ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 69 4e-12
2UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 66 2e-11
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 50 1e-06
4UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1 32 0.39
5UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein) 32 0.39
6UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1 30 1.5
7UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1 30 1.9
8UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ R... 29 3.3

>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 39/64 (60%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
 Frame = +2

Query: 170 MLPRKREIVASEVENQQKKXXXXXXXXX-----XXXXXXXXEIDEDLHSRQLAVYGRETM 334
           MLPRKREIVA EVE+ QKK                      EIDEDLHSRQLAVYGRETM
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60

Query: 335 KRLF 346
           KRLF
Sbjct: 61  KRLF 64



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>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 38/64 (59%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +2

Query: 170 MLPRKREIVASEVENQQKKXXXXXXXXX-----XXXXXXXXEIDEDLHSRQLAVYGRETM 334
           MLPRKREIVA EVE+ QKK                      EIDEDLHSRQLAVYGRETM
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60

Query: 335 KRLF 346
           K LF
Sbjct: 61  KPLF 64



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +2

Query: 278 EIDEDLHSRQLAVYGRETMKRLFA 349
           EIDEDLHSRQLAVYGRETM+RLFA
Sbjct: 45  EIDEDLHSRQLAVYGRETMRRLFA 68



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>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1|
          Length = 1058

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +2

Query: 278 EIDEDLHSRQLAVYGRETMKRL 343
           +IDE L+SRQL V G E MKRL
Sbjct: 49  DIDEGLYSRQLYVLGHEAMKRL 70



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>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)|
          Length = 1058

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +2

Query: 278 EIDEDLHSRQLAVYGRETMKRL 343
           +IDE L+SRQL V G E MKRL
Sbjct: 49  DIDEGLYSRQLYVLGHEAMKRL 70



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>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1|
          Length = 1058

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 278 EIDEDLHSRQLAVYGRETMKRL 343
           +IDE L+SRQL V G E MK L
Sbjct: 49  DIDESLYSRQLYVLGHEAMKML 70



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>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1|
          Length = 1024

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 278 EIDEDLHSRQLAVYGRETMKRL 343
           EIDE L+SRQL V G+E M ++
Sbjct: 13  EIDESLYSRQLYVLGKEAMLKM 34



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>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport|
           protein 3)
          Length = 1012

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 281 IDEDLHSRQLAVYGRETMKRL 343
           IDE L+SRQL V G E MK++
Sbjct: 15  IDEGLYSRQLYVLGHEAMKQM 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.127    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,618,087
Number of Sequences: 219361
Number of extensions: 283797
Number of successful extensions: 1336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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