>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score =  125 bits (315), Expect = 4e-29
 Identities = 61/72 (84%), Positives = 62/72 (86%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           LY ELWHACAGPLVTVPR  D VFYFPQGHIEQVEAS NQ A  QM LYDLP KLLCRVI
Sbjct: 58  LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVI 117

Query: 409 NVELKAEADTDE 444
           NV+LKAEADTDE
Sbjct: 118 NVDLKAEADTDE 129

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score =  102 bits (254), Expect = 4e-22
 Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
 Frame = +1

Query: 214 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPPK 390
           S  D LY ELW ACAGPLV VPR G+ VFYFPQGH+EQ+ AS NQ V   ++ +++LPPK
Sbjct: 13  SNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPK 72

Query: 391 LLCRVINVELKAEADTDE 444
           +LCRV++V LKAE +TDE
Sbjct: 73  ILCRVLSVTLKAEHETDE 90

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score =  102 bits (253), Expect = 5e-22
 Identities = 45/74 (60%), Positives = 60/74 (81%)
 Frame = +1

Query: 223 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCR 402
           D L  ELWHACAGPLVT+PR G+ V+YFP+GH+EQ+EASM+Q    QM  ++LP K+LC+
Sbjct: 17  DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCK 76

Query: 403 VINVELKAEADTDE 444
           VIN++ +AE +TDE
Sbjct: 77  VINIQRRAEPETDE 90

>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score =  100 bits (248), Expect = 2e-21
 Identities = 48/76 (63%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
 Frame = +1

Query: 220 GDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMR-LYDLPPKLL 396
           G+ LYDELW  CAGPLV VP+  + V+YFPQGH+EQ+EAS  QV  N M+ L+ LPPK+L
Sbjct: 6   GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKIL 65

Query: 397 CRVINVELKAEADTDE 444
           C V+NV L+AE DTDE
Sbjct: 66  CNVMNVSLQAEKDTDE 81

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 46/75 (61%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
 Frame = +1

Query: 223 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQ-VAGNQMRLYDLPPKLLC 399
           D LY ELW  CAGPLV VPR  + VFYFPQGH+EQ+ AS NQ +   ++ ++DLPPK+LC
Sbjct: 20  DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILC 79

Query: 400 RVINVELKAEADTDE 444
           RV++V LKAE +TDE
Sbjct: 80  RVLDVTLKAEHETDE 94

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 37/72 (51%), Positives = 55/72 (76%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y ELWHACAGPL  +P+ G++V YFPQGH+EQ +A ++  +  ++  +DL P+++CRV+
Sbjct: 62  IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVV 120

Query: 409 NVELKAEADTDE 444
           NV+L A  DTDE
Sbjct: 121 NVQLLANKDTDE 132

>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 36/72 (50%), Positives = 50/72 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VEAS  +       + D P KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVI 83

Query: 409 NVELKAEADTDE 444
            ++LK E ++DE
Sbjct: 84  AIQLKVENNSDE 95

>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 37/72 (51%), Positives = 49/72 (68%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VEAS  +         DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVI 83

Query: 409 NVELKAEADTDE 444
            + LK E ++DE
Sbjct: 84  AIHLKVENNSDE 95

>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 36/72 (50%), Positives = 49/72 (68%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE VE S  +       + DLP KL CRVI
Sbjct: 24  VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDE 444
            + LK E ++DE
Sbjct: 84  AIHLKVENNSDE 95

>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 35/72 (48%), Positives = 51/72 (70%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ ++YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDE 444
            ++LK E ++DE
Sbjct: 84  AIQLKVENNSDE 95

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 39/73 (53%), Positives = 50/73 (68%)
 Frame = +1

Query: 226 PLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRV 405
           P+  +LWHACAGPLV++P VG LV YFPQGH EQV ASM +         +LP KL+C +
Sbjct: 19  PINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLL 78

Query: 406 INVELKAEADTDE 444
            +V L A+ +TDE
Sbjct: 79  HSVTLHADTETDE 91

>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 36/72 (50%), Positives = 50/72 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE VEAS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDE 444
            + LK E ++DE
Sbjct: 84  AIHLKVENNSDE 95

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPPKLLCRVINV 414
           ELWHACAGPLV +P+VG LV+YF QGH EQV  S  + A  Q+  Y +LP +L+C+V NV
Sbjct: 54  ELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNV 113

Query: 415 ELKAEADTDE 444
            L A+ D+DE
Sbjct: 114 TLHADKDSDE 123

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMN-QVAGNQMRLYDLPPKLLCRV 405
           L  ELWHACAGPLV++P  G  V YFPQGH EQV A+ N +V G+      LPP+L+C++
Sbjct: 19  LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQL 78

Query: 406 INVELKAEADTDE 444
            NV + A+ +TDE
Sbjct: 79  HNVTMHADVETDE 91

>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 35/72 (48%), Positives = 50/72 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDE 444
            + LK E ++DE
Sbjct: 84  AIHLKVENNSDE 95

>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 35/72 (48%), Positives = 50/72 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE V+AS  +       + DLP KL CRVI
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVI 83

Query: 409 NVELKAEADTDE 444
            + LK E ++DE
Sbjct: 84  AIHLKVENNSDE 95

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 38/69 (55%), Positives = 47/69 (68%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           ELWHACAGPL+++P  G LV YFPQGH EQV ASM +         +LP KL+C + NV 
Sbjct: 24  ELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVT 83

Query: 418 LKAEADTDE 444
           L A+ +TDE
Sbjct: 84  LNADPETDE 92

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 38/77 (49%), Positives = 50/77 (64%)
 Frame = +1

Query: 214 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKL 393
           SAG  +  ELWHACAGPL+++P+ G LV YFPQGH+E       Q       +Y LPP +
Sbjct: 46  SAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLE-------QAPDFSAAIYGLPPHV 98

Query: 394 LCRVINVELKAEADTDE 444
            CR+++V+L AE  TDE
Sbjct: 99  FCRILDVKLHAETTTDE 115

>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 33/72 (45%), Positives = 50/72 (69%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVI 408
           +Y++LW+ CAGPL  +P+ G+ V+YFPQGHIE +E S      +   ++DLP KL CRV+
Sbjct: 24  MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 83

Query: 409 NVELKAEADTDE 444
            ++ K + +TDE
Sbjct: 84  AIDRKVDKNTDE 95

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 39/73 (53%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = +1

Query: 229 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLY-DLPPKLLCRV 405
           L  ELWHACAGPLV++P VG  V YFPQGH EQV AS N+     +  Y  L P+L+C++
Sbjct: 20  LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 79

Query: 406 INVELKAEADTDE 444
            NV + A+ +TDE
Sbjct: 80  HNVTMHADVETDE 92

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 31/69 (44%), Positives = 43/69 (62%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           +LWHACAG +V +P +   VFYF QGH E   A  +  A        +PP +LCRV++V+
Sbjct: 10  QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAPR------VPPLILCRVVSVK 63

Query: 418 LKAEADTDE 444
             A+A+TDE
Sbjct: 64  FLADAETDE 72

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 30/69 (43%), Positives = 44/69 (63%)
 Frame = +1

Query: 238 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDLPPKLLCRVINVE 417
           +LWHACAG +V +P +   VFYFPQGH E     ++   GN      +PP +LCRV+ ++
Sbjct: 19  QLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVD--FGN----LPIPPMVLCRVLAIK 72

Query: 418 LKAEADTDE 444
             A+A++DE
Sbjct: 73  YMADAESDE 81

>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +1

Query: 214 SAGDPLYDE----LWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDL 381
           +AGD  + E    +W ACAG  V +P +   V+YFPQGH+E     ++ +  +       
Sbjct: 7   TAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSS------- 59

Query: 382 PPKLLCRVINVELKAEADTDE 444
              + C + +++L A+  TDE
Sbjct: 60  TSPVPCIITSIQLLADPVTDE 80

>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 280 RVGDLVFYFPQGHIEQVEASMNQVAGNQMRLYDL--PPKLLCRVINVELKAEADTD 441
           R G   FY PQ  ++Q E    Q+AG    L+DL   P +L R+ N++    AD D
Sbjct: 34  RAGICYFYPPQTLLDQQELLCGQLAGVVRCLWDLSGTPPMLIRMRNLKFAIRADGD 89

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 274  VPRVGDLVFYFPQGHIEQVEA 336
            VP++GD V YFPQGH   +EA
Sbjct: 959  VPQMGDEVIYFPQGHEAYIEA 979

>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
            [Includes: ATP-dependent asparagine adenylase (AsnA)
            (Asparagine activase); ATP-dependent glutamine adenylase
            (GlnA) (Glutamine activase); ATP-dependent tyrosine
            adenylase (TyrA) (Ty
          Length = 6486

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 271  TVPRVGDLVFYFPQGHIEQVEASMNQV--AGNQMRLYDLPPKLL 396
            T+ R GD+V Y P GHIE +    +QV   G+++ L ++   LL
Sbjct: 1871 TMYRTGDMVRYLPDGHIEYLGRIDHQVKIRGHRIELGEIEATLL 1914

>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2320

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 274  VPRVGDLVFYFPQGHIEQVEA 336
            VP++GD V YF QGH   +EA
Sbjct: 958  VPQMGDEVIYFRQGHEAYIEA 978

>CH601_COREF (Q8CY27) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1)|
          Length = 537

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 438 GVRLRLELDVDDPAEQLGRQIVEA 367
           GV +  ++DV+DP E LG Q+V++
Sbjct: 52  GVTIARDIDVEDPFENLGAQLVKS 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,762,109
Number of Sequences: 219361
Number of extensions: 290755
Number of successful extensions: 1126
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)