>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 236 NPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIMDRSIGE 352
           NPKAFA  SA +  R   R+A+I Q++LHVP++DR+  E
Sbjct: 32  NPKAFAVASAGRMARQAMRTADISQKKLHVPMVDRTPDE 70

>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1|
          Length = 1183

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +2

Query: 236 NPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIMDRS 343
           N KAFA  +  K  R   RS+++ +R+LHVP++DR+
Sbjct: 27  NAKAFAVAAPGKMARTMQRSSDVNERKLHVPMVDRT 62

>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 14/38 (36%), Positives = 28/38 (73%)
 Frame = +2

Query: 230 RKNPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIMDRS 343
           ++NPKAFA +SA +  R   R+ +++ ++ H+P++DR+
Sbjct: 39  KRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRT 76

>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked nuclear protein)
            (Heterochromatin protein 2) (HP1 alpha-interacting
            protein) (HP1-BP38 protein)
          Length = 2476

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 68   QKPR-EHRLRKTLLTMAPGEAGVEQPRK 148
            +KPR  HRL +  LT++ GE+G E+P K
Sbjct: 1319 KKPRYRHRLLRHKLTLSDGESGEEKPTK 1346

>NPT2B_HUMAN (O95436) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 690

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 247 FCLPFSNKSEA-ATISISGN*TTPSPCANHGSLNW 348
           +C  F+NK++   T+  + N T+PS C   G  NW
Sbjct: 302 WCKTFTNKTQINVTVPSTANCTSPSLCWTDGIQNW 336

>PRIM_PSEAE (Q9I5W0) DNA primase (EC 2.7.7.-)|
          Length = 664

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 127 GFPRSHGEEGFAEAVLAGFLRRRRGMAAGKEESGGRG 17
           GF   H +  F +AV    L +R GM   +EE GGRG
Sbjct: 72  GFVMDHDQLEFPQAVEE--LAKRAGMDVPREERGGRG 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,772,879
Number of Sequences: 219361
Number of extensions: 378709
Number of successful extensions: 1178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)