ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl15a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
2dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
3dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 1.3
4emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on ch... 42 1.3
5gb|AC151796.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 5.0
6gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome... 40 5.0
7gb|AC142288.1| Pan troglodytes BAC clone RP43-178D12 from 7, com... 40 5.0
8emb|X70336.1|BCACPSF1 B.campestris (ACP-SF1) gene for acyl carri... 40 5.0
9gb|AC018356.26| Homo sapiens 3 BAC RP11-258G22 (Roswell Park Can... 40 5.0
10gb|AC125468.5| Mus musculus BAC clone RP24-113D21 from 7, comple... 40 5.0
11gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, compl... 40 5.0
12gb|AC005685.1|AC005685 Homo sapiens clone UWGC:g1397a149 from 7p... 40 5.0
13gb|AC161441.21| Mus musculus chromosome 7, clone RP24-158L15, co... 40 5.0

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 25       gcatatatatagctagctgtgc 46
                ||||||||||||||||||||||
Sbjct: 27606824 gcatatatatagctagctgtgc 27606803



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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0135D07
          Length = 170587

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    gcatatatatagctagctgtgc 46
             ||||||||||||||||||||||
Sbjct: 86493 gcatatatatagctagctgtgc 86472



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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 321     tactacaatctgatctggaag 341
               |||||||||||||||||||||
Sbjct: 3278103 tactacaatctgatctggaag 3278083



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>emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete
              sequence
          Length = 177741

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 34     tagctagctgtgcacatggtggtca 58
              ||||||||||||||||||| |||||
Sbjct: 143764 tagctagctgtgcacatggaggtca 143788



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>gb|AC151796.1| Ornithorhynchus anatinus chromosome UNK clone OABb-11A1, complete
             sequence
          Length = 130877

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   aactgctaatggtggttgtt 138
             ||||||||||||||||||||
Sbjct: 20631 aactgctaatggtggttgtt 20612



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>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence
          Length = 165569

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   atgaaacgagtggttgttgg 256
             ||||||||||||||||||||
Sbjct: 80888 atgaaacgagtggttgttgg 80869



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>gb|AC142288.1| Pan troglodytes BAC clone RP43-178D12 from 7, complete sequence
          Length = 187294

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   aatggcccattaggtagcag 178
             ||||||||||||||||||||
Sbjct: 59653 aatggcccattaggtagcag 59634



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>emb|X70336.1|BCACPSF1 B.campestris (ACP-SF1) gene for acyl carrier protein
          Length = 3955

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 139 aaatgattcggtttttgatt 158
           ||||||||||||||||||||
Sbjct: 120 aaatgattcggtttttgatt 101



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>gb|AC018356.26| Homo sapiens 3 BAC RP11-258G22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120846

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   aatggcccattaggtagcag 178
             ||||||||||||||||||||
Sbjct: 88727 aatggcccattaggtagcag 88708



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>gb|AC125468.5| Mus musculus BAC clone RP24-113D21 from 7, complete sequence
          Length = 197913

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   tctcaccccatgtgtaactg 236
             ||||||||||||||||||||
Sbjct: 16260 tctcaccccatgtgtaactg 16279



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>gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, complete sequence
          Length = 175641

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    aattttgataagtggtatat 217
              ||||||||||||||||||||
Sbjct: 130767 aattttgataagtggtatat 130786



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>gb|AC005685.1|AC005685 Homo sapiens clone UWGC:g1397a149 from 7p14-15, complete sequence
          Length = 42648

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   aatggcccattaggtagcag 178
             ||||||||||||||||||||
Sbjct: 11284 aatggcccattaggtagcag 11303



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>gb|AC161441.21| Mus musculus chromosome 7, clone RP24-158L15, complete sequence
          Length = 159403

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   tctcaccccatgtgtaactg 236
             ||||||||||||||||||||
Sbjct: 45433 tctcaccccatgtgtaactg 45414


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,995,404
Number of Sequences: 3902068
Number of extensions: 2995404
Number of successful extensions: 56422
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56366
Number of HSP's gapped (non-prelim): 56
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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