ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA sequence Length = 2863 Score = 184 bits (93), Expect = 1e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 74 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 133 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 134 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 190 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117 Score = 115 bits (58), Expect = 8e-23 Identities = 67/70 (95%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccgcctccggctccggcgacttcctccgcccg 209 Query: 283 cacggcggcg 292 |||||||||| Sbjct: 210 cacggcggcg 219
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA, complete cds Length = 2887 Score = 184 bits (93), Expect = 1e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 74 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 133 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 134 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 190 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117 Score = 115 bits (58), Expect = 8e-23 Identities = 67/70 (95%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccgcctccggctccggcgacttcctccgcccg 209 Query: 283 cacggcggcg 292 |||||||||| Sbjct: 210 cacggcggcg 219
>ref|XM_473052.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2382 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 70 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 129 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 130 cacgtcggcg 139
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Minus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 47821 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 47762 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 47761 cacgtcggcg 47752
>gb|AY224450.1| Oryza sativa (japonica cultivar-group) isolate 23225 eukaryotic initiation factor-like protein mRNA, complete cds Length = 2379 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 70 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 129 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 130 cacgtcggcg 139
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Minus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 24927236 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 24927177 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 24927176 cacgtcggcg 24927167
>emb|AM156961.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5672 Length = 2558 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 243 cacgtcggcg 252
>emb|AM156960.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5673 Length = 2533 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 243 cacgtcggcg 252
>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5681 Length = 2699 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 243 cacgtcggcg 252
>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Gigante Length = 2599 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 80 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 139 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 140 cacgtcggcg 149
>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar IR64 Length = 2599 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 223 cgcctctttgcccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccg 282 |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||| | Sbjct: 73 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 132 Query: 283 cacggcggcg 292 |||| ||||| Sbjct: 133 cacgtcggcg 142
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 71.9 bits (36), Expect = 1e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 233 cccccgccttcgccgtcgccgcctacggctccggcgacttcctccgcccgcacggcggcg 292 ||||||||||||||| |||||||| ||||||||||||||| |||||| | |||| ||||| Sbjct: 55312 cccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcccacgtcggcg 55253
>ref|XM_466679.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2486 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 267 cgacttcctccgcccgcacggcggcg 292 ||||||||||||||||| |||||||| Sbjct: 169 cgacttcctccgcccgcgcggcggcg 194
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 267 cgacttcctccgcccgcacggcggcg 292 ||||||||||||||||| |||||||| Sbjct: 24093957 cgacttcctccgcccgcgcggcggcg 24093932
>gb|AY957387.1| Pseudomonas stutzeri DnrE (dnrE) gene, complete cds; NarL-like (narL) and NarX-like (narX) genes, complete sequence; NarK (narK), NarM (narM), NarG (narG), NarH (narH), NarJ (narJ), and NarI (narI) genes, complete cds; and unknown gene Length = 15150 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 cgccgtcgccgcctacggctcc 264 |||||||||||||||||||||| Sbjct: 6029 cgccgtcgccgcctacggctcc 6050
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 267 cgacttcctccgcccgcacggcggcg 292 ||||||||||||||||| |||||||| Sbjct: 52698 cgacttcctccgcccgcgcggcggcg 52673
>dbj|AK072083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118N03, full insert sequence Length = 3014 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 267 cgacttcctccgcccgcacggcggcg 292 ||||||||||||||||| |||||||| Sbjct: 169 cgacttcctccgcccgcgcggcggcg 194
>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full insert sequence Length = 2907 Score = 44.1 bits (22), Expect = 0.24 Identities = 37/42 (88%) Strand = Plus / Plus Query: 251 ccgcctacggctccggcgacttcctccgcccgcacggcggcg 292 |||||| ||||||||||||||| |||||| | |||| ||||| Sbjct: 139 ccgcctccggctccggcgacttgctccgctcccacgtcggcg 180
>gb|BC021786.1| Mus musculus integral membrane protein 2B, mRNA (cDNA clone MGC:27534 IMAGE:4458918), complete cds Length = 1132 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 111 ccccagccttcgccgtcgccgccta 135
>gb|BC004731.1| Mus musculus integral membrane protein 2B, mRNA (cDNA clone MGC:6390 IMAGE:3583154), complete cds Length = 1577 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 73 ccccagccttcgccgtcgccgccta 97
>ref|NM_008410.1| Mus musculus integral membrane protein 2B (Itm2b), mRNA Length = 1790 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 102 ccccagccttcgccgtcgccgccta 126
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 cgccttcgccgtcgccgcctacggc 261 |||| |||||||||||||||||||| Sbjct: 10616652 cgccgtcgccgtcgccgcctacggc 10616676 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cttcctccgcccgcacggcg 289 |||||||||||||||||||| Sbjct: 31753705 cttcctccgcccgcacggcg 31753686
>gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, complete sequence Length = 236220 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 186930 ccccagccttcgccgtcgccgccta 186954
>gb|BC064434.1| Mus musculus cDNA clone IMAGE:5031911, **** WARNING: chimeric clone **** Length = 2235 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 580 ccccagccttcgccgtcgccgccta 604
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 cgccttcgccgtcgccgcctacggc 261 |||| |||||||||||||||||||| Sbjct: 33566 cgccgtcgccgtcgccgcctacggc 33590
>gb|BC010320.1| Mus musculus integral membrane protein 2B, mRNA (cDNA clone MGC:11918 IMAGE:3599190), complete cds Length = 1125 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 105 ccccagccttcgccgtcgccgccta 129
>dbj|AK152983.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830097L09 product:integral membrane protein 2B, full insert sequence Length = 1782 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 114 ccccagccttcgccgtcgccgccta 138
>dbj|AK152068.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830047A14 product:integral membrane protein 2B, full insert sequence Length = 1778 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 110 ccccagccttcgccgtcgccgccta 134
>dbj|AK151889.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830041O04 product:integral membrane protein 2B, full insert sequence Length = 1790 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 122 ccccagccttcgccgtcgccgccta 146
>dbj|AK151714.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830034P08 product:integral membrane protein 2B, full insert sequence Length = 1797 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 121 ccccagccttcgccgtcgccgccta 145
>dbj|AK159426.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420019N09 product:integral membrane protein 2B, full insert sequence Length = 1758 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 90 ccccagccttcgccgtcgccgccta 114
>dbj|AK159378.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420019A05 product:integral membrane protein 2B, full insert sequence Length = 1611 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 121 ccccagccttcgccgtcgccgccta 145
>dbj|AK159340.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420016M09 product:integral membrane protein 2B, full insert sequence Length = 1580 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 90 ccccagccttcgccgtcgccgccta 114
>dbj|AK159307.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420015F05 product:integral membrane protein 2B, full insert sequence Length = 1739 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 65 ccccagccttcgccgtcgccgccta 89
>dbj|AK152731.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830083F02 product:integral membrane protein 2B, full insert sequence Length = 1588 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 93 ccccagccttcgccgtcgccgccta 117
>dbj|AK152650.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830081M10 product:integral membrane protein 2B, full insert sequence Length = 1790 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 122 ccccagccttcgccgtcgccgccta 146
>dbj|AK152516.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830077N12 product:integral membrane protein 2B, full insert sequence Length = 1790 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 122 ccccagccttcgccgtcgccgccta 146
>dbj|AK150396.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830006K20 product:integral membrane protein 2B, full insert sequence Length = 1611 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 121 ccccagccttcgccgtcgccgccta 145
>dbj|AK150378.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830006A16 product:integral membrane protein 2B, full insert sequence Length = 1790 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 122 ccccagccttcgccgtcgccgccta 146
>dbj|AK160101.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420048O12 product:integral membrane protein 2B, full insert sequence Length = 1758 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 90 ccccagccttcgccgtcgccgccta 114
>dbj|AK159962.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420041C04 product:integral membrane protein 2B, full insert sequence Length = 1761 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 93 ccccagccttcgccgtcgccgccta 117
>dbj|AK160725.1| Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched library, clone:3010095A11 product:integral membrane protein 2B, full insert sequence Length = 1786 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 121 ccccagccttcgccgtcgccgccta 145
>dbj|AK159792.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420031F04 product:integral membrane protein 2B, full insert sequence Length = 1580 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 90 ccccagccttcgccgtcgccgccta 114
>dbj|AK159628.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420026C05 product:integral membrane protein 2B, full insert sequence Length = 1095 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 90 ccccagccttcgccgtcgccgccta 114
>dbj|AK159619.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420025M06 product:integral membrane protein 2B, full insert sequence Length = 1604 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 114 ccccagccttcgccgtcgccgccta 138
>dbj|AK003587.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110008K10 product:integral membrane protein 2B, full insert sequence Length = 1096 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 91 ccccagccttcgccgtcgccgccta 115
>dbj|AK003224.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110001H20 product:integral membrane protein 2B, full insert sequence Length = 1074 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 69 ccccagccttcgccgtcgccgccta 93
>dbj|AK077482.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730420C10 product:integral membrane protein 2B, full insert sequence Length = 1109 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 104 ccccagccttcgccgtcgccgccta 128
>dbj|AK088270.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430009G24 product:integral membrane protein 2B, full insert sequence Length = 1583 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 90 ccccagccttcgccgtcgccgccta 114
>dbj|AK002599.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610012F24 product:integral membrane protein 2B, full insert sequence Length = 1070 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 65 ccccagccttcgccgtcgccgccta 89
>dbj|AK005125.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500002O14 product:integral membrane protein 2B, full insert sequence Length = 1583 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 93 ccccagccttcgccgtcgccgccta 117
>dbj|AK076139.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900026F24 product:integral membrane protein 2B, full insert sequence Length = 1783 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 111 ccccagccttcgccgtcgccgccta 135
>dbj|AK003928.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110025O13 product:integral membrane protein 2B, full insert sequence Length = 1095 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 90 ccccagccttcgccgtcgccgccta 114
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 cgccttcgccgtcgccgcctacggc 261 |||| |||||||||||||||||||| Sbjct: 10614753 cgccgtcgccgtcgccgcctacggc 10614777 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cttcctccgcccgcacggcg 289 |||||||||||||||||||| Sbjct: 31844221 cttcctccgcccgcacggcg 31844202
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 232 gcccccgccttcgccgtcgccgcct 256 |||| |||||||||||||||||||| Sbjct: 7733336 gccctcgccttcgccgtcgccgcct 7733360 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 1981064 ccgccttcgccgtcgccgcc 1981045
>gb|AC154718.2| Mus musculus BAC clone RP24-370G12 from 14, complete sequence Length = 182043 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 171384 ccccagccttcgccgtcgccgccta 171360
>gb|U76253.1|MMU76253 Mus musculus E25B protein mRNA, complete cds Length = 1790 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 102 ccccagccttcgccgtcgccgccta 126
>dbj|AB030203.1| Mus musculus mRNA for E25B protein, complete cds, clone:2-76 Length = 1622 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 cccccgccttcgccgtcgccgccta 257 |||| |||||||||||||||||||| Sbjct: 122 ccccagccttcgccgtcgccgccta 146
>ref|XM_483376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 241 ttcgccgtcgccgcctacggctccggcg 268 |||||||||||||||| ||||| ||||| Sbjct: 1859 ttcgccgtcgccgcctccggctgcggcg 1832
>ref|NM_197083.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.18), mRNA Length = 1005 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 tcgccgtcgccgcctacggc 261 |||||||||||||||||||| Sbjct: 668 tcgccgtcgccgcctacggc 687
>gb|AY023280.1| Oryza sativa microsatellite MRG5605 containing (GGC)X8, closest to marker C185, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 177 ccgccttcgccgtcgccgcc 158 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 153 ccgccttcgccgtcgccgcc 134
>gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha expansin 26 (EXPA26) mRNA, complete cds Length = 1011 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 180 ccgccttcgccgtcgccgcc 161 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 156 ccgccttcgccgtcgccgcc 137
>gb|AF394561.1| Oryza sativa alpha-expansin OsEXPA26 (EXPA26) gene, complete cds Length = 6312 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 4101 ccgccttcgccgtcgccgcc 4082 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 4077 ccgccttcgccgtcgccgcc 4058
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence Length = 147107 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gacagaccagccagtgatca 181 |||||||||||||||||||| Sbjct: 15395 gacagaccagccagtgatca 15376
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cttcctccgcccgcacggcg 289 |||||||||||||||||||| Sbjct: 78931 cttcctccgcccgcacggcg 78912
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gacagaccagccagtgatca 181 |||||||||||||||||||| Sbjct: 106152 gacagaccagccagtgatca 106133
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 ccgccttcgccgtcgccgcctacg 259 ||||||||||||||||| |||||| Sbjct: 953406 ccgccttcgccgtcgccacctacg 953429
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete sequence Length = 148816 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tcgccgtcgccgcctacggc 261 |||||||||||||||||||| Sbjct: 44282 tcgccgtcgccgcctacggc 44263
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 22123379 ccgccttcgccgtcgccgcc 22123360 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 22123355 ccgccttcgccgtcgccgcc 22123336
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 tcgccgtcgccgcctacggc 261 |||||||||||||||||||| Sbjct: 17887759 tcgccgtcgccgcctacggc 17887778
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 ttcgccgtcgccgcctacggctccggcg 268 |||||||||||||||| ||||| ||||| Sbjct: 25924211 ttcgccgtcgccgcctccggctgcggcg 25924238
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 ttcgccgtcgccgcctacggctccggcg 268 |||||||||||||||| ||||| ||||| Sbjct: 109998 ttcgccgtcgccgcctccggctgcggcg 110025
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 ttcgccgtcgccgcctacggctccggcg 268 |||||||||||||||| ||||| ||||| Sbjct: 9088 ttcgccgtcgccgcctccggctgcggcg 9115
>dbj|AK121158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079L12, full insert sequence Length = 2595 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 241 ttcgccgtcgccgcctacggctccggcg 268 |||||||||||||||| ||||| ||||| Sbjct: 2020 ttcgccgtcgccgcctccggctgcggcg 1993
>emb|AJ330169.1|HSA330169 Homo sapiens genomic sequence surrounding NotI site, clone HSJ6-AH12RS Length = 694 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 46 ccgccttcgccgtcgccgcc 27
>dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087C24, full insert sequence Length = 1175 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 199 ccgccttcgccgtcgccgcc 180 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 175 ccgccttcgccgtcgccgcc 156
>dbj|AB059642.1| Perilla frutescens mRNA for putative regulatory protein in anthocyanin biosynthesis, complete cds Length = 1410 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ctccggcgacttcctccgcc 280 |||||||||||||||||||| Sbjct: 317 ctccggcgacttcctccgcc 336
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 ttgcccccgccttcgccgtcgccg 253 |||||| ||||||||||||||||| Sbjct: 1991866 ttgccctcgccttcgccgtcgccg 1991889
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gccgcctacggctccggcga 269 |||||||||||||||||||| Sbjct: 514352 gccgcctacggctccggcga 514371
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 tcgccgtcgccgcctacggc 261 |||||||||||||||||||| Sbjct: 17897012 tcgccgtcgccgcctacggc 17897031
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 22051724 ccgccttcgccgtcgccgcc 22051705 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 22051700 ccgccttcgccgtcgccgcc 22051681
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155585 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 129655 ccgccttcgccgtcgccgcc 129674 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 ccgccttcgccgtcgccgcc 255 |||||||||||||||||||| Sbjct: 129631 ccgccttcgccgtcgccgcc 129650 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,461,607 Number of Sequences: 3902068 Number of extensions: 1461607 Number of successful extensions: 32849 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31987 Number of HSP's gapped (non-prelim): 862 length of query: 292 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 270 effective length of database: 17,147,199,772 effective search space: 4629743938440 effective search space used: 4629743938440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
