ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15b04 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 72.0 bits (175), Expect = 5e-13 Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 9/94 (9%) Frame = +3 Query: 168 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 320 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 321 ESREFLRKLCVGKEATFRVDYAAPNIGREFGTVY 422 +REFLRK +GKE F ++ P GRE+G +Y Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIY 113 Score = 40.0 bits (92), Expect = 0.002 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 323 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 324 SREFLRKLCVGKEATFRVDYAAP 392 +REFLRK +GK+ VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 71.6 bits (174), Expect = 7e-13 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 15/113 (13%) Frame = +3 Query: 129 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 290 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 291 RGGV---------DEPFAWESREFLRKLCVGKEATFRVDYAAPNIGREFGTVY 422 R DEP+A+ +REFLRK +GKE F ++ P GRE+G +Y Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIY 113 Score = 39.3 bits (90), Expect = 0.004 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 323 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 324 SREFLRKLCVGKEATFRVDYAAP 392 +REFLRK +GK+ VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 71.6 bits (174), Expect = 7e-13 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 9/106 (8%) Frame = +3 Query: 132 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 296 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 297 ----GVDEPFAWESREFLRKLCVGKEATFRVDYAAPNIGREFGTVY 422 DEP+A+++REF+RK +GKE F V+ P GRE+G VY Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVY 113 Score = 37.4 bits (85), Expect = 0.014 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 11/81 (13%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 320 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 321 ESREFLRKLCVGKEATFRVDY 383 E+REFLRK +GK+ VDY Sbjct: 403 EAREFLRKKLIGKKVNVTVDY 423
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 71.2 bits (173), Expect = 9e-13 Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%) Frame = +3 Query: 138 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 299 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 300 V---------DEPFAWESREFLRKLCVGKEATFRVDYAAPNIGREFGTVY 422 DEP+A+ +REFLRK +GKE F ++ P GRE+G +Y Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIY 112 Score = 39.7 bits (91), Expect = 0.003 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 323 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 324 SREFLRKLCVGKEATFRVDYAAP 392 +REFLRK +GK+ + VDY P Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRP 423
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 70.1 bits (170), Expect = 2e-12 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 9/94 (9%) Frame = +3 Query: 168 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 320 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 321 ESREFLRKLCVGKEATFRVDYAAPNIGREFGTVY 422 +REFLRK +GKE F ++ P GRE+G +Y Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIY 113 Score = 40.0 bits (92), Expect = 0.002 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +3 Query: 174 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 323 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 324 SREFLRKLCVGKEATFRVDYAAP 392 +REFLRK +GK+ VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 3.0 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +3 Query: 105 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 272 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 273 APRLA 287 PR A Sbjct: 292 LPRTA 296
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 29.6 bits (65), Expect = 3.0 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Frame = -3 Query: 343 FLRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPL 167 FL +SLLS A + PP S R R S S+ + P RR T F L Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377 Query: 166 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 17 P+ P AP P LP +P + + P+ SLL P P P+ Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 108 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 221 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>Y38K_CORSE (Q39635) Hypothetical 38.1 kDa protein| Length = 338 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 309 PFAWESREFLRKLCVGKEATFRVDYAAPNIGREFGTVY 422 PF E++E L KL VGK T + Y GR G +Y Sbjct: 240 PFGKEAKEELIKLVVGKCLTVHI-YEEDRYGRSVGDIY 276
>PHLA_MYCTU (Q04001) Phospholipase C 1 precursor (EC 3.1.4.3) (MTP40 antigen)| Length = 520 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +3 Query: 327 REFLRKLCVGKEATFRVDYAAPNIGREFG 413 REFL KL A F +D+AAP I + +G Sbjct: 12 REFLTKLTGAGAAAFLMDWAAPVIEKAYG 40
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 28.5 bits (62), Expect = 6.7 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Frame = +3 Query: 183 AVTSGDCLLIMG----STKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKLC 350 AV +GD LLI G + + P++++ L + RGG+ AWES + Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWESESKVDLAA 165 Query: 351 VGKEATFRVDYAAPNIG 401 + T + AA +G Sbjct: 166 YHQAKTGALFIAATQMG 182
>GPR56_MACMU (Q50DM8) G-protein coupled receptor 56 precursor| Length = 687 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -2 Query: 410 KFSPDVRSCVIHSECGLLSYAKFPQKLPA 324 KF+PD+R + +SE L +A FP+ PA Sbjct: 49 KFTPDLRISIENSEEALTVHAPFPEAHPA 77
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 28.5 bits (62), Expect = 6.7 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = -3 Query: 316 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 149 A G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 148 VFDAMIAPWDWPAASG 101 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/42 (26%), Positives = 24/42 (57%) Frame = -2 Query: 422 VDSAKFSPDVRSCVIHSECGLLSYAKFPQKLPAFPSKWLIDS 297 +D +KFSP +++ ++ +L++ F +K +W +DS Sbjct: 113 LDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154
>CAR10_HUMAN (Q9BWT7) Caspase recruitment domain-containing protein 10| (CARD-containing MAGUK protein 3) (Carma 3) Length = 1032 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/66 (24%), Positives = 26/66 (39%) Frame = +3 Query: 6 FPPSFGSGSGRERRDQPAGQTXXXXXXXXXXXXLAAGQSQGAIMASNTGASGWLRGKVKA 185 FPPS GS R+R + PA + + +S++ S W GK + Sbjct: 524 FPPSAGSILRRQREEDPAPPKRSFSSMSDITGSVTLKPWSPGLSSSSSSDSVWPLGKPEG 583 Query: 186 VTSGDC 203 + + C Sbjct: 584 LLARGC 589 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,365,060 Number of Sequences: 219361 Number of extensions: 1329450 Number of successful extensions: 3541 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3456 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3535 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
