%) Frame = +3 Query: 129 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKAEAMKRAVMLLLNGETLPTLFITV 305 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 306 VRYVLPSEDHTIQKLLLLYLEIVDKRDAAGRVLPEMILI 422 +R+VLP +DHTI+KLLL++ EIV K GR+L EMIL+ Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILV 101
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 89.0 bits (219), Expect = 4e-18 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 1/99 (1%) Frame = +3 Query: 129 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKAEAMKRAVMLLLNGETLPTLFITV 305 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 306 VRYVLPSEDHTIQKLLLLYLEIVDKRDAAGRVLPEMILI 422 +R+VLP +DHTI+KLLL++ EIV K GR+L EMIL+ Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILV 101
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 89.0 bits (219), Expect = 4e-18 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 1/99 (1%) Frame = +3 Query: 129 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKAEAMKRAVMLLLNGETLPTLFITV 305 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 306 VRYVLPSEDHTIQKLLLLYLEIVDKRDAAGRVLPEMILI 422 +R+VLP +DHTI+KLLL++ EIV K GR+L EMIL+ Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILV 101
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 87.4 bits (215), Expect = 1e-17 Identities = 42/94 (44%), Positives = 61/94 (64%) Frame = +3 Query: 141 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKAEAMKRAVMLLLNGETLPTLFITVVRYVL 320 PC +++ ++K DLE D K E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 321 PSEDHTIQKLLLLYLEIVDKRDAAGRVLPEMILI 422 P ++HTI+KLLL++ EIV K A G++L EMIL+ Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILV 99
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 62.0 bits (149), Expect = 5e-10 Identities = 32/92 (34%), Positives = 53/92 (57%) Frame = +3 Query: 144 CTLLVHFDKGSAAMANEIKADLEGSDVAAKAEAMKRAVMLLLNGETLPTLFITVVRYVLP 323 C LV D A + +K LE + K AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 324 SEDHTIQKLLLLYLEIVDKRDAAGRVLPEMIL 419 S + ++KLL Y E+ K + G + EMIL Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMIL 94
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 54.3 bits (129), Expect = 1e-07 Identities = 29/75 (38%), Positives = 47/75 (62%) Frame = +3 Query: 198 KADLEGSDVAAKAEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIVD 377 KA +GSD K + MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EIV Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 378 KRDAAGRVLPEMILI 422 K G++ EMIL+ Sbjct: 89 KLAEDGKLRHEMILV 103
>PUR7_CHLTE (Q8KDT4) Phosphoribosylaminoimidazole-succinocarboxamide synthase| (EC 6.3.2.6) (SAICAR synthetase) Length = 235 Score = 32.7 bits (73), Expect = 0.36 Identities = 26/90 (28%), Positives = 41/90 (45%) Frame = +3 Query: 135 DKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKAEAMKRAVMLLLNGETLPTLFITVVRY 314 D P ++ F + A N+ K + V A A + ML NG +PT F+ Sbjct: 19 DNPDLIIQEFKDDATAFNNKKKGSIADKGVTNNAIASRLFTMLGENG--IPTHFVGK--- 73 Query: 315 VLPSEDHTIQKLLLLYLEIVDKRDAAGRVL 404 L D +KL +L +E+V + AAG ++ Sbjct: 74 -LNDRDMLCKKLDILLIEVVTRNIAAGSLV 102
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 31.6 bits (70), Expect = 0.79 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Frame = +3 Query: 165 DKG---SAAMANEIKADLEGSDVAAKAEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 335 DKG + + + + LE +D AA A+ +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 336 TIQKLLL--LYLEIVDKRDAAGR 398 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>MODC_PSEPK (Q88G95) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)| Length = 363 Score = 31.6 bits (70), Expect = 0.79 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Frame = +3 Query: 54 HLRRRSNHRYPTRRRPPARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDV--A 227 HL R N + RR PA R ++D+ C LL G + + A L G + Sbjct: 93 HLSVRGNLTFGWRRVAPAE---RKVSLDQACQLL-----GIGHLLDRRPATLSGGEAQRV 144 Query: 228 AKAEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDAAGRVLP 407 A A+ + LLL E L L R +LP + +L + + + +D R+ Sbjct: 145 GIARALLSSPRLLLMDEPLAALDSPRKREILPFLERLHDELDIPLIYVSHAQDEVARLAD 204 Query: 408 EMILI 422 ++L+ Sbjct: 205 HLVLL 209
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +1 Query: 10 PVNHSPPLPAPRSRSTS------AADPTTD 81 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +1 Query: 10 PVNHSPPLPAPRSRSTS------AADPTTD 81 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/77 (27%), Positives = 39/77 (50%) Frame = +3 Query: 102 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKAEAMKRAVMLLLNGET 281 P +H +SG + P + FD S A + + L ++V+ EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 282 LPTLFITVVRYVLPSED 332 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 3.0 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -3 Query: 197 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 24 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = +3 Query: 261 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDAAGRVLPEMILI 422 L L+ T L + + Y PSED ++L L LEIVD AA M+++ Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 6.7 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +3 Query: 132 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKAEAMKRAVMLLLNGE--TLPTLF-IT 302 +D+ C L V K A+ A + + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIK-----------AVQCQEDECALMLLQHGTDPNLPDMYGNT 167 Query: 303 VVRYVLPSEDHTIQKLLLLYLEIVDKRDAAG 395 + Y + +ED + K LLLY ++ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 89 CGVSVVGSAAEVDRDLGAGRGGEWL 15 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>FREM2_HUMAN (Q5SZK8) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) Length = 3169 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 261 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDAAGRVLPEMILI 422 L L+ T L + + Y PSED ++L L LE+VD AA M+++ Sbjct: 378 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEVVDLEGAASDPFAFMVVV 431
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 18 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 113 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408
>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 8.8 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -1 Query: 307 TTVMKSVGRVSPLRRSMTARFMASAL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 143 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 142 GLSMAPDLP 116 GL PD P Sbjct: 314 GLHSNPDSP 322
>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 8.8 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -1 Query: 307 TTVMKSVGRVSPLRRSMTARFMASAL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 143 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 142 GLSMAPDLP 116 GL PD P Sbjct: 314 GLHSNPDSP 322
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +1 Query: 19 HSPPLPAPRSRSTSAADPTTDTPHAVALR 105 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -3 Query: 131 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 24 G GSA R A G + GS AE GA RGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGG 158
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 232 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 95 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267
>ILVC_NEIMB (Q9JYI2) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 337 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +3 Query: 198 KADLEGSDVAAKAEAMKRA--VMLLLNGETLPTLF 296 KA+ G V AEA K A VMLLL ET+P ++ Sbjct: 54 KAEAAGHVVKTVAEATKEADVVMLLLPDETMPAVY 88
>ILVC_NEIMA (Q9JTI3) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 337 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +3 Query: 198 KADLEGSDVAAKAEAMKRA--VMLLLNGETLPTLF 296 KA+ G V AEA K A VMLLL ET+P ++ Sbjct: 54 KAEAAGHVVKTVAEATKEADVVMLLLPDETMPAVY 88
>ILVC_NEIG1 (Q5F7E5) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 337 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +3 Query: 198 KADLEGSDVAAKAEAMKRA--VMLLLNGETLPTLF 296 KA+ G V AEA K A VMLLL ET+P ++ Sbjct: 54 KAEAAGHVVKTVAEATKEADVVMLLLPDETMPAVY 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,125,570 Number of Sequences: 219361 Number of extensions: 777892 Number of successful extensions: 3667 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3652 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
