ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl15a05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189992.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 238 bits (120), Expect = 9e-60 Identities = 168/184 (91%) Strand = Plus / Plus Query: 133 agggcacctccacaggggatccgctgtacgacgagctctggcacgcctgcgccggcccgc 192 ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||| Sbjct: 23 agggctcctccacaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgc 82 Query: 193 tcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcagggccacatcgagc 252 ||||||||||||||||||| || ||| | |||| ||||||||||||||| |||||||||| Sbjct: 83 tcgtcaccgtgccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagc 142 Query: 253 aggaggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgccct 312 ||| |||||| |||||||||||||| |||| || |||||||||||||||||||||||||| Sbjct: 143 aggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgccct 202 Query: 313 ccaa 316 |||| Sbjct: 203 ccaa 206
>dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full insert sequence Length = 3151 Score = 238 bits (120), Expect = 9e-60 Identities = 168/184 (91%) Strand = Plus / Plus Query: 133 agggcacctccacaggggatccgctgtacgacgagctctggcacgcctgcgccggcccgc 192 ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||| Sbjct: 245 agggctcctccacaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgc 304 Query: 193 tcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcagggccacatcgagc 252 ||||||||||||||||||| || ||| | |||| ||||||||||||||| |||||||||| Sbjct: 305 tcgtcaccgtgccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagc 364 Query: 253 aggaggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgccct 312 ||| |||||| |||||||||||||| |||| || |||||||||||||||||||||||||| Sbjct: 365 aggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgccct 424 Query: 313 ccaa 316 |||| Sbjct: 425 ccaa 428
>dbj|AB071293.1| Oryza sativa OsARF2 mRNA for auxin response factor 2, partial cds Length = 2376 Score = 218 bits (110), Expect = 8e-54 Identities = 155/170 (91%) Strand = Plus / Plus Query: 147 ggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgccg 206 ||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 1 ggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgccg 60 Query: 207 cgggtcggggacatggtctactacttcccgcagggccacatcgagcaggaggaggcctcc 266 ||||| || ||| | |||| ||||||||||||||| ||||||||||||| |||||| ||| Sbjct: 61 cgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcaggtggaggcgtcc 120 Query: 267 atgaaccaggtcgccgccaaccagatgcgcctctacgatctgccctccaa 316 ||||||||||| |||| || |||||||||||||||||||||||||||||| Sbjct: 121 atgaaccaggttgccgacagccagatgcgcctctacgatctgccctccaa 170
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 141 bits (71), Expect = 2e-30 Identities = 101/111 (90%) Strand = Plus / Plus Query: 145 caggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgc 204 ||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||| Sbjct: 40688393 caggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgc 40688452 Query: 205 cgcgggtcggggacatggtctactacttcccgcagggccacatcgagcagg 255 ||||||| || ||| | |||| ||||||||||||||| ||||||||||||| Sbjct: 40688453 cgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcagg 40688503 Score = 91.7 bits (46), Expect = 1e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 251 gcaggaggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgcc 310 ||||| |||||| |||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 40688608 gcaggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgcc 40688667 Query: 311 ctccaa 316 |||||| Sbjct: 40688668 ctccaa 40688673
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 141 bits (71), Expect = 2e-30 Identities = 101/111 (90%) Strand = Plus / Plus Query: 145 caggggatccgctgtacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtgc 204 ||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||| Sbjct: 130371 caggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgc 130430 Query: 205 cgcgggtcggggacatggtctactacttcccgcagggccacatcgagcagg 255 ||||||| || ||| | |||| ||||||||||||||| ||||||||||||| Sbjct: 130431 cgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcagg 130481 Score = 91.7 bits (46), Expect = 1e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 251 gcaggaggaggcctccatgaaccaggtcgccgccaaccagatgcgcctctacgatctgcc 310 ||||| |||||| |||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 130586 gcaggtggaggcgtccatgaaccaggttgccgacagccagatgcgcctctacgatctgcc 130645 Query: 311 ctccaa 316 |||||| Sbjct: 130646 ctccaa 130651
>dbj|AK067061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091D19, full insert sequence Length = 3265 Score = 81.8 bits (41), Expect = 1e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 210 gtcggggacatggtctactacttcccgcagggccacatcgagcaggaggaggcctccatg 269 |||||||| | ||||| |||| |||||||||||||||||||||||| |||||| || | | Sbjct: 428 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtggaggcatcgacg 487 Query: 270 aaccaggtcgccg 282 ||||||||||||| Sbjct: 488 aaccaggtcgccg 500
>dbj|AK065254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J11, full insert sequence Length = 3100 Score = 81.8 bits (41), Expect = 1e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 210 gtcggggacatggtctactacttcccgcagggccacatcgagcaggaggaggcctccatg 269 |||||||| | ||||| |||| |||||||||||||||||||||||| |||||| || | | Sbjct: 279 gtcggggagagggtcttctacctcccgcagggccacatcgagcaggtggaggcatcgacg 338 Query: 270 aaccaggtcgccg 282 ||||||||||||| Sbjct: 339 aaccaggtcgccg 351
>emb|AJ306306.1|OSA306306 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene) Length = 2511 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 180 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 239 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 85 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 144 Query: 240 ggccacatcgagcaggaggaggcctc 265 || ||||||||||||| ||||||||| Sbjct: 145 gggcacatcgagcaggtggaggcctc 170
>dbj|AK065936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A03, full insert sequence Length = 3338 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 180 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 239 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 367 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 426 Query: 240 ggccacatcgagcaggaggaggcctc 265 || ||||||||||||| ||||||||| Sbjct: 427 gggcacatcgagcaggtggaggcctc 452
>gb|AF140228.2| Oryza sativa (indica cultivar-group) putative auxin response factor 1 mRNA, partial cds Length = 2574 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 227 ctacttcccgcagggccacatcgagcaggaggaggcctc 265 ||||||||||||||| ||||||||||||| ||||||||| Sbjct: 180 ctacttcccgcaggggcacatcgagcaggtggaggcctc 218
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 4e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 210 gtcggggacatggtctactacttcccgcagggccacatcgagcagg 255 |||||||| | ||||| |||| |||||||||||||||||||||||| Sbjct: 17618225 gtcggggagagggtcttctacctcccgcagggccacatcgagcagg 17618180
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 4e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 210 gtcggggacatggtctactacttcccgcagggccacatcgagcagg 255 |||||||| | ||||| |||| |||||||||||||||||||||||| Sbjct: 17572596 gtcggggagagggtcttctacctcccgcagggccacatcgagcagg 17572551
>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162200 Score = 60.0 bits (30), Expect = 4e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 210 gtcggggacatggtctactacttcccgcagggccacatcgagcagg 255 |||||||| | ||||| |||| |||||||||||||||||||||||| Sbjct: 110561 gtcggggagagggtcttctacctcccgcagggccacatcgagcagg 110516
>ref|XM_474307.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2457 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 ||||| ||||||||||||||||||||||||||| Sbjct: 91 gagctatggcacgcctgcgccggcccgctcgtc 123 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 153 ctacttcccgcaaggccacagcgagcagg 181
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17, complete sequence Length = 159894 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 ||||| ||||||||||||||||||||||||||| Sbjct: 43419 gagctatggcacgcctgcgccggcccgctcgtc 43387 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 43357 ctacttcccgcaaggccacagcgagcagg 43329
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 ||||| ||||||||||||||||||||||||||| Sbjct: 34319016 gagctatggcacgcctgcgccggcccgctcgtc 34318984 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 34318954 ctacttcccgcaaggccacagcgagcagg 34318926 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 tactacttcccgcagggccac 245 ||||||||||||||||||||| Sbjct: 25986973 tactacttcccgcagggccac 25986993
>dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full insert sequence Length = 3262 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 ||||| ||||||||||||||||||||||||||| Sbjct: 426 gagctatggcacgcctgcgccggcccgctcgtc 458 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 488 ctacttcccgcaaggccacagcgagcagg 516
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 ||||| ||||||||||||||||||||||||||| Sbjct: 91307 gagctatggcacgcctgcgccggcccgctcgtc 91275 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 91245 ctacttcccgcaaggccacagcgagcagg 91217
>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete sequence Length = 100419 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 ||||| ||||||||||||||||||||||||||| Sbjct: 4172 gagctatggcacgcctgcgccggcccgctcgtc 4140 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 4110 ctacttcccgcaaggccacagcgagcagg 4082
>dbj|AB071298.1| Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds Length = 2388 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 ||||| ||||||||||||||||||||||||||| Sbjct: 22 gagctatggcacgcctgcgccggcccgctcgtc 54 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 84 ctacttcccgcaaggccacagcgagcagg 112
>gb|DQ013802.1| Phyllostachys praecox ARF1 mRNA, partial cds Length = 1108 Score = 56.0 bits (28), Expect = 7e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 227 ctacttcccgcagggccacatcgagcaggaggaggcctccatgaaccaggtcgccg 282 ||||||||| ||||| ||||||||||||| ||||| || | |||||||||||||| Sbjct: 156 ctacttccctcaggggcacatcgagcaggtcgaggcgtcgacgaaccaggtcgccg 211
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 56.0 bits (28), Expect = 7e-05 Identities = 64/76 (84%) Strand = Plus / Minus Query: 180 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 239 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 133893 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 133834 Query: 240 ggccacatcgagcagg 255 || ||||||||||||| Sbjct: 133833 gggcacatcgagcagg 133818
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 56.0 bits (28), Expect = 7e-05 Identities = 64/76 (84%) Strand = Plus / Minus Query: 180 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 239 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 10662 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 10603 Query: 240 ggccacatcgagcagg 255 || ||||||||||||| Sbjct: 10602 gggcacatcgagcagg 10587
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 56.0 bits (28), Expect = 7e-05 Identities = 64/76 (84%) Strand = Plus / Minus Query: 180 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 239 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 42556 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 42497 Query: 240 ggccacatcgagcagg 255 || ||||||||||||| Sbjct: 42496 gggcacatcgagcagg 42481
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 7e-05 Identities = 64/76 (84%) Strand = Plus / Minus Query: 180 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 239 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 18275297 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 18275238 Query: 240 ggccacatcgagcagg 255 || ||||||||||||| Sbjct: 18275237 gggcacatcgagcagg 18275222
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 7e-05 Identities = 64/76 (84%) Strand = Plus / Minus Query: 180 tgcgccggcccgctcgtcaccgtgccgcgggtcggggacatggtctactacttcccgcag 239 ||||| || ||||| || || |||||| |||| ||||| | ||| | ||||||||||||| Sbjct: 18434577 tgcgcggggccgctggtgacggtgccgagggttggggagaaggtgttctacttcccgcag 18434518 Query: 240 ggccacatcgagcagg 255 || ||||||||||||| Sbjct: 18434517 gggcacatcgagcagg 18434502
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 284 caaccagatgcgcctctacgatctgcc 310 ||||||||||||||||||||||||||| Sbjct: 33117211 caaccagatgcgcctctacgatctgcc 33117237
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 284 caaccagatgcgcctctacgatctgcc 310 ||||||||||||||||||||||||||| Sbjct: 33207721 caaccagatgcgcctctacgatctgcc 33207747
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 284 caaccagatgcgcctctacgatctgcc 310 ||||||||||||||||||||||||||| Sbjct: 127344 caaccagatgcgcctctacgatctgcc 127318
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 284 caaccagatgcgcctctacgatctgcc 310 ||||||||||||||||||||||||||| Sbjct: 6097 caaccagatgcgcctctacgatctgcc 6071
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 |||||||||||||||||| || ||||||||||| Sbjct: 28541929 gagctctggcacgcctgctccagcccgctcgtc 28541961 Score = 48.1 bits (24), Expect = 0.017 Identities = 30/32 (93%) Strand = Plus / Minus Query: 165 gagctctggcacgcctgcgccggcccgctcgt 196 ||||| |||||||| ||||||||||||||||| Sbjct: 2214437 gagctgtggcacgcgtgcgccggcccgctcgt 2214406 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 28541991 ctacttcccgcaaggccacagcgagcagg 28542019
>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1053A04 Length = 144321 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 |||||||||||||||||| || ||||||||||| Sbjct: 5942 gagctctggcacgcctgctccagcccgctcgtc 5974 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 6004 ctacttcccgcaaggccacagcgagcagg 6032
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 165 gagctctggcacgcctgcgccggcccgctcgtc 197 |||||||||||||||||| || ||||||||||| Sbjct: 110770 gagctctggcacgcctgctccagcccgctcgtc 110802 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 227 ctacttcccgcagggccacatcgagcagg 255 |||||||||||| ||||||| |||||||| Sbjct: 110832 ctacttcccgcaaggccacagcgagcagg 110860
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3420 Score = 48.1 bits (24), Expect = 0.017 Identities = 30/32 (93%) Strand = Plus / Plus Query: 165 gagctctggcacgcctgcgccggcccgctcgt 196 ||||| |||||||| ||||||||||||||||| Sbjct: 121 gagctgtggcacgcgtgcgccggcccgctcgt 152
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_E07 Length = 113187 Score = 48.1 bits (24), Expect = 0.017 Identities = 30/32 (93%) Strand = Plus / Minus Query: 165 gagctctggcacgcctgcgccggcccgctcgt 196 ||||| |||||||| ||||||||||||||||| Sbjct: 1386 gagctgtggcacgcgtgcgccggcccgctcgt 1355
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 48.1 bits (24), Expect = 0.017 Identities = 30/32 (93%) Strand = Plus / Minus Query: 165 gagctctggcacgcctgcgccggcccgctcgt 196 ||||| |||||||| ||||||||||||||||| Sbjct: 129130 gagctgtggcacgcgtgcgccggcccgctcgt 129099
>emb|AJ716227.1| Brassica napus mRNA for putative auxin response factor (ARF2 gene) Length = 2547 Score = 44.1 bits (22), Expect = 0.27 Identities = 31/34 (91%) Strand = Plus / Plus Query: 222 gtctactacttcccgcagggccacatcgagcagg 255 |||| ||||||||| ||||| ||||||||||||| Sbjct: 223 gtcttctacttccctcaggggcacatcgagcagg 256
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Plus Query: 155 gctgtacgacgagctctggcacgcct 180 ||||||||||||||||||||| |||| Sbjct: 542525 gctgtacgacgagctctggcaggcct 542550
>ref|XM_473206.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2088 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 tactacttcccgcagggccac 245 ||||||||||||||||||||| Sbjct: 112 tactacttcccgcagggccac 132
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 cggcccgctcgtcaccgtgccgcgg 209 ||||||| ||||||||||||||||| Sbjct: 962603 cggcccgatcgtcaccgtgccgcgg 962627
>dbj|AK100795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F07, full insert sequence Length = 2826 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 tactacttcccgcagggccac 245 ||||||||||||||||||||| Sbjct: 168 tactacttcccgcagggccac 188
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 tactacttcccgcagggccac 245 ||||||||||||||||||||| Sbjct: 21300 tactacttcccgcagggccac 21320
>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence Length = 139226 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 tactacttcccgcagggccac 245 ||||||||||||||||||||| Sbjct: 113235 tactacttcccgcagggccac 113255
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 cgagctctggcacgcctgcgccgg 187 |||||| ||||||||||||||||| Sbjct: 44804 cgagctgtggcacgcctgcgccgg 44827
>ref|XM_958709.1| Neurospora crassa OR74A hypothetical protein (NCU00802.1) partial mRNA Length = 1716 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctggcacgcctgcgccggcc 189 |||||||||||||||||||| Sbjct: 51 ctggcacgcctgcgccggcc 32
>ref|XM_324981.1| Neurospora crassa OR74A hypothetical protein (NCU00802.1) partial mRNA Length = 1716 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ctggcacgcctgcgccggcc 189 |||||||||||||||||||| Sbjct: 51 ctggcacgcctgcgccggcc 32
>gb|AC158139.11| Mus musculus chromosome 1, clone RP23-431H7, complete sequence Length = 201254 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 gagcaggaggaggcctccatgaaccagg 276 ||||||||||||||| ||||||| |||| Sbjct: 11607 gagcaggaggaggccaccatgaagcagg 11634
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gctcgtcaccgtgccgcgggtcgg 214 |||||||||||||| ||||||||| Sbjct: 1733792 gctcgtcaccgtgcggcgggtcgg 1733769
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 gccggcccgctcgtcaccgtgccg 206 |||||||||||| ||||||||||| Sbjct: 1559767 gccggcccgctcttcaccgtgccg 1559744
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 cgagctctggcacgcctgcgccgg 187 |||||| ||||||||||||||||| Sbjct: 27814387 cgagctgtggcacgcctgcgccgg 27814410
>dbj|AK099793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E23, full insert sequence Length = 2712 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 cgagctctggcacgcctgcgccgg 187 |||||| ||||||||||||||||| Sbjct: 335 cgagctgtggcacgcctgcgccgg 358
>dbj|AB071290.1| Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1, complete cds Length = 2622 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 cgagctctggcacgcctgcgccgg 187 |||||| ||||||||||||||||| Sbjct: 227 cgagctgtggcacgcctgcgccgg 250 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,063,990 Number of Sequences: 3902068 Number of extensions: 1063990 Number of successful extensions: 18882 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18544 Number of HSP's gapped (non-prelim): 338 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
