ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14h06 |
|---|---|
| Clone Library Name | barley_pub |
>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated| protein 130) (SAP 130) (SF3b130) (Pre-mRNA splicing factor SF3b 130 kDa subunit) (STAF130) Length = 1217 Score = 79.3 bits (194), Expect = 2e-15 Identities = 42/78 (53%), Positives = 53/78 (67%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 308 M+LY+LTLQRATG A+ G+FSG + QEI V+RG L+LLRPDP TG++ Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSG----------TKQQEIVVSRGKILELLRPDPNTGKV 50 Query: 309 RTLLXVDIFGAIRSLAQF 362 TLL V++FG IRSL F Sbjct: 51 HTLLTVEVFGVIRSLMAF 68
>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1| Length = 1221 Score = 68.9 bits (167), Expect = 3e-12 Identities = 38/78 (48%), Positives = 48/78 (61%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 308 MYLY+LTLQ + V+G FSG + QEI VA+G L+LLRPD +TG++ Sbjct: 4 MYLYNLTLQASGSVNATVVGQFSG----------TRQQEIIVAKGSRLELLRPDTQTGKV 53 Query: 309 RTLLXVDIFGAIRSLAQF 362 T+L D FG IRSLA F Sbjct: 54 DTVLSHDAFGVIRSLAAF 71
>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1| Length = 1271 Score = 64.7 bits (156), Expect = 5e-11 Identities = 34/78 (43%), Positives = 46/78 (58%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 308 M+LYSLT+Q T A++G FSG + Q+I A G L LL+PDP G++ Sbjct: 7 MFLYSLTIQPPTAVTQALLGQFSG----------TKEQQILTASGSRLTLLQPDPRQGKV 56 Query: 309 RTLLXVDIFGAIRSLAQF 362 TLL DIFG +R++A F Sbjct: 57 NTLLSHDIFGIVRAIASF 74
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 58.2 bits (139), Expect = 5e-09 Identities = 30/78 (38%), Positives = 43/78 (55%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 308 M++YSLT+Q T A++G F AG+ Q+I A G L + RPDP G++ Sbjct: 7 MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKI 56 Query: 309 RTLLXVDIFGAIRSLAQF 362 + D+FG IR+LA F Sbjct: 57 TPIYSQDVFGIIRTLAAF 74
>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1| Length = 1226 Score = 57.8 bits (138), Expect = 6e-09 Identities = 31/78 (39%), Positives = 43/78 (55%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 308 M++YSLT+Q T A++G F AG+ Q+I A G L + RPDP G++ Sbjct: 7 MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKV 56 Query: 309 RTLLXVDIFGAIRSLAQF 362 L D+FG IR+LA F Sbjct: 57 IPLYTQDVFGIIRTLAAF 74
>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1| Length = 1229 Score = 57.0 bits (136), Expect = 1e-08 Identities = 31/78 (39%), Positives = 43/78 (55%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 308 M+LYSL++Q + A++G FSG + Q+I A G L L RPDP G++ Sbjct: 7 MFLYSLSIQPPSTITRAILGQFSG----------TKEQQIVAASGSRLTLYRPDPTQGKV 56 Query: 309 RTLLXVDIFGAIRSLAQF 362 L+ D+FG IR LA F Sbjct: 57 VPLMSHDVFGIIRDLASF 74
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 53.9 bits (128), Expect = 9e-08 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT-LDLLRPDPETGR 305 M+L +LTL T AV+GSFSG S +QEI RGGT L++ + + TG+ Sbjct: 1 MHLLNLTLSSPTNVSTAVVGSFSG----------SKSQEILCVRGGTKLEIFKLNATTGQ 50 Query: 306 LRTLLXVDIFGAIRSLAQF 362 L T++ + FG IR++A F Sbjct: 51 LDTIVSTEAFGTIRNIAGF 69
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 42.0 bits (97), Expect = 4e-04 Identities = 23/76 (30%), Positives = 43/76 (56%) Frame = +3 Query: 126 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 305 ++YLY+LT++ + + +++G F G +KKS QEI +A +++L + D TG+ Sbjct: 7 SLYLYNLTIKHPSLCIASIVGQFLG--NKKS-------QEIILANSTSIELWKADSNTGK 57 Query: 306 LRTLLXVDIFGAIRSL 353 L + FG I+ + Sbjct: 58 LEKIYQQASFGIIQGI 73
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/76 (27%), Positives = 40/76 (52%) Frame = +3 Query: 126 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 305 ++YLY+LTL+ + + +++G F +D+ NA Q++ + TL L + E G+ Sbjct: 39 SVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNA-----QQLVLVSSTTLQLFEINEEAGK 93 Query: 306 LRTLLXVDIFGAIRSL 353 L ++ G I S+ Sbjct: 94 LELQSSQNLLGIINSI 109
>RSE1_SCHPO (Q9UTT2) Pre-mRNA-splicing factor rse1 (Pre-mRNA processing protein| 12) (Spliceosome associated protein 130) Length = 1206 Score = 38.5 bits (88), Expect = 0.004 Identities = 23/77 (29%), Positives = 39/77 (50%) Frame = +3 Query: 126 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 305 +++LYSLT+Q + + S SG+ + QEI +A L + + D GR Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGKKA----------QEIVIATESRLLIYKVDATDGR 55 Query: 306 LRTLLXVDIFGAIRSLA 356 + +L + FG IR++A Sbjct: 56 MNCILNQNCFGIIRNVA 72
>RSE1_CANGA (Q6FLQ6) Pre-mRNA-splicing factor RSE1| Length = 1296 Score = 32.7 bits (73), Expect = 0.22 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKK 215 M LY LTLQR + V +V GSF GRDS + Sbjct: 1 MELYHLTLQRQSNYVHSVKGSFLGRDSNE 29
>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1| Length = 1288 Score = 30.4 bits (67), Expect = 1.1 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 12/88 (13%) Frame = +3 Query: 129 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQ------------EIAVARGGTL 272 ++LY ++LQ+ V + IG F A G S + +I +A + Sbjct: 7 LHLYHVSLQKQRNYVHSCIGHFVDYRHHHIRAQGGSVEGGKKGSKWRKQLQICMATQTQV 66 Query: 273 DLLRPDPETGRLRTLLXVDIFGAIRSLA 356 +L D E GRLR L +FG I L+ Sbjct: 67 ELY--DVEEGRLRRLFTRTVFGTITGLS 92
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)| Length = 1669 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = +3 Query: 171 VCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDP--ETGRLRTLLXVDIFGAI 344 V A I FS + ++SN ++ +I + G +DL PD + LR LL F + Sbjct: 177 VLASIPGFSVKPRRRSNKKLTTAAQIEQTKDGKIDLETPDSILASTNLRALLNKQTFSLL 236 Query: 345 RSLAQF 362 L Q+ Sbjct: 237 PPLYQY 242
>NFIP2_MOUSE (Q91ZP6) NEDD4 family-interacting protein 2 (NEDD4 WW| domain-binding protein 5A) (Fragment) Length = 311 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Frame = +3 Query: 159 ATGAVCAVIGSFSGRD-----SKKSNAAGSSTQEIAVA-RGGTLDLLRPDPETGRL 308 ATG+ A G GR + AA +ST+E A R G +PDPE GR+ Sbjct: 16 ATGSEAAPPGDLGGRTRGGGRGSAAAAATTSTREAEGAERRGDTPARKPDPEAGRM 71
>PPCK_BRAJA (Q89BK7) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 538 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Frame = +3 Query: 117 GVGAMYLYSLTLQRAT----GAVCAVIGSFSGRDSKKSNAAGSSTQE 245 G +Y YSL+ A GA+CA G F+GR K +T + Sbjct: 29 GAPQLYQYSLSAGEAVLSADGALCADTGEFTGRSPKDKFTVRDATTD 75
>ARP6_ASPFU (Q4W9M3) Actin-like protein arp6| Length = 468 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +3 Query: 168 AVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 305 AVC V +F+G D +++ A G T+D + PDP TG+ Sbjct: 260 AVCFVSNNFAG-DLEQTWQGNRKRGLTDAAEGITVDYVLPDPNTGK 304
>GCDA_ACIFE (Q06700) Glutaconyl-CoA decarboxylase alpha subunit (EC 4.1.1.70)| (Carboxyltransferase) Length = 587 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 138 YSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT 269 + +TL++ T A V+G G D+ + + G++ EIAV G T Sbjct: 448 FEITLRKGTAAAHYVLGGPQGNDT-NAFSIGTAATEIAVMNGET 490
>DHA1_STAAW (Q8NWQ3) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 201 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 287 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAS (Q6G9C3) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 201 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 287 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAR (Q6GGW9) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 201 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 287 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAN (P99151) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 201 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 287 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAM (P63478) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 201 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 287 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAC (Q5HFY4) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 201 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 287 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,767,115 Number of Sequences: 219361 Number of extensions: 296672 Number of successful extensions: 899 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 884 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 889 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
