>ref|XM_480473.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2697

 Score =  129 bits (65), Expect = 7e-27
 Identities = 76/80 (95%)
 Strand = Plus / Plus

                                                                       
Query: 286 attttgaccagcctccctaagcccgggggtggtgaatatgggaaatnctacagccttcct 345
           |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 28  attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 87

                               
Query: 346 gcactaaatgatccaaggat 365
           |||||||||||||| |||||
Sbjct: 88  gcactaaatgatcccaggat 107

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  129 bits (65), Expect = 7e-27
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                           
Query: 286     attttgaccagcctccctaagcccgggggtggtgaatatgggaaatnctacagccttcct 345
               |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 5327086 attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 5327027

                                   
Query: 346     gcactaaatgatccaaggat 365
               |||||||||||||| |||||
Sbjct: 5327026 gcactaaatgatcccaggat 5327007

>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0610E02
          Length = 135816

 Score =  129 bits (65), Expect = 7e-27
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                          
Query: 286    attttgaccagcctccctaagcccgggggtggtgaatatgggaaatnctacagccttcct 345
              |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 118674 attttgaccaccctccctaagcctgggggtggtgaatatgggaaattctacagccttcct 118615

                                  
Query: 346    gcactaaatgatccaaggat 365
              |||||||||||||| |||||
Sbjct: 118614 gcactaaatgatcccaggat 118595

>gb|AY104770.1| Zea mays PCO074909 mRNA sequence
          Length = 3628

 Score =  123 bits (62), Expect = 4e-25
 Identities = 109/125 (87%)
 Strand = Plus / Plus

                                                                       
Query: 241 cagcgcaggatggccgcctcaggtactgagcatgcctacagcaatattttgaccagcctc 300
           ||||||||||||||  ||  || ||||| |||||||| ||   ||||| |||||||||||
Sbjct: 318 cagcgcaggatggcaacccaagctactgtgcatgccttcaaggatattctgaccagcctc 377

                                                                       
Query: 301 cctaagcccgggggtggtgaatatgggaaatnctacagccttcctgcactaaatgatcca 360
           |||||||| || |||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct: 378 cctaagcctggaggtggtgaatatggaaagttctacagccttcctgcactaaatgatcca 437

                
Query: 361 aggat 365
           |||||
Sbjct: 438 aggat 442

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 6e-21
 Identities = 90/102 (88%)
 Strand = Plus / Plus

                                                                            
Query: 264      tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 323
                |||| ||||||||| ||  |||||||||  ||||||||| ||||| || |||||||||||
Sbjct: 11279371 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 11279430

                                                          
Query: 324      tgggaaatnctacagccttcctgcactaaatgatccaaggat 365
                |||||| |  ||||||||||||||||||||||||||||||||
Sbjct: 11279431 tgggaagttttacagccttcctgcactaaatgatccaaggat 11279472

>dbj|AP006166.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1435D02
          Length = 131152

 Score =  109 bits (55), Expect = 6e-21
 Identities = 90/102 (88%)
 Strand = Plus / Plus

                                                                         
Query: 264   tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 323
             |||| ||||||||| ||  |||||||||  ||||||||| ||||| || |||||||||||
Sbjct: 94670 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 94729

                                                       
Query: 324   tgggaaatnctacagccttcctgcactaaatgatccaaggat 365
             |||||| |  ||||||||||||||||||||||||||||||||
Sbjct: 94730 tgggaagttttacagccttcctgcactaaatgatccaaggat 94771

>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0042E12
          Length = 164688

 Score =  109 bits (55), Expect = 6e-21
 Identities = 90/102 (88%)
 Strand = Plus / Plus

                                                                          
Query: 264    tactgagcatgcctacagcaatattttgaccagcctccctaagcccgggggtggtgaata 323
              |||| ||||||||| ||  |||||||||  ||||||||| ||||| || |||||||||||
Sbjct: 154193 tactaagcatgccttcaagaatattttggtcagcctcccaaagccaggtggtggtgaata 154252

                                                        
Query: 324    tgggaaatnctacagccttcctgcactaaatgatccaaggat 365
              |||||| |  ||||||||||||||||||||||||||||||||
Sbjct: 154253 tgggaagttttacagccttcctgcactaaatgatccaaggat 154294

>ref|NM_176610.1| Bos taurus milk fat globule-EGF factor 8 protein (MFGE8), mRNA
          Length = 1965

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   ctgctgcctcctccgcccgcc 33
            |||||||||||||||||||||
Sbjct: 1371 ctgctgcctcctccgcccgcc 1391

>emb|CR933541.6| Mouse DNA sequence from clone DN-97M20 on chromosome 11, complete
              sequence
          Length = 176646

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 240    gcagcgcaggatggccgcctcaggt 264
              ||||| |||||||||||||||||||
Sbjct: 135447 gcagcccaggatggccgcctcaggt 135471

>emb|X91895.1|BTPAS67PT B.taurus mRNA for PAS-6 and PAS-7 protein
          Length = 1965

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   ctgctgcctcctccgcccgcc 33
            |||||||||||||||||||||
Sbjct: 1371 ctgctgcctcctccgcccgcc 1391

>emb|AL596185.12| Mouse DNA sequence from clone RP23-172M21 on chromosome 11 Contains the
              5' end of the Centb1 gene for centaurin beta 1, the gene
              for a novel protein similar to protein phosphatase 1
              regulatory (inhibitor) subunit 2 Ppp1r2, a novel gene, the
              Gps2 gene for G protein pathway suppressor 2, the Eif5a
              gene for eukaryotic translation initiation factor 5A, the
              Ybx2 gene for Y box protein 2, the Slc2a4 gene for solute
              carrier family 2 (facilitated glucose transporter) member
              4, a non-muscle cofilin 1 (Cfl1) pseudogene, the Cldn7 gene
              for claudin 7, the Rai12 gene for retinoic acid induced 12,
              the Dullard gene for Dullard homolog (Xenopus laevis)
              (novel NLI interacting factor-like phosphatase), the gene
              for novel PHD-finger protein JUNE1, the Dvl2 gene for
              dishevelled 2 dsh homolog (Drosophila), the Acadvl gene for
              acyl-Coenzyme A dehydrogenase very long chain, the Dlgh4
              gene for discs large homolog 4 (Drosophila), the Asgr1 and
              Asgr2 genes for asialoglycoprotein receptor 1 and 2, a
              ribosomal protein L26 (Rpl26) pseudogene, the 5' end of the
              Mgl2 gene for macrophage galactose N-acetyl-galactosamine
              specific lectin 2 and nine CpG islands, complete sequence
          Length = 248203

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 240    gcagcgcaggatggccgcctcaggt 264
              ||||| |||||||||||||||||||
Sbjct: 142614 gcagcccaggatggccgcctcaggt 142638

>gb|S80643.1| Bos taurus MGP57/53 glycoprotein antigen (MGP57/53) mRNA, partial cds
          Length = 1895

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   ctgctgcctcctccgcccgcc 33
            |||||||||||||||||||||
Sbjct: 1290 ctgctgcctcctccgcccgcc 1310

>gb|BC102354.1| Bos taurus cDNA clone MGC:127309 IMAGE:7949013, complete cds
          Length = 2022

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   ctgctgcctcctccgcccgcc 33
            |||||||||||||||||||||
Sbjct: 1413 ctgctgcctcctccgcccgcc 1433

>dbj|AP000907.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-708L7, complete
              sequence
          Length = 176273

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 195    ggtcaggggcaggggcagcgt 215
              |||||||||||||||||||||
Sbjct: 161004 ggtcaggggcaggggcagcgt 161024

>dbj|AP002007.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-762O23, complete
             sequence
          Length = 168922

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 195   ggtcaggggcaggggcagcgt 215
             |||||||||||||||||||||
Sbjct: 76483 ggtcaggggcaggggcagcgt 76503

>gb|AY207049.1|AY207048S2 Mus musculus postsynaptic density-95 gene, exons 2 through 8 and
            partial cds; alternatively spliced
          Length = 5804

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 240  gcagcgcaggatggccgcctcaggt 264
            ||||| |||||||||||||||||||
Sbjct: 4047 gcagcccaggatggccgcctcaggt 4071

>ref|NM_195831.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015I18.15), mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 ctcgccgtcgtccgccgcgg 196
           ||||||||||||||||||||
Sbjct: 88  ctcgccgtcgtccgccgcgg 107

>gb|BC045871.1| Danio rerio cleavage stimulation factor, 3' pre-RNA, subunit 3, mRNA
            (cDNA clone MGC:56028 IMAGE:3819970), complete cds
          Length = 2632

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    atgaagctgctgcctcctcc 26
            ||||||||||||||||||||
Sbjct: 1972 atgaagctgctgcctcctcc 1991

>ref|NM_007864.1| Mus musculus discs, large homolog 4 (Drosophila) (Dlgh4), mRNA
          Length = 2338

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 gcagcgcaggatggccgcctcagg 263
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393

>gb|AY576992.1| Danio rerio clone RK075A2H04 cleavage stimulation factor, 3' pre-RNA,
            subunit 3, 77kDa mRNA, complete cds
          Length = 2647

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    atgaagctgctgcctcctcc 26
            ||||||||||||||||||||
Sbjct: 1979 atgaagctgctgcctcctcc 1998

>ref|NM_214719.1| Danio rerio cleavage stimulation factor, 3' pre-RNA, subunit 3
            (cstf3), transcript variant 2, mRNA
          Length = 2647

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    atgaagctgctgcctcctcc 26
            ||||||||||||||||||||
Sbjct: 1979 atgaagctgctgcctcctcc 1998

>ref|NM_213053.1| Danio rerio cleavage stimulation factor, 3' pre-RNA, subunit 3
            (cstf3), transcript variant 1, mRNA
          Length = 2632

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    atgaagctgctgcctcctcc 26
            ||||||||||||||||||||
Sbjct: 1972 atgaagctgctgcctcctcc 1991

>ref|NM_019621.1| Rattus norvegicus discs, large homolog 4 (Drosophila) (Dlgh4), mRNA
          Length = 3083

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 gcagcgcaggatggccgcctcagg 263
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393

>gb|BC014807.1| Mus musculus discs, large homolog 4 (Drosophila), mRNA (cDNA clone
           MGC:25332 IMAGE:4501403), complete cds
          Length = 3076

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 gcagcgcaggatggccgcctcagg 263
           ||||| ||||||||||||||||||
Sbjct: 364 gcagcccaggatggccgcctcagg 387

>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39776

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   tgccgcccagcggtcccagc 241
             ||||||||||||||||||||
Sbjct: 12471 tgccgcccagcggtcccagc 12452

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    ccagcggtcccagcagcgca 247
              ||||||||||||||||||||
Sbjct: 580878 ccagcggtcccagcagcgca 580897

>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0015I18, from chromosome 10, complete sequence
          Length = 161479

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   ctcgccgtcgtccgccgcgg 196
             ||||||||||||||||||||
Sbjct: 61229 ctcgccgtcgtccgccgcgg 61210

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     ctcgccgtcgtccgccgcgg 196
               ||||||||||||||||||||
Sbjct: 9305188 ctcgccgtcgtccgccgcgg 9305207

>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0011F12, complete sequence
          Length = 122262

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ctcgccgtcgtccgccgcgg 196
             ||||||||||||||||||||
Sbjct: 23031 ctcgccgtcgtccgccgcgg 23050

>ref|XM_579440.1| PREDICTED: Rattus norvegicus hypothetical gene supported by
           NM_019621 (LOC497670), mRNA
          Length = 3070

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 gcagcgcaggatggccgcctcagg 263
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393

>emb|X66474.1|RNSAP90AM R.norvegicus mRNA for guanylate kinase
          Length = 2447

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 gcagcgcaggatggccgcctcagg 263
           ||||| ||||||||||||||||||
Sbjct: 515 gcagcccaggatggccgcctcagg 538

>dbj|D50621.1|MUSPSD95SP Mus musculus mRNA for PSD-95/SAP90A, complete cds
          Length = 2338

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 gcagcgcaggatggccgcctcagg 263
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     gcggtgctcgccgtcgtccg 190
               ||||||||||||||||||||
Sbjct: 1447061 gcggtgctcgccgtcgtccg 1447042

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     ctcgccgtcgtccgccgcgg 196
               ||||||||||||||||||||
Sbjct: 9310327 ctcgccgtcgtccgccgcgg 9310346

>gb|M96853.1|RATPSD95A Rat postsynaptic density protein (PSD-95), homologue of discs-large
           tumor supressor protein mRNA, complete cds
          Length = 3083

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 gcagcgcaggatggccgcctcagg 263
           ||||| ||||||||||||||||||
Sbjct: 370 gcagcccaggatggccgcctcagg 393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,048,860
Number of Sequences: 3902068
Number of extensions: 2048860
Number of successful extensions: 44369
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44194
Number of HSP's gapped (non-prelim): 175
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)