>OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (Orp150)|
           (Hypoxia up-regulated 1)
          Length = 999

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +1

Query: 178 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNR 312
           +DLGSE +KVA V   PG  P+ + +N+ S+RK+P +  L +  R
Sbjct: 38  VDLGSESMKVAIV--KPG-VPMEIVLNKESRRKTPVIVTLKENER 79

>OXRP_RAT (Q63617) 150 kDa oxygen-regulated protein precursor (Orp150)|
           (Hypoxia up-regulated 1)
          Length = 999

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 178 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNR 312
           +DLGSE +KVA V   PG  P+ + +N+ S+RK+P    L +  R
Sbjct: 38  VDLGSESMKVAIV--KPG-VPMEIVLNKESRRKTPVTVTLKENER 79

>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)|
           (Hypoxia up-regulated 1) (170 kDa glucose-regulated
           protein)
          Length = 999

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 178 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNR 312
           +DLGSE +KVA V   PG  P+ + +N+ S+RK+P    L +  R
Sbjct: 38  VDLGSESMKVAIV--KPG-VPMEIVLNKESRRKTPVTVTLKENER 79

>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate|
           methylesterase 2 (EC 3.1.1.61)
          Length = 373

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLA 88
           APAPS+ ASSRSP P P      +P A
Sbjct: 151 APAPSSFASSRSPAPAPAPARAAAPAA 177

>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)|
          Length = 731

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -2

Query: 120 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 10
           EQE     GER  GL G HAGG+G G      +D +G
Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138

>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)|
          Length = 485

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 11  PAPSTLASSRSPNPDPPACHPTSPLARSP 97
           P+P   ASSR P+P PP+  P SP   SP
Sbjct: 231 PSPQPTASSRPPSP-PPSPRPPSPPPPSP 258

>IGHA1_GORGO (P20758) Ig alpha-1 chain C region|
          Length = 353

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 5   RAPA-PSTLASSRSPNPDPPACHPTSPLAR 91
           R P+ P T + S  P P PP CHP   L R
Sbjct: 102 RVPSTPPTPSPSTPPTPSPPCCHPRLSLHR 131

>HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)|
          Length = 264

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
 Frame = +2

Query: 11  PAPSTLASSRSPNPDPPAC------HPTSPLARSP 97
           PAP + AS+ SP+P PPAC      HP+S  ++ P
Sbjct: 100 PAPLSGASA-SPSPAPPACSQPAPDHPSSAASKQP 133

>TER_EUGGR (Q5EU90) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.44)
          Length = 539

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 305 PSASAASAGDLRLDISLMATAIGARPGARCTAATLS 198
           PSA+  SAG L L ++ +  A G+ P A  TA+T S
Sbjct: 7   PSAAVVSAGALCLCVATVLLATGSNPTALSTASTRS 42

>SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit)
          Length = 1079

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 11   PAPSTLASSRSPNPDPPACHPTSPLARSP 97
            P PS +A   SP+P P    P +P A SP
Sbjct: 924  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 952

>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit) (Protein foggy)
          Length = 1084

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 11   PAPSTLASSRSPNPDPPACHPTSPLARSP 97
            P PS +A   SP+P P    P +P A SP
Sbjct: 930  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 958

>SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit)
          Length = 1083

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 11   PAPSTLASSRSPNPDPPACHPTSPLARSP 97
            P PS +A   SP+P P    P +P A SP
Sbjct: 928  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 956

>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)|
          Length = 264

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
 Frame = +2

Query: 11  PAPSTLASSRSPNPDPPAC------HPTSPLARSP 97
           PAP +  +S SP+P PPAC      HP+S  ++ P
Sbjct: 100 PAPLS-GTSASPSPAPPACSQPAPDHPSSAASKQP 133

>SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5) (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit) (DSIF p160) (Tat-cotransactivator 1 protein)
            (Tat-CT1 protein)
          Length = 1087

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 11   PAPSTLASSRSPNPDPPACHPTSPLARSP 97
            P PS +A   SP+P P    P +P A SP
Sbjct: 932  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 960

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 5    RAPAPSTLASSRSPNPDPPACHPTSP 82
            R PA  T +S   P+P PPA  P +P
Sbjct: 2832 RNPAEPTSSSPAGPSPPPPAVQPVAP 2857

>SPT5H_MOUSE (O55201) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit)
          Length = 1082

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 11   PAPSTLASSRSPNPDPPACHPTSPLARSP 97
            P PS +A   SP+P P    P +P A SP
Sbjct: 926  PTPSPMAYQASPSPSPVGYSPMTPGAPSP 954

>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1839

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +2

Query: 23  TLASSRSP----NPDPPACHPTSPLARSP 97
           TL  +++P    NP PP+ HP +PLA  P
Sbjct: 705 TLVPAKTPSIYANPTPPSSHPFTPLADDP 733

>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144)
          Length = 344

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%)
 Frame = +2

Query: 5   RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 82
           +AP+P+TL   SS  P+P            PPA HPTSP
Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300

>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144) (Zfp-144)
          Length = 342

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%)
 Frame = +2

Query: 5   RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 82
           +AP+P+TL   SS  P+P            PPA HPTSP
Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           +PAP +  S   P+P PP+  P SP   SP
Sbjct: 72  SPAPPSPPSPAPPSPAPPSPAPPSPAPPSP 101



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           +PAP +  S   P+P PPA  P SP+  SP
Sbjct: 222 SPAPPSPPSPAPPSPSPPA--PPSPVPPSP 249



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           +PAP + A    P+P PP+  P +P + SP
Sbjct: 110 SPAPPSPAPPSPPSPAPPSPSPPAPPSPSP 139



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           +PAP + +    P+P PP+  P SP   SP
Sbjct: 230 SPAPPSPSPPAPPSPVPPSPAPPSPAPPSP 259



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           +PAP +  S   P+P PPA  P SP   SP
Sbjct: 115 SPAPPSPPSPAPPSPSPPA--PPSPSPPSP 142



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           +P P + A    P+P PP+  P SP   SP
Sbjct: 67  SPGPPSPAPPSPPSPAPPSPAPPSPAPPSP 96

>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 114

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SRAPAPSTLASSRSPNPDPPACHPTSPL 85
           S+A  PS   SS SP+P PP  HP +P+
Sbjct: 39  SQAGHPS---SSSSPSPGPPTKHPKTPM 63

>PRP28_CRYNE (Q5KNF8) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC|
           3.6.1.-)
          Length = 738

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 132 DEGEEQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 10
           D   E+E RRH  ER     G++AG SG  D +    DG G
Sbjct: 62  DRAAEEERRRHEQER----YGYNAGPSGRNDRDGYGRDGYG 98

>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2)
          Length = 889

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 5   RAPAPSTLASSRSPNPDPPACHPTSPLA-RSP 97
           R P P    ++ SP P PPA  P +P + R+P
Sbjct: 759 RRPPPGPAPAAASPGPPPPASPPGAPASPRAP 790

>SMYD5_CHICK (Q5ZIZ2) SET and MYND domain-containing protein 5|
          Length = 420

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 293 AASAGDLRLDISLMATAIGARPGARCTAATLSHSEPR 183
           AA+AGD+R        A+GARPG    AA  + +E R
Sbjct: 2   AAAAGDVR------GAALGARPGLGAAAAAAAAAEAR 32

>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 831

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 3   PVLPPRPHSRAPDPRTLTPPHAIPLA 80
           P+ PP P S +P P + TPP   P A
Sbjct: 716 PLRPPSPMSSSPTPPSSTPPSPQPKA 741

>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
          (Fragment)
          Length = 198

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 15 PRPHSRAPDPRTLTPPHAIP 74
          P P  R PDP +  PPHA P
Sbjct: 25 PDPTRRHPDPESRAPPHARP 44

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 5   RAPAPSTLASSRSPNPDPPACH---PTSPLARSP 97
           R+P+P      RSP+P PP      P+ P  RSP
Sbjct: 542 RSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSP 575

>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 6    VLPPRPHSRAPDPRTLTPPHAIP 74
            V PP PH  +P P   TPP  +P
Sbjct: 1040 VPPPGPHGPSPFPNQQTPPSMMP 1062

>YAM6_SCHPO (Q10061) Heat shock protein 70 homolog precursor|
          Length = 848

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 178 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRL 315
           ID G+EW K A +   PG  P+ + + + ++RK  +  A     R+
Sbjct: 27  IDYGTEWTKAALI--KPG-IPLEIVLTKDTRRKEQSAVAFKGNERI 69

>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2|
          Length = 916

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           APAPS+  ++R+P+    A  P  P   SP
Sbjct: 206 APAPSSAPAARAPSSPSSAPRPARPAGASP 235

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 2   SRAPAPSTLASSRSPNPDPPACHPTSPLA 88
           +RAP P+    S  P P+P    P +P A
Sbjct: 760 ARAPLPAPAPPSTPPGPEPAPAQPAAPRA 788

>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2|
          Length = 902

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           APAPS+  ++R+P+    A  P  P   SP
Sbjct: 192 APAPSSAPAARAPSSPSSAPRPARPAGASP 221

>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 2   SRAPAPSTLASSRSPNPDPPACHPTSPLARSP 97
           SRA  P T A S  P P PPA   +SP A +P
Sbjct: 220 SRAGCP-TAAGSLLPAPRPPASSASSPQAAAP 250

>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 6    VLPPRPHSRAPDPRTLTPPHAIP 74
            V PP PH  +P P   TPP  +P
Sbjct: 1040 VPPPGPHGPSPFPNQPTPPSMMP 1062

>BCCP_ARATH (Q42533) Biotin carboxyl carrier protein of acetyl-CoA carboxylase,|
           chloroplast precursor (BCCP)
          Length = 280

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 8   APAPSTLASSRSPNPDPPACHPTSPLARSP 97
           APAPST AS   P+P  PA   + P  +SP
Sbjct: 181 APAPSTPASLPPPSPPTPA-KSSLPTVKSP 209

>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum|
           protein MSE55)
          Length = 391

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 8   APAPSTLASSRSP--NPDPPACHPTSPLARSP 97
           A  P+T A+  +P  NP  PA  PT P A  P
Sbjct: 243 ANPPATTANPPAPAANPSAPAATPTGPAANPP 274

>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
           (214 kDa nucleoporin) (CAN protein)
          Length = 2090

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 2   SRAPAPSTLASSRSPNPDPPACHPTSPLARS 94
           S +P PS +   +SP   PPA  P SP A+S
Sbjct: 655 SSSPVPSMV--QKSPRITPPAAKPGSPQAKS 683


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,040,797
Number of Sequences: 219361
Number of extensions: 480810
Number of successful extensions: 4576
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 3573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4525
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)