ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14h06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464062.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3705 Score = 165 bits (83), Expect = 1e-37 Identities = 118/130 (90%) Strand = Plus / Plus Query: 234 tccacgcaggagatcgccgtcgcccgcggcggcacgctcgacctcctccgcccggacccg 293 |||||||||||||||||||| ||||| ||| ||| ||||| ||||||||||| |||||| Sbjct: 121 tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg 180 Query: 294 gagacgggccgactccgcacgctcctcntcgtcgacatcttcggcgccatccgctcgctc 353 ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 181 gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 240 Query: 354 gcccagttcc 363 |||||||||| Sbjct: 241 gcccagttcc 250 Score = 155 bits (78), Expect = 1e-34 Identities = 87/90 (96%) Strand = Plus / Plus Query: 129 atgtacctctacagcctgacgctgcagagggcgacgggcgccgtgtgcgccgtcatcggc 188 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 1 atgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatcggc 60 Query: 189 agcttcagcggccgcgactcgaagaagtcg 218 ||||||||||| |||||||||||||||||| Sbjct: 61 agcttcagcgggcgcgactcgaagaagtcg 90
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 165 bits (83), Expect = 1e-37 Identities = 118/130 (90%) Strand = Plus / Plus Query: 234 tccacgcaggagatcgccgtcgcccgcggcggcacgctcgacctcctccgcccggacccg 293 |||||||||||||||||||| ||||| ||| ||| ||||| ||||||||||| |||||| Sbjct: 1978685 tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg 1978744 Query: 294 gagacgggccgactccgcacgctcctcntcgtcgacatcttcggcgccatccgctcgctc 353 ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 1978745 gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 1978804 Query: 354 gcccagttcc 363 |||||||||| Sbjct: 1978805 gcccagttcc 1978814 Score = 161 bits (81), Expect = 2e-36 Identities = 90/93 (96%) Strand = Plus / Plus Query: 126 gccatgtacctctacagcctgacgctgcagagggcgacgggcgccgtgtgcgccgtcatc 185 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 1978562 gccatgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatc 1978621 Query: 186 ggcagcttcagcggccgcgactcgaagaagtcg 218 |||||||||||||| |||||||||||||||||| Sbjct: 1978622 ggcagcttcagcgggcgcgactcgaagaagtcg 1978654 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 13389802 agatcgccgtcgcccgcggc 13389821
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 165 bits (83), Expect = 1e-37 Identities = 118/130 (90%) Strand = Plus / Plus Query: 234 tccacgcaggagatcgccgtcgcccgcggcggcacgctcgacctcctccgcccggacccg 293 |||||||||||||||||||| ||||| ||| ||| ||||| ||||||||||| |||||| Sbjct: 28893 tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg 28952 Query: 294 gagacgggccgactccgcacgctcctcntcgtcgacatcttcggcgccatccgctcgctc 353 ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 28953 gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 29012 Query: 354 gcccagttcc 363 |||||||||| Sbjct: 29013 gcccagttcc 29022 Score = 161 bits (81), Expect = 2e-36 Identities = 90/93 (96%) Strand = Plus / Plus Query: 126 gccatgtacctctacagcctgacgctgcagagggcgacgggcgccgtgtgcgccgtcatc 185 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 28770 gccatgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatc 28829 Query: 186 ggcagcttcagcggccgcgactcgaagaagtcg 218 |||||||||||||| |||||||||||||||||| Sbjct: 28830 ggcagcttcagcgggcgcgactcgaagaagtcg 28862
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13 Length = 144624 Score = 165 bits (83), Expect = 1e-37 Identities = 118/130 (90%) Strand = Plus / Plus Query: 234 tccacgcaggagatcgccgtcgcccgcggcggcacgctcgacctcctccgcccggacccg 293 |||||||||||||||||||| ||||| ||| ||| ||||| ||||||||||| |||||| Sbjct: 118246 tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg 118305 Query: 294 gagacgggccgactccgcacgctcctcntcgtcgacatcttcggcgccatccgctcgctc 353 ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 118306 gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 118365 Query: 354 gcccagttcc 363 |||||||||| Sbjct: 118366 gcccagttcc 118375 Score = 161 bits (81), Expect = 2e-36 Identities = 90/93 (96%) Strand = Plus / Plus Query: 126 gccatgtacctctacagcctgacgctgcagagggcgacgggcgccgtgtgcgccgtcatc 185 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 118123 gccatgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatc 118182 Query: 186 ggcagcttcagcggccgcgactcgaagaagtcg 218 |||||||||||||| |||||||||||||||||| Sbjct: 118183 ggcagcttcagcgggcgcgactcgaagaagtcg 118215
>ref|XM_751791.1| Ustilago maydis 521 hypothetical protein (UM00737.1) partial mRNA Length = 3666 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 128 catgtacctctacagcctgacgctgcag 155 |||||||||||||| ||||||||||||| Sbjct: 9 catgtacctctacaacctgacgctgcag 36
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggcggc 266 ||||||||||||||||||||||| Sbjct: 22573165 agatcgccgtcgcccgcggcggc 22573143
>dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0690E03 Length = 139924 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggcggc 266 ||||||||||||||||||||||| Sbjct: 46666 agatcgccgtcgcccgcggcggc 46644
>ref|XM_469430.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 137 ctacagcctgacgctgcagagg 158 |||||||||||||||||||||| Sbjct: 668 ctacagcctgacgctgcagagg 689
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 137 ctacagcctgacgctgcagagg 158 |||||||||||||||||||||| Sbjct: 61172 ctacagcctgacgctgcagagg 61193
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 137 ctacagcctgacgctgcagagg 158 |||||||||||||||||||||| Sbjct: 27925444 ctacagcctgacgctgcagagg 27925465 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 30934666 agatcgccgtcgcccgcggc 30934647
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 ctacagcctgacgctgcagagg 158 |||||||||||||||||||||| Sbjct: 99582 ctacagcctgacgctgcagagg 99561
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 137 ctacagcctgacgctgcagagg 158 |||||||||||||||||||||| Sbjct: 28016768 ctacagcctgacgctgcagagg 28016789 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 31025189 agatcgccgtcgcccgcggc 31025170
>dbj|AK108055.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H10, full insert sequence Length = 1706 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 ctacagcctgacgctgcagagg 158 |||||||||||||||||||||| Sbjct: 767 ctacagcctgacgctgcagagg 746
>dbj|AK106157.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A06, full insert sequence Length = 1573 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 cgtcgcccgcggcggcacgctc 272 |||||||||||||||||||||| Sbjct: 553 cgtcgcccgcggcggcacgctc 574
>dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E07, full insert sequence Length = 1586 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 137 ctacagcctgacgctgcagagg 158 |||||||||||||||||||||| Sbjct: 670 ctacagcctgacgctgcagagg 691
>ref|XM_469821.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2280 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 1718 agatcgccgtcgcccgcggc 1699
>ref|XM_478822.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1782 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tcgcccgcggcggcacgctc 272 |||||||||||||||||||| Sbjct: 1106 tcgcccgcggcggcacgctc 1125
>ref|XM_473342.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2655 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 2318 agatcgccgtcgcccgcggc 2299
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 133019 agatcgccgtcgcccgcggc 133038
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06, complete sequence Length = 143130 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 21405 agatcgccgtcgcccgcggc 21424
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggcggca 267 |||||||||||||||||| ||||| Sbjct: 1053047 agatcgccgtcgcccgcgacggca 1053024
>ref|XM_366244.1| Magnaporthe grisea 70-15 predicted protein (MG10463.4) partial mRNA Length = 561 Score = 40.1 bits (20), Expect = 4.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 311 cacgctcctcntcgtcgacatcttcgg 337 |||||||||| ||||||||||||||| Sbjct: 147 cacgctcctcggcgtcgacatcttcgg 173
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggcggca 267 |||||||||||||||||| ||||| Sbjct: 2512714 agatcgccgtcgcccgcgacggca 2512737
>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09, complete sequence Length = 156776 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 150960 agatcgccgtcgcccgcggc 150979
>gb|AC135919.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0014F09, complete sequence Length = 151345 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 46601 agatcgccgtcgcccgcggc 46620
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 8424 agatcgccgtcgcccgcggc 8443
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 161398 agatcgccgtcgcccgcggc 161417
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggcggca 267 |||||||||||||||||| ||||| Sbjct: 1869936 agatcgccgtcgcccgcgacggca 1869913
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 cgcccgcggcggcacgctcgacct 277 |||||||||||||| ||||||||| Sbjct: 261102 cgcccgcggcggcaagctcgacct 261125
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cgccgtgtgcgccgtcatcg 186 |||||||||||||||||||| Sbjct: 76674 cgccgtgtgcgccgtcatcg 76655
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06, complete sequence Length = 174570 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 142418 agatcgccgtcgcccgcggc 142437
>gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence Length = 169553 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 gccgccgggtcctccacgcaggag 245 ||||||||||||||| |||||||| Sbjct: 3302 gccgccgggtcctccccgcaggag 3325
>gb|AE012399.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 307 of 460 of the complete genome Length = 12752 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 326 cgacatcttcggcgccatccgctcgctc 353 |||||||||| ||||| ||||||||||| Sbjct: 8798 cgacatcttctgcgccttccgctcgctc 8825
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tcgccgtcgcccgcggcggc 266 |||||||||||||||||||| Sbjct: 16268 tcgccgtcgcccgcggcggc 16287
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 326 cgacatcttcggcgccatccgctcgctc 353 |||||||||| ||||| ||||||||||| Sbjct: 1522280 cgacatcttctgcgccttccgctcgctc 1522253
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gcagagggcgacgggcgccg 171 |||||||||||||||||||| Sbjct: 96590 gcagagggcgacgggcgccg 96609
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 26921358 agatcgccgtcgcccgcggc 26921377
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tcgcccgcggcggcacgctc 272 |||||||||||||||||||| Sbjct: 23221554 tcgcccgcggcggcacgctc 23221535 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 19165166 agatcgccgtcgcccgcggc 19165185 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 19121086 agatcgccgtcgcccgcggc 19121105 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 18888155 agatcgccgtcgcccgcggc 18888136
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 26536492 agatcgccgtcgcccgcggc 26536473 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 caggagatcgccgtcgcccgcggcggca 267 ||||||||||||| |||| ||||||||| Sbjct: 24182938 caggagatcgccggcgccagcggcggca 24182911 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 12087613 agatcgccgtcgcccgcggc 12087632
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 16808909 agatcgccgtcgcccgcggc 16808928 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 11825320 agatcgccgtcgcccgcggc 11825339
>gb|AF298586.1|AF298586 Pseudorabies virus Ea early protein EPO gene, complete cds Length = 1233 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gcagagggcgacgggcgccg 171 |||||||||||||||||||| Sbjct: 1124 gcagagggcgacgggcgccg 1105
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 cgcccgcggcggcacgctcgacct 277 ||||||||||||||||| |||||| Sbjct: 2189032 cgcccgcggcggcacgcgcgacct 2189009
>dbj|AP005968.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1156C07 Length = 182153 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 136476 agatcgccgtcgcccgcggc 136495
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468A12 Length = 143018 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 30402 agatcgccgtcgcccgcggc 30421
>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0709F06 Length = 170964 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 148531 agatcgccgtcgcccgcggc 148512
>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0460H04 Length = 166490 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 70145 agatcgccgtcgcccgcggc 70126
>dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0691E09 Length = 149859 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 caggagatcgccgtcgcccgcggcggca 267 ||||||||||||| |||| ||||||||| Sbjct: 13027 caggagatcgccggcgccagcggcggca 13000
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 caggagatcgccgtcgcccgcggcggca 267 ||||||||||||| |||| ||||||||| Sbjct: 116396 caggagatcgccggcgccagcggcggca 116369
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 88561 agatcgccgtcgcccgcggc 88580 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 44481 agatcgccgtcgcccgcggc 44500
>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1562_B11 Length = 112144 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tcgcccgcggcggcacgctc 272 |||||||||||||||||||| Sbjct: 84468 tcgcccgcggcggcacgctc 84449
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 115053 agatcgccgtcgcccgcggc 115072
>dbj|AK119909.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A10, full insert sequence Length = 1892 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 caggagatcgccgtcgcccgcggcggca 267 ||||||||||||| |||| ||||||||| Sbjct: 614 caggagatcgccggcgccagcggcggca 641
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tcgcccgcggcggcacgctc 272 |||||||||||||||||||| Sbjct: 165738 tcgcccgcggcggcacgctc 165719
>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1112_F06 Length = 104419 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 agatcgccgtcgcccgcggc 263 |||||||||||||||||||| Sbjct: 88341 agatcgccgtcgcccgcggc 88322
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 245 gatcgccgtcgcccgcggcggcacgctcgacc 276 |||| ||||| |||| |||||||||||||||| Sbjct: 127105 gatctccgtctcccgtggcggcacgctcgacc 127136
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 245 gatcgccgtcgcccgcggcggcacgctcgacc 276 |||| ||||| |||| |||||||||||||||| Sbjct: 127105 gatctccgtctcccgtggcggcacgctcgacc 127136
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 322 tcgtcgacatcttcggcgccatccgctc 349 ||||||||||| ||||||||| |||||| Sbjct: 383826 tcgtcgacatcgtcggcgccacccgctc 383799
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cgcaggagatcgccgtcgcc 257 |||||||||||||||||||| Sbjct: 6813233 cgcaggagatcgccgtcgcc 6813214
>gb|DQ289493.1| Synthetic construct EpoC (epoC) gene, complete cds Length = 5622 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 acgcaggagatcgccgtcgcccgc 260 |||||| ||||||||||||||||| Sbjct: 5124 acgcagaagatcgccgtcgcccgc 5101
>gb|U27486.1|SHU27486 Suid herpesvirus 1 early protein 0 EP0 mRNA, partial cds Length = 480 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gcagagggcgacgggcgccg 171 |||||||||||||||||||| Sbjct: 131 gcagagggcgacgggcgccg 112
>gb|M57505.1|SH1LLT Pseudorabies virus ORF1, ORF2, and ORF3 mRNA, complete cds Length = 8438 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gcagagggcgacgggcgccg 171 |||||||||||||||||||| Sbjct: 512 gcagagggcgacgggcgccg 531
>gb|M57504.1|SH1EPO Pseudorabies virus EPO mRNA, complete cds Length = 1845 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gcagagggcgacgggcgccg 171 |||||||||||||||||||| Sbjct: 1334 gcagagggcgacgggcgccg 1315 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,844,127 Number of Sequences: 3902068 Number of extensions: 1844127 Number of successful extensions: 39939 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38849 Number of HSP's gapped (non-prelim): 1090 length of query: 363 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 341 effective length of database: 17,147,199,772 effective search space: 5847195122252 effective search space used: 5847195122252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
