ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 60 2e-09
2PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiestera... 30 2.1
3STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.... 28 4.6
4PAK1_MOUSE (O88643) Serine/threonine-protein kinase PAK 1 (EC 2.... 28 7.8
5PAK1_HUMAN (Q13153) Serine/threonine-protein kinase PAK 1 (EC 2.... 28 7.8
6GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP) 28 7.8
7PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a ... 28 7.8

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 31/45 (68%), Positives = 31/45 (68%)
 Frame = +1

Query: 157 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAAYGSGDFLRPHGG 291
           MTTDQPVISL             LFAPAFAVAA GSGDFLRPHGG
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGG 45



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>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC|
           3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase)
           (CGS-PDE) (cGSPDE)
          Length = 941

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 12  RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 152
           RSQ  P   P E   +++ FL+   P  PP PC  S + AL+  G++
Sbjct: 12  RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57



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>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)|
           (p46Eg265)
          Length = 407

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 6   GERSQTEPNPPPREEGKKKLGFLRDFLPGAP 98
           G   Q + +  P+EEGKKK   L DF  G P
Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145



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>PAK1_MOUSE (O88643) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)|
           (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK)
           (CDC42/RAC effector kinase PAK-A)
          Length = 545

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 21  TEPNPPPREEGKKKLGFLRDFLPG 92
           ++P PP  EE KKK  F R  LPG
Sbjct: 38  SKPLPPNPEEKKKKDRFYRSILPG 61



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>PAK1_HUMAN (Q13153) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)|
           (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK)
          Length = 545

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 21  TEPNPPPREEGKKKLGFLRDFLPG 92
           ++P PP  EE KKK  F R  LPG
Sbjct: 38  SKPLPPNPEEKKKKDRFYRSILPG 61



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>GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP)|
          Length = 971

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 39  PREEGKKKLGFLRDFLPGAPPIPCRSSC 122
           P E G++   F+R   PGAPP P  + C
Sbjct: 342 PFEPGQRYQEFVRTLQPGAPPPPSPAFC 369



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>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)|
          Length = 618

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 175 LAGLSSWLRVPNPTKAPR 122
           LAGL++W R+P+ T APR
Sbjct: 83  LAGLAAWSRLPSRTGAPR 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,112,336
Number of Sequences: 219361
Number of extensions: 447439
Number of successful extensions: 1502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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