ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NEU2_LOXAF (P81768) Neurophysin 2 (Neurophysin-II) (E-NP) 28 7.1
2NEU2_CATCO (P15211) Isoticin-neurophysin IT 2 precursor [Contain... 28 7.1
3Y041_HAEI8 (Q4QPL1) UPF0247 protein NTHI0041 28 7.1

>NEU2_LOXAF (P81768) Neurophysin 2 (Neurophysin-II) (E-NP)|
          Length = 92

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 286 KCFKPTVCFGESTTI*SGSCQRLRC 360
           +CF P++C GE      G+ + LRC
Sbjct: 20  RCFGPSICCGEELGCFVGTAEALRC 44



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>NEU2_CATCO (P15211) Isoticin-neurophysin IT 2 precursor [Contains: Isotocin|
           (IT); Neurophysin IT 2]
          Length = 148

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 286 KCFKPTVCFGESTTI*SGSCQRLRC 360
           +CF P++C GE      GS + LRC
Sbjct: 52  RCFGPSICCGEGLGCLLGSPETLRC 76



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>Y041_HAEI8 (Q4QPL1) UPF0247 protein NTHI0041|
          Length = 155

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +3

Query: 33  IASCAHGGHGYFIRFRLEDLNW--PSKNDVLTA--NGGC*MIRFLINGPLGSS*LCKAVN 200
           +A+C   G G  +   +    W  P   + L A  N GC  +  LI GP G S  CKA  
Sbjct: 61  LAAC---GKGKVVTLDIPGKPWTTPQLAEQLEAWKNDGC-DVCLLIGGPEGLSPECKAAA 116

Query: 201 FDKWYISP 224
              W +SP
Sbjct: 117 EQSWSLSP 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,245,126
Number of Sequences: 219361
Number of extensions: 990309
Number of successful extensions: 1878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1878
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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