>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
          Length = 1744

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 299  IHEEDPEKDGIGGGDTRNPQRLAGSRRTGAREQC*RISADPEVAD 165
            +H +  +  GI G DT  PQR  GS  +G  +     ++D E AD
Sbjct: 1411 LHSDGTDTRGIAGSDTGGPQRRRGSVESGRGDD----ASDSEAAD 1451

>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin|
           binding protein I) (Protein phosphatase 1 regulatory
           subunit 9A)
          Length = 1098

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 89  RRKPERSIHEGGDRRRGAAPACRSGGRPPQD 181
           R+  ERS+HE G   R +    ++GG  PQD
Sbjct: 143 RKMFERSVHESGQNNRYSPKKEKAGGSEPQD 173

>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
 Frame = +3

Query: 12  SSTLFPLSPAPHPRLSPSALA*GS--CRGENPRD-----RSMRAGTAGGELLRRADPVVG 170
           S TL  L   P P  SPSA A G+   RG  PRD      S   G    E L      + 
Sbjct: 18  SLTLVKLESVPPPPPSPSAAAAGAPGARGSEPRDPGSPRGSEEPGKKRHERLFHRQDALW 77

Query: 171 HLRIC*NPSALLPCSCSPTPGQPLRIASISP 263
                       P + SP P  P R  S +P
Sbjct: 78  ISTSSAGTGGAEPPALSPAPASPARPVSPAP 108

>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1459

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 83  LPRRKPERSIHEGGDRRRGAAPACRSGGRPPQDLLKSFSIAPLLLFSDSRP 235
           LP  KP  +I+  G+RR   +       RPP  L  S  + PLLL +   P
Sbjct: 504 LPSSKPRYAINHSGERRPSISQ------RPPTRLTPSVFVPPLLLGNIENP 548

>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
 Frame = +3

Query: 12  SSTLFPLSPAPHPRLSPSALA*GS--CRGENPRD-RSMRAGTAGGE-----LLRRADPVV 167
           S TL  L   P P  SPSA A G+   RG  PRD  S R     G+     L  R D + 
Sbjct: 18  SLTLVKLESVPPPPPSPSAAAVGAPGARGSEPRDPGSPRGAEEPGKKRHERLFHRQDALW 77

Query: 168 GHLRIC*NPSALLPCSCSPTPGQPLRIASISP 263
                        P + SP P  P R  S +P
Sbjct: 78  ISTSSA-GAGGAEPPALSPAPASPARPVSPAP 108

>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
           (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
 Frame = +3

Query: 12  SSTLFPLSPAPHPRLSPSALA*GS--CRGENPRD-RSMRAGTAGGE-----LLRRADPVV 167
           S TL  L   P P  SPSA A G+   RG  PRD  S R     G+     L  R D + 
Sbjct: 18  SLTLVKLESVPPPPPSPSAAAVGAPGARGSEPRDPGSPRGAEEPGKKRHERLFHRQDALW 77

Query: 168 GHLRIC*NPSALLPCSCSPTPGQPLRIASISP 263
                        P + SP P  P R  S +P
Sbjct: 78  ISTSSA-GAGGAEPPALSPAPASPARPVSPAP 108

>IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Iroquois|
           homeobox protein 1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 23/88 (26%), Positives = 36/88 (40%)
 Frame = +3

Query: 6   PHSSTLFPLSPAPHPRLSPSALA*GSCRGENPRDRSMRAGTAGGELLRRADPVVGHLRIC 185
           PH++   P  PAP P   P A+A G+  G+    RS               P +    + 
Sbjct: 397 PHAAPHGPHLPAPPPPQPPVAIAPGALNGDKASVRS--------------SPTLPERDLV 442

Query: 186 *NPSALLPCSCSPTPGQPLRIASISPSD 269
             P +  P     +P QP+R  S++P +
Sbjct: 443 PRPDS--PAQQLKSPFQPVRDNSLAPQE 468

>OTRA_STRRM (Q55002) Oxytetracycline resistance protein|
          Length = 663

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 298 FTRRIPKRTESEGEILAIRRGW-PGVGEQEQGSNAEG 191
           F +R+P  T+ EG  LA  RG+ P VG+       EG
Sbjct: 610 FNQRVPGLTQGEGVFLAEHRGYRPAVGQPPVRPRPEG 646

>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3|
           (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
           (eIF4GII)
          Length = 1579

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 27  PLSPAPHP-RLSPSALA*GSCRGENPRDRSMRAGTAGGELLRRADPVVGHLRIC*NPSAL 203
           P S APH  +L  S +      G   +  S +  T G  L +   P+   L I  +P   
Sbjct: 336 PCSVAPHDSQLISSTILINEMNGVGEK-LSAKENTVG-MLRQEVLPLTLELEILEHPQEE 393

Query: 204 LPCSCSPTPGQPLRIASISPS 266
           L   C+PTP  P  + + SP+
Sbjct: 394 LKVECTPTPIAPSMLPAFSPA 414

>AGUA_ERWCT (Q6CZ80) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 368

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 338 REKILHQIPACDLIHEEDPEKDGIGGGDTRNPQRLAGSRRTGA 210
           RE  + ++PA   +H    E  G+  GD    +RLAGSR  G+
Sbjct: 265 RELKIWKLPAPGPLHATKEEAQGVDSGDA--VERLAGSRLAGS 305

>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go related gene potassium channel 1) (H-ERG)
            (Erg1) (Ether-a-go-go related protein 1) (Eag-related
            protein 1) (eag homo
          Length = 1159

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 328  FSTRFQHAT*FTRRIPKRTESEGEILAIRRGWPGVGEQEQG 206
            FS + +    F RR  K TE  GE+ A+  G  G G   +G
Sbjct: 881  FSRQRKRKLSFRRRTDKDTEQPGEVSALGPGRAGAGPSSRG 921

>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)|
          Length = 174

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 86  PRRKPERSIHEGGDRRRGAAP-ACRSGGRPPQDLLKS 193
           P  KPER   +GGD+ +G  P   +  G PPQ+  KS
Sbjct: 134 PPGKPERPPPQGGDQSQGPPPHPGKPEGPPPQEGNKS 170

>SENP1_MOUSE (P59110) Sentrin-specific protease 1 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP1)
          Length = 640

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
 Frame = +3

Query: 24  FPLSPAPHPRLSPSALA*GSCRGE--NPRDRSMRAGTAGGELLRRADPVVGHLRIC*NPS 197
           FP+ PAP P  S      GSCR    +P+    R  +   E ++  +  + + ++    +
Sbjct: 150 FPIKPAPSPSWS------GSCRRSLLSPKKTQRRHFSTAEETVQEEEKEI-YRQLLQMVT 202

Query: 198 ALLPCSCSPTPGQPLRIA-SISPSDSVLFGILLVNQVACWNLVENFLTKCSG 350
               C   PT   PLR++  +S + + L   LL N  +C + V    T  SG
Sbjct: 203 GKQFCVAKPTTHFPLRLSRCLSSNKNSLKDSLLRNGNSCASHVIGSDTSSSG 254

>OPRM_MOUSE (P42866) Mu-type opioid receptor (MOR-1)|
          Length = 398

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 168 GHLRIC*NPSALLPCSCSPTPGQPLRIASISPSDS 272
           G++  C +P  L P SCSP PG  L ++ +  + S
Sbjct: 8   GNISDCSDP--LAPASCSPAPGSWLNLSHVDGNQS 40

>SYTL2_HUMAN (Q9HCH5) Synaptotagmin-like protein 2 (Exophilin-4)|
          Length = 895

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 356 ASTRTFREKILHQIPACDLIHEEDPEKDGIGGGDTRNPQR 237
           +S  T  E +L + PA +L H  +PE   + GG +R+ Q+
Sbjct: 432 SSELTRLESVLPRSPADELSHCVEPEPSQVPGGSSRDRQQ 471

>YCY9_YEAST (P25657) Hypothetical 18.0 kDa protein in GIT1-PAU3 intergenic|
           region
          Length = 155

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 347 RTFREKILHQIPACDLIHEEDPE 279
           RTF++ ILH+IP CD   E D E
Sbjct: 50  RTFKDMILHEIP-CDSCTESDYE 71

>RAE1L_ARATH (Q38942) Rae1-like protein At1g80670|
          Length = 349

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 219 SPTPGQPLRIASISPSDSVLFGILLVNQVACWNL 320
           +P+P   +   S SP   +L      NQV CW +
Sbjct: 21  TPSPADSISSLSFSPRADILVATSWDNQVRCWEI 54

>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 86  PRRKPERSIHEGGDRRRGAAPACRSGGRPPQ 178
           P  KP+    +GG+R +G  P  +  G PPQ
Sbjct: 236 PPGKPQGPPQQGGNRPQGPPPPGKPQGPPPQ 266

>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2|
           (Voltage-gated potassium channel subunit Kv11.1)
           (Ether-a-go-go-related gene potassium channel 1) (ERG1)
           (RERG) (ra-erg) (Ether-a-go-go-related protein 1)
           (Eag-related protein 1)
          Length = 1161

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 298 FTRRIPKRTESEGEILAIRRGWPGVGEQEQG 206
           F RR  K TE  GE+ A+  G  G G   +G
Sbjct: 893 FRRRTDKDTEQPGEVSALGPGRAGAGPSSRG 923

>SYL_AERPE (Q9YD97) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 959

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 155 RSGGRPPQDLLKSFSIAPLLLFSDSRPTSAD 247
           RSGG P +DLL+ F     LL +   P +A+
Sbjct: 757 RSGGEPREDLLRRFIEVQTLLIAPFAPHTAE 787

>PAIP1_HUMAN (Q9H074) Polyadenylate-binding protein-interacting protein 1|
           (Poly(A)-binding protein-interacting protein 1)
           (PABP-interacting protein 1) (PAIP-1)
          Length = 479

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 116 EGGDRRRGAAPACRSGGRPPQDLLKSF-SIAPLLLFSDSRPTSADCE 253
           EGG    GA PA R+  +PPQ     F    PL     + P  A CE
Sbjct: 27  EGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCE 73

>TOB2_MOUSE (Q9JM55) Tob2 protein (Transducer of erbB-2 2)|
          Length = 345

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 9   HSSTLFPLSPAPHPRLSPSA 68
           HS  L P +PAP  +LSP+A
Sbjct: 239 HSLNLIPANPAPQSQLSPNA 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,657,209
Number of Sequences: 219361
Number of extensions: 1134363
Number of successful extensions: 3748
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3740
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)