ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467613.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2849 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 305 gagggagtcgtggggcgcggtgctgctgctggcgtaccagagcctcggggtggtgtacgg 364 ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 293 gagggagtcatggggagcgtcgctgctgctcgcgtaccagagcctcggggtggtgtacgg 352 Query: 365 cgacgtgg 372 |||||||| Sbjct: 353 cgacgtgg 360
>ref|XM_506953.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0072H09.37 mRNA Length = 2892 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 305 gagggagtcgtggggcgcggtgctgctgctggcgtaccagagcctcggggtggtgtacgg 364 ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 297 gagggagtcatggggagcgtcgctgctgctcgcgtaccagagcctcggggtggtgtacgg 356 Query: 365 cgacgtgg 372 |||||||| Sbjct: 357 cgacgtgg 364
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 305 gagggagtcgtggggcgcggtgctgctgctggcgtaccagagcctcggggtggtgtacgg 364 ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 30437708 gagggagtcatggggagcgtcgctgctgctcgcgtaccagagcctcggggtggtgtacgg 30437767 Query: 365 cgacgtgg 372 |||||||| Sbjct: 30437768 cgacgtgg 30437775 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgacgt 370 ||||| |||||||| ||||||| |||| ||||||||||||||||| Sbjct: 18867839 gctgcagctggcgttccagagcatcggcgtggtgtacggcgacgt 18867795 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Minus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgacgt 370 ||||| |||||||| ||||||| |||| ||||||||||| ||||| Sbjct: 18897251 gctgcagctggcgttccagagcatcggcgtggtgtacggtgacgt 18897207
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 305 gagggagtcgtggggcgcggtgctgctgctggcgtaccagagcctcggggtggtgtacgg 364 ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 118568 gagggagtcatggggagcgtcgctgctgctcgcgtaccagagcctcggggtggtgtacgg 118627 Query: 365 cgacgtgg 372 |||||||| Sbjct: 118628 cgacgtgg 118635
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 305 gagggagtcgtggggcgcggtgctgctgctggcgtaccagagcctcggggtggtgtacgg 364 ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 43756 gagggagtcatggggagcgtcgctgctgctcgcgtaccagagcctcggggtggtgtacgg 43815 Query: 365 cgacgtgg 372 |||||||| Sbjct: 43816 cgacgtgg 43823
>dbj|AK111629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115O13, full insert sequence Length = 2892 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 305 gagggagtcgtggggcgcggtgctgctgctggcgtaccagagcctcggggtggtgtacgg 364 ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 297 gagggagtcatggggagcgtcgctgctgctcgcgtaccagagcctcggggtggtgtacgg 356 Query: 365 cgacgtgg 372 |||||||| Sbjct: 357 cgacgtgg 364
>dbj|AK098897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A24, full insert sequence Length = 2848 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 305 gagggagtcgtggggcgcggtgctgctgctggcgtaccagagcctcggggtggtgtacgg 364 ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 292 gagggagtcatggggagcgtcgctgctgctcgcgtaccagagcctcggggtggtgtacgg 351 Query: 365 cgacgtgg 372 |||||||| Sbjct: 352 cgacgtgg 359
>ref|XM_479530.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2676 Score = 85.7 bits (43), Expect = 9e-14 Identities = 43/43 (100%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 296
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 85.7 bits (43), Expect = 9e-14 Identities = 43/43 (100%) Strand = Plus / Minus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28691863 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 28691821
>emb|AJ427978.1|OSA427978 Oryza sativa HAK9 gene for putative potasium transporter, exons 1-9 Length = 4425 Score = 85.7 bits (43), Expect = 9e-14 Identities = 43/43 (100%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 539
>dbj|AK070738.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062E24, full insert sequence Length = 2676 Score = 85.7 bits (43), Expect = 9e-14 Identities = 43/43 (100%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 296
>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1409_C08 Length = 90673 Score = 85.7 bits (43), Expect = 9e-14 Identities = 43/43 (100%) Strand = Plus / Minus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67033 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 66991
>dbj|AB254449.1| Phragmites australis PhaHAK2-e mRNA for potassium transporter, complete cds, strain: Enchi Length = 2429 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 76 gctgctgctggcgtaccagagcctgggggtggtgtacggcgac 118
>dbj|AB254448.1| Phragmites australis PhaHAK2-n mRNA for potassium transporter, complete cds, strain: Nanpi Length = 2430 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 76 gctgctgctggcgtaccagagcctgggggtggtgtacggcgac 118
>dbj|AB254447.1| Phragmites australis PhaHAK2-u mRNA for potassium transporter, complete cds, strain: Utsunomiya Length = 2493 Score = 75.8 bits (38), Expect = 9e-11 Identities = 41/42 (97%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcga 367 |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 76 gctgctgctggcgtaccagagcctgggggtggtgtacggcga 117
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 9e-11 Identities = 41/42 (97%) Strand = Plus / Minus Query: 331 tgctggcgtaccagagcctcggggtggtgtacggcgacgtgg 372 ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 9048427 tgctggcgtaccagagcctcggggtggtgtacggcgaggtgg 9048386 Score = 71.9 bits (36), Expect = 1e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 333 ctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||||||||||||||| Sbjct: 24858741 ctggcgtaccagagcctcggggtggtgtacggcgac 24858706 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aggaggagcaaagctggttg 103 |||||||||||||||||||| Sbjct: 1434494 aggaggagcaaagctggttg 1434475
>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0084K06 Length = 177895 Score = 75.8 bits (38), Expect = 9e-11 Identities = 41/42 (97%) Strand = Plus / Minus Query: 331 tgctggcgtaccagagcctcggggtggtgtacggcgacgtgg 372 ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 95745 tgctggcgtaccagagcctcggggtggtgtacggcgaggtgg 95704
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 71.9 bits (36), Expect = 1e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 333 ctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||||||||||||||| Sbjct: 69824 ctggcgtaccagagcctcggggtggtgtacggcgac 69789
>emb|AJ427979.1|OSA427979 Oryza sativa HAK10 gene for putative potasium transporter, exons 1-9 Length = 5051 Score = 71.9 bits (36), Expect = 1e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 333 ctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||||||||||||||| Sbjct: 501 ctggcgtaccagagcctcggggtggtgtacggcgac 536
>emb|AJ427972.1|OSA427972 Oryza sativa mRNA for putative potasium transporter (HAK10 gene) Length = 2532 Score = 71.9 bits (36), Expect = 1e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 333 ctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||||||||||||||| Sbjct: 106 ctggcgtaccagagcctcggggtggtgtacggcgac 141
>ref|NM_193825.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2421 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 324 gtgctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 103 gtgctgctgctggcgtaccagagctgcggcgtggtgtacggcgac 147
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0560B06 Length = 161720 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 324 gtgctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 153296 gtgctgctgctggcgtaccagagctgcggcgtggtgtacggcgac 153252
>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete Sequence, complete sequence Length = 105198 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 324 gtgctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 90908 gtgctgctgctggcgtaccagagctgcggcgtggtgtacggcgac 90864
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 324 gtgctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 15137244 gtgctgctgctggcgtaccagagctgcggcgtggtgtacggcgac 15137200 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 gtcgtggggcgcggtgctgctgctg 335 |||||||||| |||||||||||||| Sbjct: 35706915 gtcgtggggcccggtgctgctgctg 35706891
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 324 gtgctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 109210 gtgctgctgctggcgtaccagagctgcggcgtggtgtacggcgac 109166
>emb|AJ427974.1|OSA427974 Oryza sativa HAK3 gene for putative potasium transporter, exons 1-6 Length = 3777 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 324 gtgctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 531 gtgctgctgctggcgtaccagagctgcggcgtggtgtacggcgac 575
>dbj|AK109760.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G08, full insert sequence Length = 1898 Score = 65.9 bits (33), Expect = 9e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 324 gtgctgctgctggcgtaccagagcctcggggtggtgtacggcgac 368 |||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 213 gtgctgctgctggcgtaccagagctgcggcgtggtgtacggcgac 257
>ref|XM_465982.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2581 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgacgt 370 ||||| |||||||| ||||||| |||| ||||||||||||||||| Sbjct: 342 gctgcagctggcgttccagagcatcggcgtggtgtacggcgacgt 386
>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461D06 Length = 112895 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgacgt 370 ||||| |||||||| ||||||| |||| ||||||||||||||||| Sbjct: 31372 gctgcagctggcgttccagagcatcggcgtggtgtacggcgacgt 31328 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Minus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgacgt 370 ||||| |||||||| ||||||| |||| ||||||||||| ||||| Sbjct: 60784 gctgcagctggcgttccagagcatcggcgtggtgtacggtgacgt 60740
>dbj|AK106353.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A02, full insert sequence Length = 2581 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgacgt 370 ||||| |||||||| ||||||| |||| ||||||||||||||||| Sbjct: 342 gctgcagctggcgttccagagcatcggcgtggtgtacggcgacgt 386
>ref|XM_469863.1| Oryza sativa (japonica cultivar-group), mRNA Length = 522 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 338 gtaccagagcctcggggtggtgtacggc 365 |||||||||||||||||||||||||||| Sbjct: 321 gtaccagagcctcggggtggtgtacggc 348
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 338 gtaccagagcctcggggtggtgtacggc 365 |||||||||||||||||||||||||||| Sbjct: 31198271 gtaccagagcctcggggtggtgtacggc 31198298 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgcgcacggcgcgggggcgc 294 |||||||||||||||||||| Sbjct: 2670786 cgcgcacggcgcgggggcgc 2670805
>gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence Length = 146022 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 338 gtaccagagcctcggggtggtgtacggc 365 |||||||||||||||||||||||||||| Sbjct: 5512 gtaccagagcctcggggtggtgtacggc 5539
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 338 gtaccagagcctcggggtggtgtacggc 365 |||||||||||||||||||||||||||| Sbjct: 118912 gtaccagagcctcggggtggtgtacggc 118939
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 8e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 338 gtaccagagcctcggggtggtgtacggc 365 |||||||||||||||||||||||||||| Sbjct: 31288794 gtaccagagcctcggggtggtgtacggc 31288821 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgcgcacggcgcgggggcgc 294 |||||||||||||||||||| Sbjct: 2670896 cgcgcacggcgcgggggcgc 2670915
>ref|XM_465985.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2795 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgacgt 370 ||||| |||||||| ||||||| |||| ||||||||||| ||||| Sbjct: 450 gctgcagctggcgttccagagcatcggcgtggtgtacggtgacgt 494
>dbj|AK119325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-A11, full insert sequence Length = 2795 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 326 gctgctgctggcgtaccagagcctcggggtggtgtacggcgacgt 370 ||||| |||||||| ||||||| |||| ||||||||||| ||||| Sbjct: 450 gctgcagctggcgttccagagcatcggcgtggtgtacggtgacgt 494
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 gtggggcgcggtgctgctgct 334 ||||||||||||||||||||| Sbjct: 3452747 gtggggcgcggtgctgctgct 3452767
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 gtggggcgcggtgctgctgct 334 ||||||||||||||||||||| Sbjct: 490483 gtggggcgcggtgctgctgct 490503
>ref|XM_850145.1| PREDICTED: Canis familiaris hypothetical protein LOC612412 (LOC612412), mRNA Length = 990 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 286 cgggggcgccgcggaagcgga 306 ||||||||||||||||||||| Sbjct: 778 cgggggcgccgcggaagcgga 758
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 gtggggcgcggtgctgctgct 334 ||||||||||||||||||||| Sbjct: 300400 gtggggcgcggtgctgctgct 300420
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460C04 Length = 189043 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 gtcgtggggcgcggtgctgctgctg 335 |||||||||| |||||||||||||| Sbjct: 110252 gtcgtggggcccggtgctgctgctg 110228
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 ggcgcggtgctgctgctggcg 338 ||||||||||||||||||||| Sbjct: 2226760 ggcgcggtgctgctgctggcg 2226740
>emb|AL358788.17| Human DNA sequence from clone RP11-466J21 on chromosome 1 Contains the 5' UTR of a novel gene (KIAA0478), complete sequence Length = 76982 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 agagagcaaaagaaaagcggccacc 49 ||||||||||||||||| ||||||| Sbjct: 56178 agagagcaaaagaaaagtggccacc 56154
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcgcggtgctgctgctggcg 338 |||||||||||||||||||| Sbjct: 2043459 gcgcggtgctgctgctggcg 2043478
>gb|AC126780.18| Medicago truncatula clone mth2-10n4, complete sequence Length = 139213 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ttggagagggagagtgtggg 120 |||||||||||||||||||| Sbjct: 4312 ttggagagggagagtgtggg 4331
>gb|AY327040.1| Oryza sativa (japonica cultivar-group) transcription factor CBF1 mRNA, complete cds Length = 772 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aggaggagcaaagctggttg 103 |||||||||||||||||||| Sbjct: 724 aggaggagcaaagctggttg 705
>ref|XM_791733.1| PREDICTED: Strongylocentrotus purpuratus similar to ankyrin repeat and FYVE domain containing 1 isoform 1 (LOC592196), mRNA Length = 4983 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 cggtgctgctgctggcgtaccaga 345 |||||||||||||||| ||||||| Sbjct: 1916 cggtgctgctgctggcctaccaga 1939
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 tctgcgcggcatggatctggagct 274 |||||||||||| ||||||||||| Sbjct: 125837 tctgcgcggcatcgatctggagct 125860
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 tctgcgcggcatggatctggagct 274 |||||||||||| ||||||||||| Sbjct: 41669 tctgcgcggcatcgatctggagct 41692
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 tctgcgcggcatggatctggagct 274 |||||||||||| ||||||||||| Sbjct: 273826 tctgcgcggcatcgatctggagct 273803
>gb|AC010117.6| Drosophila melanogaster 3L BAC RP98-21J2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178965 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 agtcgtccgtccgtccgtcttcttcttg 192 |||||||||||||||| ||| ||||||| Sbjct: 95634 agtcgtccgtccgtccatctgcttcttg 95661
>gb|AC159538.20| Medicago truncatula clone mth2-48f16, complete sequence Length = 123581 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ttggagagggagagtgtggg 120 |||||||||||||||||||| Sbjct: 25419 ttggagagggagagtgtggg 25400
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 gggcgcggtgctgctgctgg 336 |||||||||||||||||||| Sbjct: 757686 gggcgcggtgctgctgctgg 757705
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 206 cgcgggcgctgccatgggcgccgcggcg 233 ||||||||| ||| |||||||||||||| Sbjct: 3812979 cgcgggcgccgccgtgggcgccgcggcg 3812952 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 206 cgcgggcgctgccatgggcgccgcggcg 233 ||||||||| ||| |||||||||||||| Sbjct: 2251544 cgcgggcgccgccgtgggcgccgcggcg 2251571
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 acggcgcgggggcgccgcgg 299 |||||||||||||||||||| Sbjct: 470189 acggcgcgggggcgccgcgg 470170
>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050N02, complete sequence Length = 133373 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgcgcacggcgcgggggcgc 294 |||||||||||||||||||| Sbjct: 15705 cgcgcacggcgcgggggcgc 15724
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aggaggagcaaagctggttg 103 |||||||||||||||||||| Sbjct: 41780 aggaggagcaaagctggttg 41761
>dbj|AB178640.1| Bombyx mori aqp mRNA for aquaporin, complete cds Length = 2246 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 236 ttgaggcgcgggcggtctgcgcgg 259 |||||||||| ||||||||||||| Sbjct: 41 ttgaggcgcgtgcggtctgcgcgg 18
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aggaggagcaaagctggttg 103 |||||||||||||||||||| Sbjct: 143033 aggaggagcaaagctggttg 143014
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cggggtggtgtacggcgacg 369 |||||||||||||||||||| Sbjct: 123807 cggggtggtgtacggcgacg 123788
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 cgtccgtcttcttcttgcgg 195 |||||||||||||||||||| Sbjct: 953774 cgtccgtcttcttcttgcgg 953755
>gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72 of 83 of the complete sequence Length = 301136 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 agtcgtccgtccgtccgtcttcttcttg 192 |||||||||||||||| ||| ||||||| Sbjct: 273568 agtcgtccgtccgtccatctgcttcttg 273541
>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence Length = 136080 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cgggcgctgccatgggcgccgcgg 231 ||||| |||||||||||||||||| Sbjct: 32889 cgggcactgccatgggcgccgcgg 32912
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gcgcggtgctgctgctggcg 338 |||||||||||||||||||| Sbjct: 620462 gcgcggtgctgctgctggcg 620443
>gb|K01838.1|HS2LS52 HSV-2 (strain HG52) L-S inversion region Length = 348 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gcgcgggggcgccgcggaag 302 |||||||||||||||||||| Sbjct: 270 gcgcgggggcgccgcggaag 251
>dbj|AB053455.1| Burkholderia glumae gene for putative HrpO, complete cds Length = 2920 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cgcggtgctgctgctggcgt 339 |||||||||||||||||||| Sbjct: 1320 cgcggtgctgctgctggcgt 1339 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,354,210 Number of Sequences: 3902068 Number of extensions: 3354210 Number of successful extensions: 79144 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77116 Number of HSP's gapped (non-prelim): 2028 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
