ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14h10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 140 bits (352), Expect = 1e-33 Identities = 70/71 (98%), Positives = 70/71 (98%) Frame = +2 Query: 107 MLLGGLIDTLTGANKGARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 286 MLLGGLIDTLTGANK ARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 60 Query: 287 AVDQDNGGRGK 319 AVDQDNGGRGK Sbjct: 61 AVDQDNGGRGK 71
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 123 bits (308), Expect = 1e-28 Identities = 58/70 (82%), Positives = 67/70 (95%) Frame = +2 Query: 110 LLGGLIDTLTGANKGARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGG+IDT+TG++K +RLKGTVVLMRKNVLDLNDFGAT+IDG+GEFLGKGVTCQLISSTA Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTA 60 Query: 290 VDQDNGGRGK 319 VD +NG RGK Sbjct: 61 VDPNNGNRGK 70
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 104 bits (260), Expect = 5e-23 Identities = 50/70 (71%), Positives = 61/70 (87%) Frame = +2 Query: 110 LLGGLIDTLTGANKGARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGG+I LTG NK ARLKG++VLMRKN LD+NDFGAT+IDGI EFLG+GVTCQL+SS+ Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSL 59 Query: 290 VDQDNGGRGK 319 VD +NG RG+ Sbjct: 60 VDPNNGNRGR 69
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 73.9 bits (180), Expect = 9e-14 Identities = 35/69 (50%), Positives = 48/69 (69%) Frame = +2 Query: 110 LLGGLIDTLTGANKGARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGGL D LTG N G ++KG VLM + +LD DF A+++D + E G +TCQL+S+T Sbjct: 1 MLGGLKDKLTGKN-GNKIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATV 59 Query: 290 VDQDNGGRG 316 DQ+N GRG Sbjct: 60 ADQNNEGRG 68
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 72.8 bits (177), Expect = 2e-13 Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 3/73 (4%) Frame = +2 Query: 110 LLGGLIDTLTGANKGA---RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLIS 280 + G L D LTG ++KGTVVLM+KNVLD NDF A+ +D + EFLG +T +L+S Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVS 60 Query: 281 STAVDQDNGGRGK 319 S D +NG +GK Sbjct: 61 SDVTDSENGSKGK 73
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 69.7 bits (169), Expect = 2e-12 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 6/77 (7%) Frame = +2 Query: 107 MLLGGLIDTLTGANKGA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLG--KGVTC 268 M + G D LTG NK A R++GT VL++K+VL L DF A+++DG+ LG +GV Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 269 QLISSTAVDQDNGGRGK 319 +L+S+TA D NGGRGK Sbjct: 61 RLVSATARDPSNGGRGK 77
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 63.5 bits (153), Expect = 1e-10 Identities = 28/60 (46%), Positives = 44/60 (73%) Frame = +2 Query: 107 MLLGGLIDTLTGANKGARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 286 M LGG++D + G + ++KG V+LM+KNVLD + GA+++DGI + LG+ V+ QLIS + Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISGS 60
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 58.2 bits (139), Expect = 5e-09 Identities = 33/70 (47%), Positives = 44/70 (62%) Frame = +2 Query: 110 LLGGLIDTLTGANKGARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 L+GGLI G + ++KGTVV+M+KN LD D ++ D I E LG+ V+ QLISS Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQ 61 Query: 290 VDQDNGGRGK 319 D NG +GK Sbjct: 62 SDPANGLQGK 71
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 53.5 bits (127), Expect = 1e-07 Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 18/74 (24%) Frame = +2 Query: 146 NKGARLKGTVVLMRKNVLDLN--------------DFGATII----DGIGEFLGKGVTCQ 271 NKG +++GTVVLMRKNVLD N D G II DG+ FLG+ V+ Q Sbjct: 10 NKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQ 69 Query: 272 LISSTAVDQDNGGR 313 LIS+T D + G+ Sbjct: 70 LISATKSDANGKGK 83
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 52.8 bits (125), Expect = 2e-07 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 13/69 (18%) Frame = +2 Query: 146 NKGARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFLGKGVTCQLISST 286 N+G ++KGTVVLMRKNVLD+N D + +D + FLG+ V+ QLIS+T Sbjct: 10 NRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISAT 69 Query: 287 AVDQDNGGR 313 D G+ Sbjct: 70 KPDATGKGK 78
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 51.6 bits (122), Expect = 5e-07 Identities = 27/60 (45%), Positives = 37/60 (61%) Frame = +2 Query: 140 GANKGARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGK 319 G + ++KGTVV+M KNVLD D ++ I + LG+ V+ QLISS D NG +GK Sbjct: 12 GHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGK 71
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 50.4 bits (119), Expect = 1e-06 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 13/81 (16%) Frame = +2 Query: 110 LLGGLIDTLTGANKGARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFL 250 +LGGL+ ++G ++KGTVVLMRKNVL +N D + +D + FL Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFL 54 Query: 251 GKGVTCQLISSTAVDQDNGGR 313 G+ V+ QLIS+T D + G+ Sbjct: 55 GRPVSLQLISATKADANGKGK 75
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 49.3 bits (116), Expect = 2e-06 Identities = 25/54 (46%), Positives = 36/54 (66%) Frame = +2 Query: 152 GARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGR 313 G ++KGTVVLM KN L++N G+ +D + FLG+ V+ QLIS+T D G+ Sbjct: 5 GHKIKGTVVLMPKNELEVNPDGSA-VDNLNAFLGRSVSLQLISATKADAHGKGK 57
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 45.8 bits (107), Expect = 3e-05 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 20/75 (26%) Frame = +2 Query: 149 KGARLKGTVVLMRKNVLDLN--------------------DFGATIIDGIGEFLGKGVTC 268 +G +LKGTV+LM+KNVLD+N +IID FLG+ V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 269 QLISSTAVDQDNGGR 313 +LIS+T D G+ Sbjct: 68 RLISATVADASGKGK 82
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 44.7 bits (104), Expect = 6e-05 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 13/70 (18%) Frame = +2 Query: 149 KGARLKGTVVLMRKNVLDLNDF---GATIIDGIGEFLGKGV----------TCQLISSTA 289 KG ++KGT+V+M+KNVLD+N G + G+G F+G V + QLIS+T Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLG-FIGSAVDALTFAATKISIQLISATK 65 Query: 290 VDQDNGGRGK 319 D GG+GK Sbjct: 66 AD---GGKGK 72
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 44.7 bits (104), Expect = 6e-05 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 22/78 (28%) Frame = +2 Query: 146 NKGARLKGTVVLMRKNVLDLNDF------------------GATIIDGI----GEFLGKG 259 +KG ++KGTVVLM KNVLD N G +++ G+ FLG+ Sbjct: 6 DKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN 65 Query: 260 VTCQLISSTAVDQDNGGR 313 ++ QLIS+T D G+ Sbjct: 66 ISMQLISATQTDGSGNGK 83
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 44.3 bits (103), Expect = 8e-05 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 23/81 (28%) Frame = +2 Query: 146 NKGARLKGTVVLMRKNVLDLNDFGAT----------------------IIDGIGEFLGKG 259 N+G ++KGTVVLM KNV D N+F +T I+DG + Sbjct: 6 NRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN 65 Query: 260 VTCQLISSTAVD-QDNGGRGK 319 + QLIS+T D NG GK Sbjct: 66 IAIQLISATKTDGLGNGKVGK 86
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 18/63 (28%) Frame = +2 Query: 152 GARLKGTVVLMRKNVLDLNDFG------------------ATIIDGIGEFLGKGVTCQLI 277 G ++KGTVVLMRKNVLD N + +D + FLG+ V QLI Sbjct: 16 GHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLI 75 Query: 278 SST 286 S+T Sbjct: 76 SAT 78
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 31.6 bits (70), Expect = 0.52 Identities = 16/38 (42%), Positives = 17/38 (44%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQGRPAQGHGGAH 183 G + RRGG DA G D GG GR GG H Sbjct: 116 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 131 TLTGANKGARLKGTVVLMRKNVLDLNDFGATI 226 TL G K R +GTV+ + + +L DFGAT+ Sbjct: 261 TLEGTRKQIREEGTVITGQNQLQNLGDFGATL 292
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.0 bits (66), Expect = 1.5 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = +1 Query: 79 KARRGGQEQDAAGRADR-----HPHGGE--QGRPAQGHGGAHAQER 195 + RGGQ Q A R P GG QG AQG GA +QER Sbjct: 260 QGNRGGQRQGAGAGGPRPQGGPRPQGGSRPQGGSAQGAQGAPSQER 305
>FA98A_MOUSE (Q3TJZ6) Protein FAM98A| Length = 515 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +1 Query: 88 RGGQEQDAAGRADRHPHGGEQGRPAQGHGG 177 RGG E + G H GG GR + HGG Sbjct: 340 RGGYEHSSYGGRGGHEQGGRGGRGSYDHGG 369
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 79 KARRGGQEQDAAGRADRHPHGGEQGRPAQG 168 KAR GG+E+ AG + GG++G G Sbjct: 129 KARAGGEEKKGAGEGGKDGEGGKEGEKKNG 158
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = +1 Query: 103 QDAAGRADRHPHGGEQGR----PAQGHGGAHAQ 189 Q GR D+ PH G++GR P QG G H Q Sbjct: 679 QGQKGRQDQSPHLGQKGRHDQSPHQGQKGRHDQ 711 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%) Frame = +1 Query: 79 KARRGGQEQDA----AGRADRHPHGGEQGR----PAQGHGGAHAQ 189 + ++G Q+Q GR D+ PH G++GR P QG G Q Sbjct: 355 RGQKGRQDQSPHQGQKGRQDQSPHRGQKGRQDQSPHQGQKGRQDQ 399
>FA98A_RAT (Q5FWT1) Protein FAM98A| Length = 515 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +1 Query: 88 RGGQEQDAAGRADRHPHGGEQGRPAQGHGG 177 RGG E + G H GG GR HGG Sbjct: 340 RGGYEHSSYGGRGGHEQGGRGGRGGYDHGG 369
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +1 Query: 79 KARRGGQEQDAAGRADRHPHGGEQGRPAQGHGGAHAQER 195 K +RG + AG R PHG G P GHG +Q+R Sbjct: 2453 KDQRGPYPPEVAGMGMR-PHGFRFGFPGAGHGPMPSQDR 2490
>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)| Length = 1273 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Frame = -1 Query: 321 TFPRPPLSWS-TAVELISWQVTPLPRNSPMPSMMVAPKSLRSS 196 T P PPLS + ++V ++S PL +NS +PS++ +S R+S Sbjct: 963 TMPPPPLSRAPSSVSMVS--PPPLHKNSRVPSLVATSESPRAS 1003
>KSGA_SYNPX (Q7U7D3) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 302 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/45 (42%), Positives = 20/45 (44%) Frame = +1 Query: 55 LVPLVGAVKARRGGQEQDAAGRADRHPHGGEQGRPAQGHGGAHAQ 189 L P V AR Q DAA AD H HG G+ GGA Q Sbjct: 258 LAPQVWVALARGLNQGIDAAS-ADGHDHGDGSGQGESSPGGARDQ 301
>DBP2_ASHGO (Q755N4) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 557 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 79 KARRGGQEQDAAGRADRHPHGGEQGRPAQGHGGAH 183 +A RGG GR R GG GR G+GG + Sbjct: 496 RAPRGGFHPRYGGRGGRGGRGGRGGRGYGGYGGGY 530
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 261 TPLPRNSPMPSMMVAPKSLRSSTFLRMSTTV 169 TP P S PS++ +L S F+RM +T+ Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKSTL 271
>RL2_XANCP (Q8PC46) 50S ribosomal protein L2| Length = 275 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +1 Query: 79 KARRGGQE--QDAAGRADRHPHGGEQGRPAQGH 171 K RRG + + AA A+ HPHGG + + QG+ Sbjct: 211 KRRRGVRPTVRGAAMNANDHPHGGGEAKAGQGN 243
>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)| Length = 351 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQG-RPAQGHGG 177 G A G EQ AAG P G +G +PA G GG Sbjct: 187 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 223 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQG-RPAQGHGG 177 G A G EQ AAG P G +G +PA G GG Sbjct: 160 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 196 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQG-RPAQGHGG 177 G A G EQ AAG P G +G +PA G GG Sbjct: 106 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 142
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQGRPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q RP+ G H Q R Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 356 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQGRPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q RP+ G H Q R Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 333
>FKB70_WHEAT (Q43207) 70 kDa peptidyl-prolyl isomerase (EC 5.2.1.8)| (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) Length = 559 Score = 27.3 bits (59), Expect = 9.9 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = +1 Query: 40 VKNSVLVP-LVGAVKARRGGQEQDAAGRADRHPHG-GEQGRPAQGHGGA 180 VK+ L P L AVK + G++ A + +G GE GRPA G GGA Sbjct: 203 VKDGHLCPALAKAVKTMKKGEKVLLAVKPQ---YGFGEMGRPAAGEGGA 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,116,400 Number of Sequences: 219361 Number of extensions: 627430 Number of successful extensions: 2158 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2136 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
