>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 42/53 (79%), Positives = 43/53 (81%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           LY ELWHACAGPLVTVPR  D V+YFPQGHIEQ EAS NQ A  QM LYDLPS
Sbjct: 58  LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPS 110

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 37/60 (61%), Positives = 44/60 (73%)
 Frame = +3

Query: 135 GTSTGDPLYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           G    D L  ELWHACAGPLVT+PR G+ VYYFP+GH+EQ EASM+Q    QM  ++LPS
Sbjct: 12  GGVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPS 71

>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 35/56 (62%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
 Frame = +3

Query: 147 GDPLYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMR-LYDLP 311
           G+ LYDELW  CAGPLV VP+  + VYYFPQGH+EQ EAS  QV  N M+ L+ LP
Sbjct: 6   GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLP 61

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
 Frame = +3

Query: 141 STGDPLYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQ-VAANQMRLYDLP 311
           S  D LY ELW ACAGPLV VPR G+ V+YFPQGH+EQ  AS NQ V   ++ +++LP
Sbjct: 13  SNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLP 70

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +3

Query: 150 DPLYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQ-VAANQMRLYDLP 311
           D LY ELW  CAGPLV VPR  + V+YFPQGH+EQ  AS NQ + + ++ ++DLP
Sbjct: 20  DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLP 74

>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           +Y++LW  CAGPL  +P++G+ VYYFPQGHIE  EAS  +       + D PS
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPS 76

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +3

Query: 165 ELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLY-DLPS 314
           ELWHACAGPLV +P+VG +VYYF QGH EQ   S  + A  Q+  Y +LPS
Sbjct: 54  ELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPS 104

>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 27/53 (50%), Positives = 35/53 (66%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           +Y++LW  CAGPL  +P++G+ VYYFPQGHIE  EAS  +         DLPS
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPS 76

>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           +Y++LW  CAGPL  +P++G+ VYYFPQGHIE  E S  +       + DLPS
Sbjct: 24  VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPS 76

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = +3

Query: 153 PLYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQ 275
           P+  +LWHACAGPLV++P VG +V YFPQGH EQ  ASM +
Sbjct: 19  PINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQK 59

>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 26/53 (49%), Positives = 36/53 (67%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           +Y++LW  CAGPL  +P++G+ VYYFPQG+IE  EAS  +       + DLPS
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPS 76

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = +3

Query: 138 TSTGDPLYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQE 257
           T +   +Y ELWHACAGPL  +P+ G++V YFPQGH+EQ+
Sbjct: 56  TGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQD 95

>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 26/53 (49%), Positives = 36/53 (67%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           +Y++LW+ CAGPL  +P+ G+ VYYFPQGHIE  E S      +   ++DLPS
Sbjct: 24  MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPS 76

>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           +Y++LW  CAGPL  +P++G+ +YYFPQG+IE  EAS  +       + DLPS
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPS 76

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQ 275
           L  ELWHACAGPLV++P VG  V YFPQGH EQ  AS N+
Sbjct: 20  LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNK 59

>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           +Y++LW  CAGPL  +P++G+ VYYFPQG+IE  +AS  +       + DLPS
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPS 76

>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +3

Query: 156 LYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDLPS 314
           +Y++LW  CAGPL  +P++G+ VYYFPQG+IE  +AS  +       + DLPS
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPS 76

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = +3

Query: 165 ELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQ 275
           ELWHACAGPL+++P  G +V YFPQGH EQ  ASM +
Sbjct: 24  ELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQK 60

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 27/48 (56%), Positives = 31/48 (64%)
 Frame = +3

Query: 132 QGTSTGDPLYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEASMNQ 275
           QG      L  ELWHACAGPLV++P  G  V YFPQGH EQ  A+ N+
Sbjct: 11  QGHEGEKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNK 58

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = +3

Query: 141 STGDPLYDELWHACAGPLVTVPRVGDMVYYFPQGHIEQ 254
           S G  +  ELWHACAGPL+++P+ G +V YFPQGH+EQ
Sbjct: 46  SAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLEQ 83

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = +3

Query: 135 GTSTGDPLYDELWHACAGPLVTVPRVGDMVYYFPQGHIE 251
           GT  G  L  +LWHACAG +V +P +   V+YFPQGH E
Sbjct: 11  GTEKG--LDPQLWHACAGGMVRMPPMNSKVFYFPQGHAE 47

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +3

Query: 165 ELWHACAGPLVTVPRVGDMVYYFPQGHIEQEEA 263
           +LWHACAG +V +P +   V+YF QGH E   A
Sbjct: 10  QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHA 42

>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 168 LWHACAGPLVTVPRVGDMVYYFPQGHIE 251
           +W ACAG  V +P +   VYYFPQGH+E
Sbjct: 20  IWRACAGASVQIPVLHSRVYYFPQGHVE 47

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 201  VPRVGDMVYYFPQGHIEQEEASMNQVAANQMRLYDL 308
            VP++GD V YFPQGH    EA +  V  N   +Y+L
Sbjct: 959  VPQMGDEVIYFPQGH----EAYIEAVRRN--NIYEL 988

>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
            [Includes: ATP-dependent asparagine adenylase (AsnA)
            (Asparagine activase); ATP-dependent glutamine adenylase
            (GlnA) (Glutamine activase); ATP-dependent tyrosine
            adenylase (TyrA) (Ty
          Length = 6486

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 198  TVPRVGDMVYYFPQGHIE 251
            T+ R GDMV Y P GHIE
Sbjct: 1871 TMYRTGDMVRYLPDGHIE 1888

>GR65_HUMAN (Q9BQQ3) Golgi reassembly-stacking protein 1 (Golgi|
           reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi
           peripheral membrane protein p65) (Golgi phosphoprotein
           5) (GOLPH5)
          Length = 439

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
 Frame = -1

Query: 268 MEASSCSMWPCGK**TMSPTRGTVTSGPAQACQSSS---------YSGSPVEV 137
           ++ S+ S+WP     T   T    TSGP   C SSS         +SGS  EV
Sbjct: 315 LDNSNASVWPSLPSSTELTTTAVSTSGPEDICSSSSSHERGGEATWSGSEFEV 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.130    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,313,294
Number of Sequences: 219361
Number of extensions: 293594
Number of successful extensions: 1076
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)