ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_429433.1| PREDICTED: Gallus gallus LOC416464 (LOC416464), mRNA Length = 850 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aggatctgctgaaatccttc 196 |||||||||||||||||||| Sbjct: 475 aggatctgctgaaatccttc 456
>gb|AC110102.6| Rattus norvegicus 4 BAC CH230-209C7 (Children's Hospital Oakland Research Institute) complete sequence Length = 219273 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 116 gagggcggggaccgccggcggggagctg 143 ||||||||||| |||| ||||||||||| Sbjct: 120744 gagggcggggagcgcccgcggggagctg 120771
>gb|AC087102.3| Rattus norvegicus strain Brown Norway clone RP31-331N5, complete sequence Length = 151673 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 116 gagggcggggaccgccggcggggagctg 143 ||||||||||| |||| ||||||||||| Sbjct: 116184 gagggcggggagcgcccgcggggagctg 116157
>gb|AF489529.1| Rattus norvegicus caveolin 1 gene, promoter region and partial cds Length = 6809 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 116 gagggcggggaccgccggcggggagctg 143 ||||||||||| |||| ||||||||||| Sbjct: 2428 gagggcggggagcgcccgcggggagctg 2401
>gb|AC023173.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-11G22, complete sequence Length = 203451 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 116 gagggcggggaccgccggcggggagctg 143 ||||||||||| ||||||||||||||| Sbjct: 106228 gagggcggggagtgccggcggggagctg 106201
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 116 gagggcggggaccgccggcggggagctg 143 ||||||||||| |||| ||||||||||| Sbjct: 322432 gagggcggggagcgcccgcggggagctg 322405
>gb|AF124227.1|AF124227 Mus musculus caveolin-1 gene, promoter region and 5' UTR, partial sequence Length = 1311 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 116 gagggcggggaccgccggcggggagctg 143 ||||||||||| ||||||||||||||| Sbjct: 1086 gagggcggggagtgccggcggggagctg 1059 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,766,189 Number of Sequences: 3902068 Number of extensions: 1766189 Number of successful extensions: 30307 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30299 Number of HSP's gapped (non-prelim): 8 length of query: 370 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 348 effective length of database: 17,147,199,772 effective search space: 5967225520656 effective search space used: 5967225520656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
