ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14h03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 6e-12 Identities = 69/79 (87%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 5402574 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 5402633 Query: 352 gcgctgggccgatggcgca 370 |||||||| |||||||||| Sbjct: 5402634 gcgctggggcgatggcgca 5402652 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 4 tcccttccctccctcttccccgcctcgct 32 ||||||||| |||||||||||||||||| Sbjct: 9103276 tcccttcccctcctcttccccgcctcgct 9103304
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 79.8 bits (40), Expect = 6e-12 Identities = 69/79 (87%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 108742 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 108801 Query: 352 gcgctgggccgatggcgca 370 |||||||| |||||||||| Sbjct: 108802 gcgctggggcgatggcgca 108820
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 6e-12 Identities = 69/79 (87%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 5401789 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 5401848 Query: 352 gcgctgggccgatggcgca 370 |||||||| |||||||||| Sbjct: 5401849 gcgctggggcgatggcgca 5401867 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 4 tcccttccctccctcttccccgcctcgct 32 ||||||||| |||||||||||||||||| Sbjct: 9101109 tcccttcccctcctcttccccgcctcgct 9101137
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 79.8 bits (40), Expect = 6e-12 Identities = 69/79 (87%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 132356 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 132415 Query: 352 gcgctgggccgatggcgca 370 |||||||| |||||||||| Sbjct: 132416 gcgctggggcgatggcgca 132434
>dbj|AK121250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101G05, full insert sequence Length = 3548 Score = 79.8 bits (40), Expect = 6e-12 Identities = 69/79 (87%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 63 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 122 Query: 352 gcgctgggccgatggcgca 370 |||||||| |||||||||| Sbjct: 123 gcgctggggcgatggcgca 141
>dbj|AK100415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M18, full insert sequence Length = 3726 Score = 79.8 bits (40), Expect = 6e-12 Identities = 69/79 (87%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||||| || ||||| ||||| || || ||| | ||||||||||| |||||| Sbjct: 381 atggagagctacctgaaggagaatttcggcggggtgaaggcgaagcactcgtcggacgag 440 Query: 352 gcgctgggccgatggcgca 370 |||||||| |||||||||| Sbjct: 441 gcgctggggcgatggcgca 459
>ref|NM_102542.1| Arabidopsis thaliana ACA1; calmodulin binding AT1G27770 (ACA1) transcript variant AT1G27770.2 mRNA, complete cds Length = 3262 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 352 gcg 354 ||| Sbjct: 208 gcg 210
>ref|NM_179385.1| Arabidopsis thaliana ACA1; calcium-transporting ATPase/ calmodulin binding AT1G27770 (ACA1) transcript variant AT1G27770.1 mRNA, complete cds Length = 3484 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 352 gcg 354 ||| Sbjct: 208 gcg 210
>emb|X69941.1|CHATACA1B A.thaliana chloroplast ACA1 mRNA encoding envelope Ca2+-ATPase Length = 3262 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 352 gcg 354 ||| Sbjct: 208 gcg 210
>emb|X69940.1|CHATACA1A A.thaliana chloroplast ACA1 mRNA encoding envelope Ca2+-ATPase Length = 4667 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 367 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 426 Query: 352 gcg 354 ||| Sbjct: 427 gcg 429
>gb|AC079280.4|AC079280 Arabidopsis thaliana chromosome 1 BAC F28L5 genomic sequence, complete sequence Length = 48404 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Minus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 5065 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 5006 Query: 352 gcg 354 ||| Sbjct: 5005 gcg 5003
>gb|AC012375.3|AC012375 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence Length = 106753 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Minus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 87993 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 87934 Query: 352 gcg 354 ||| Sbjct: 87933 gcg 87931
>dbj|D13984.1|ATHDCECAA Arabidopsis thaliana ACA1 gene for chloroplast envelope Ca2+-ATPase, complete cds Length = 4667 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 367 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 426 Query: 352 gcg 354 ||| Sbjct: 427 gcg 429
>dbj|D13983.1|ATHRCECAA Arabidopsis thaliana mRNA for chloroplast envelope Ca2+-ATPase, complete cds Length = 3262 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 352 gcg 354 ||| Sbjct: 208 gcg 210
>gb|L08469.1|ATHARAB2TH Arabidopsis thaliana envelope Ca2+-ATPase (PEA1) gene, chloroplast gene encoding chloroplast protein, complete cds Length = 4888 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 366 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 425 Query: 352 gcg 354 ||| Sbjct: 426 gcg 428
>gb|L08468.1|ATHARAB1TH Arabidopsis thaliana envelope Ca2+-ATPase (PEA1) mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 3484 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/63 (84%) Strand = Plus / Plus Query: 292 atggagagctacctcaacgagaacttcggnggcgtcaagcccaagcactcgtccgacgag 351 |||||||||||| | ||||| |||||||| | || ||||| ||| |||||||||| ||| Sbjct: 148 atggagagctacttgaacgaaaacttcggcgatgtgaagccgaagaactcgtccgatgag 207 Query: 352 gcg 354 ||| Sbjct: 208 gcg 210
>ref|XM_365275.1| Magnaporthe grisea 70-15 hypothetical protein (MG01977.4) partial mRNA Length = 1536 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Plus Query: 323 gcgtcaagcccaagcactcgtccgacg 349 ||||||||||||||||| ||||||||| Sbjct: 317 gcgtcaagcccaagcacacgtccgacg 343
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Plus Query: 284 cgcccgccatggagagctacctcaacg 310 ||||||||| ||||||||||||||||| Sbjct: 25610471 cgcccgccagggagagctacctcaacg 25610497
>gb|AC012361.10| Homo sapiens BAC clone RP11-348P18 from 2, complete sequence Length = 207184 Score = 46.1 bits (23), Expect = 0.082 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2 attcccttccctccctcttcccc 24 ||||||||||||||||||||||| Sbjct: 146237 attcccttccctccctcttcccc 146259
>dbj|AK121511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023O13, full insert sequence Length = 2610 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Plus Query: 284 cgcccgccatggagagctacctcaacg 310 ||||||||| ||||||||||||||||| Sbjct: 380 cgcccgccagggagagctacctcaacg 406
>dbj|AK065165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C11, full insert sequence Length = 2692 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Plus Query: 284 cgcccgccatggagagctacctcaacg 310 ||||||||| ||||||||||||||||| Sbjct: 304 cgcccgccagggagagctacctcaacg 330
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Plus Query: 284 cgcccgccatggagagctacctcaacg 310 ||||||||| ||||||||||||||||| Sbjct: 25538647 cgcccgccagggagagctacctcaacg 25538673
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Minus Query: 284 cgcccgccatggagagctacctcaacg 310 ||||||||| ||||||||||||||||| Sbjct: 63247 cgcccgccagggagagctacctcaacg 63221
>emb|AL441927.10| Human DNA sequence from clone RP1-294P19 on chromosome 6, complete sequence Length = 67605 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Plus Query: 252 ggagaggagggacggcaggagagcagcagg 281 ||||| |||||| ||||||||||||||||| Sbjct: 37667 ggagatgagggagggcaggagagcagcagg 37696
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 agagcagcagggacgcccgcca 292 |||||||||||||||||||||| Sbjct: 1341677 agagcagcagggacgcccgcca 1341656
>gb|BC019641.1| Mus musculus B-cell CLL/lymphoma 9, mRNA (cDNA clone IMAGE:3978840), complete cds Length = 2568 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 2431 ttcccttccctccctcttccc 2451
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 cttccctccctcttccccgcc 27 ||||||||||||||||||||| Sbjct: 1282887 cttccctccctcttccccgcc 1282867
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 295 gagagctacctcaacgagaacttcg 319 |||||||||||||||||| |||||| Sbjct: 88281 gagagctacctcaacgagtacttcg 88305
>gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chromosome 4, complete sequence Length = 166748 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 37580 ttcccttccctccctcttccc 37560
>gb|AC116593.4| Mus musculus BAC clone RP24-91C7 from chromosome 8, complete sequence Length = 174603 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 tcccttccctccctcttcccc 24 ||||||||||||||||||||| Sbjct: 104973 tcccttccctccctcttcccc 104953
>ref|XM_566924.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNA04840) partial mRNA Length = 1284 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 cttccctccctcttccccgcc 27 ||||||||||||||||||||| Sbjct: 890 cttccctccctcttccccgcc 910
>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete sequence Length = 170885 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 9717 ttcccttccctccctcttccc 9737
>gb|AC102568.8| Mus musculus chromosome 1, clone RP23-224O10, complete sequence Length = 239053 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tcccttccctccctcttcccc 24 ||||||||||||||||||||| Sbjct: 132693 tcccttccctccctcttcccc 132713
>emb|AL513343.22| Human DNA sequence from clone RP11-90O23 on chromosome 1 Contains the 5' end of the ATP2B4 gene for ATPase Ca++ transporting plasma membrane 4 and a TGF beta-inducible nuclear protein 1 (TINP1) pseudogene, complete sequence Length = 147676 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 79228 ttcccttccctccctcttccc 79208
>emb|AL049757.14|HSDJ47A17 Human DNA sequence from clone RP1-47A17 on chromosome 22q13.2-13.33, complete sequence Length = 105104 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 ggtggagaggagggacggcag 269 ||||||||||||||||||||| Sbjct: 67560 ggtggagaggagggacggcag 67540
>dbj|AK147659.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1102K16 product:B-cell CLL/lymphoma 9, full insert sequence Length = 6103 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 5984 ttcccttccctccctcttccc 6004
>dbj|AK020724.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330041G23 product:B-cell CLL/lymphoma 9, full insert sequence Length = 2089 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 1977 ttcccttccctccctcttccc 1997
>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06, complete sequence Length = 119910 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 4 tcccttccctccctcttccccgcctcgct 32 ||||||||| |||||||||||||||||| Sbjct: 46456 tcccttcccctcctcttccccgcctcgct 46484
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ggagttggtggagaggaggga 263 ||||||||||||||||||||| Sbjct: 4977644 ggagttggtggagaggaggga 4977624
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 295 gagagctacctcaacgagaacttcg 319 |||||||||||||||||| |||||| Sbjct: 24202043 gagagctacctcaacgagtacttcg 24202067
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ggagttggtggagaggaggga 263 ||||||||||||||||||||| Sbjct: 19333 ggagttggtggagaggaggga 19313
>gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complete sequence Length = 203896 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 98193 ttcccttccctccctcttccc 98213
>gb|AC132589.4| Mus musculus BAC clone RP24-258M24 from 1, complete sequence Length = 168097 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 147276 ttcccttccctccctcttccc 147296
>dbj|AB232500.1| Larix kaempferi chloroplast chlB gene for light-independent protochlorophyllide oxidoreductase subunitB, partial cds Length = 1746 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttccc 23 ||||||||||||||||||||| Sbjct: 63 ttcccttccctccctcttccc 83
>gb|AC159317.3| Mus musculus BAC clone RP23-76I20 from chromosome 16, complete sequence Length = 224160 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 52084 cccttccctccctcttcccc 52065
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 277943 cccttccctccctcttcccc 277962
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttccccgc 26 |||||||| ||||||||||||||| Sbjct: 48146 ttcccttcactccctcttccccgc 48169
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 tcaagcccaagcactcgtcc 345 |||||||||||||||||||| Sbjct: 1119396 tcaagcccaagcactcgtcc 1119377
>gb|AC131059.6| Mus musculus chromosome 1, clone RP24-108K12, complete sequence Length = 189961 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tcccttccctccctcttccc 23 |||||||||||||||||||| Sbjct: 26724 tcccttccctccctcttccc 26743
>gb|AC126600.6| Mus musculus chromosome 1, clone RP23-145J9, complete sequence Length = 219130 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccttccctccctcttccc 23 |||||||||||||||||||| Sbjct: 34408 tcccttccctccctcttccc 34389
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gaactcgccaccttccatga 74 |||||||||||||||||||| Sbjct: 142029 gaactcgccaccttccatga 142010
>gb|AC124749.5| Mus musculus BAC clone RP23-262G23 from chromosome 5, complete sequence Length = 209986 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 203860 cccttccctccctcttcccc 203879
>gb|AC137154.2| Mus musculus BAC clone RP24-572L22 from chromosome 5, complete sequence Length = 173460 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 25525 cccttccctccctcttcccc 25544
>ref|XM_981750.1| PREDICTED: Mus musculus hypothetical protein LOC544864 (LOC544864), mRNA Length = 3627 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtctgaggagccgcgtgct 229 |||||||||||||||||||| Sbjct: 622 ggtctgaggagccgcgtgct 603
>ref|XM_974939.1| PREDICTED: Mus musculus hypothetical protein LOC544864 (LOC544864), mRNA Length = 3627 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggtctgaggagccgcgtgct 229 |||||||||||||||||||| Sbjct: 622 ggtctgaggagccgcgtgct 603
>emb|AL773599.11| Mouse DNA sequence from clone RP23-326I8 on chromosome 4, complete sequence Length = 46151 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttcc 22 |||||||||||||||||||| Sbjct: 35338 ttcccttccctccctcttcc 35357
>ref|XM_571340.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNF03820) partial mRNA Length = 2379 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 tcaagcccaagcactcgtcc 345 |||||||||||||||||||| Sbjct: 1537 tcaagcccaagcactcgtcc 1556
>emb|AL590732.7| Human DNA sequence from clone RP11-14I4 on chromosome 6 Contains the 5' end of a novel gene and a nucleophosmin (NPM1) pseudogene, complete sequence Length = 71092 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 attcccttccctccctcttc 21 |||||||||||||||||||| Sbjct: 10798 attcccttccctccctcttc 10779
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 cgtccgacgaggcgctgggc 360 |||||||||||||||||||| Sbjct: 2600865 cgtccgacgaggcgctgggc 2600846
>emb|CR547127.14| Mouse DNA sequence from clone CH25-592M6 on chromosome X, complete sequence Length = 72790 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gacgcccgccatggagagct 301 |||||||||||||||||||| Sbjct: 69599 gacgcccgccatggagagct 69580
>gb|AC105933.2| Homo sapiens chromosome 3 clone RP11-454I5, complete sequence Length = 175370 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 aattcccttccctccctcttcccc 24 ||||||||||||||||||| |||| Sbjct: 139996 aattcccttccctccctctccccc 140019
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ttcccttccctccctcttccccgc 26 |||||||| ||||||||||||||| Sbjct: 30551 ttcccttcactccctcttccccgc 30528
>emb|CR548624.2| Mouse DNA sequence from clone CH25-423E5 on chromosome X, complete sequence Length = 30460 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gacgcccgccatggagagct 301 |||||||||||||||||||| Sbjct: 27304 gacgcccgccatggagagct 27285
>dbj|AK172326.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830201G14 product:E3 ligase for inhibin receptor homolog [Homo sapiens], full insert sequence Length = 2282 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggtctgaggagccgcgtgct 229 |||||||||||||||||||| Sbjct: 86 ggtctgaggagccgcgtgct 105
>gb|AC010290.7| Homo sapiens chromosome 5 clone CTB-125B20, complete sequence Length = 238472 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 248 tggtggagaggagggacggcaggagagc 275 |||||||||| |||||||||||||||| Sbjct: 19126 tggtggagagaggggacggcaggagagc 19099
>dbj|AK049040.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230094G20 product:unclassifiable, full insert sequence Length = 1973 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ttcccttccctccctcttccccgc 26 |||||||| ||||||||||||||| Sbjct: 1917 ttcccttcactccctcttccccgc 1894
>gb|AC157213.2| Mus musculus BAC clone RP23-157N5 from chromosome 12, complete sequence Length = 211304 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggtctgaggagccgcgtgct 229 |||||||||||||||||||| Sbjct: 133485 ggtctgaggagccgcgtgct 133504
>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198488 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tcccttccctccctcttccc 23 |||||||||||||||||||| Sbjct: 176236 tcccttccctccctcttccc 176217
>gb|AC099053.2| Homo sapiens chromosome 3 clone RP11-464H2, complete sequence Length = 200069 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 aattcccttccctccctcttcccc 24 ||||||||||||||||||| |||| Sbjct: 10207 aattcccttccctccctctccccc 10230
>gb|AC127373.3| Mus musculus BAC clone RP23-42M8 from 6, complete sequence Length = 233833 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 8397 cccttccctccctcttcccc 8378
>gb|AC138306.4| Mus musculus BAC clone RP24-240E9 from 16, complete sequence Length = 170196 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 21963 cccttccctccctcttcccc 21982
>dbj|AP003733.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-810P12, complete sequence Length = 166867 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ttcccttccctccctcttcc 22 |||||||||||||||||||| Sbjct: 98564 ttcccttccctccctcttcc 98583
>dbj|AP003327.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-507F16, complete sequence Length = 188040 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 248 tggtggagaggagggacggcaggagagc 275 |||||||||| |||||||||||||||| Sbjct: 127807 tggtggagagaggggacggcaggagagc 127780
>gb|AC117808.8| Mus musculus chromosome 1, clone RP24-570C24, complete sequence Length = 189713 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 163444 cccttccctccctcttcccc 163463
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 agaataccgccacttccatg 114 |||||||||||||||||||| Sbjct: 1517330 agaataccgccacttccatg 1517349
>emb|AL954824.2| Mouse DNA sequence from clone RP23-326I8 on chromosome 4, complete sequence Length = 46151 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ttcccttccctccctcttcc 22 |||||||||||||||||||| Sbjct: 10814 ttcccttccctccctcttcc 10795
>gb|AC173480.1| Mus musculus BAC clone RP23-422D12 from chromosome 6, complete sequence Length = 185966 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 119921 cccttccctccctcttcccc 119902
>gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, complete sequence Length = 206926 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cccttccctccctcttcccc 24 |||||||||||||||||||| Sbjct: 29605 cccttccctccctcttcccc 29624 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,486,453 Number of Sequences: 3902068 Number of extensions: 2486453 Number of successful extensions: 58535 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58216 Number of HSP's gapped (non-prelim): 319 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
