ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14g02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 115 bits (58), Expect = 1e-22 Identities = 134/160 (83%), Gaps = 12/160 (7%) Strand = Plus / Plus Query: 75 cgctggatctggcgcggcagctcccgccggccgcctactactactgcctgcttttcgcgg 134 ||||||||||| |||||||||||||| ||||||| ||||||| ||||||| ||||| | Sbjct: 82 cgctggatctgacgcggcagctcccggcggccgcgtactact---gcctgctcttcgctg 138 Query: 135 cggcgg---------tcgggctcatcggcggcgtcgcgcactatatgctccctcggaagc 185 || ||| |||||||| ||||||||||||||| ||||||||| || ||||||| Sbjct: 139 cgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagc 198 Query: 186 gggagatcgtcgccagcgaggtcgagaaccagcagaagaa 225 |||||||||||||| ||||||||||| || ||||||||| Sbjct: 199 gggagatcgtcgccggcgaggtcgaggacttgcagaagaa 238 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 ||||||||||||||||| |||||||||||||||||||| || || |||||||| |||||| Sbjct: 306 gagatcgacgaggacctgcacagccgccagctcgccgtctatgggcgcgagaccatgaag 365 Query: 338 cgtctcttcg 347 || ||||||| Sbjct: 366 cgcctcttcg 375
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 103 bits (52), Expect = 4e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 300113 Query: 338 cgtctcttcgcc 349 || ||||||||| Sbjct: 300112 cgcctcttcgcc 300101 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 103 bits (52), Expect = 4e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 300113 Query: 338 cgtctcttcgcc 349 || ||||||||| Sbjct: 300112 cgcctcttcgcc 300101 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 103 bits (52), Expect = 4e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 4821 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 4880 Query: 338 cgtctcttcgcc 349 || ||||||||| Sbjct: 4881 cgcctcttcgcc 4892 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Plus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 4611 ctggatctgacgcggcagctctcgccggctgcct 4644
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 103 bits (52), Expect = 4e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 7490 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 7431 Query: 338 cgtctcttcgcc 349 || ||||||||| Sbjct: 7430 cgcctcttcgcc 7419 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 7700 ctggatctgacgcggcagctctcgccggctgcct 7667
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 95.6 bits (48), Expect = 9e-17 Identities = 66/72 (91%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 317078 Query: 338 cgtctcttcgcc 349 || ||||||||| Sbjct: 317077 cgcctcttcgcc 317066 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 95.6 bits (48), Expect = 9e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 438 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 497 Query: 338 cgtctcttcgcc 349 || ||||||||| Sbjct: 498 cgcctcttcgcc 509 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Plus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 225 ctggatctgacgcggcagctctcgccggctgcct 258
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 95.6 bits (48), Expect = 9e-17 Identities = 66/72 (91%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 317078 Query: 338 cgtctcttcgcc 349 || ||||||||| Sbjct: 317077 cgcctcttcgcc 317066 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 95.6 bits (48), Expect = 9e-17 Identities = 66/72 (91%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 50188 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 50129 Query: 338 cgtctcttcgcc 349 || ||||||||| Sbjct: 50128 cgcctcttcgcc 50117 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 50401 ctggatctgacgcggcagctctcgccggctgcct 50368
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 401 gagatcgacgaggacctgcacagccgccagctcgccgtctatggccgcgagaccatgaag 460 Query: 338 cgtctcttcg 347 | ||||||| Sbjct: 461 ccgctcttcg 470 Score = 89.7 bits (45), Expect = 6e-15 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand = Plus / Plus Query: 141 tcgggctcatcggcggcgtcgcgcactatatgctccctcggaagcgggagatcgtcgcca 200 |||||||| |||||| |||||||| ||||||||| || ||||||||||||||||||||| Sbjct: 250 tcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 308 Query: 201 gcgaggtcgagaaccagcagaagaa 225 ||||||||||| || ||||||||| Sbjct: 309 gcgaggtcgaggacttgcagaagaa 333
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3588 Score = 65.9 bits (33), Expect = 8e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 277 ggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 ||||||||||||||||||||||||| | ||||||||||| ||||| Sbjct: 317 ggagatcgacgaggacctccacagcaggcagctcgccgtgtacgg 361
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 275 gcggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 |||||||||||||||||||| |||||| | ||||||||||| ||||| Sbjct: 10276950 gcggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgg 10276904
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 275 gcggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 |||||||||||||||||||| |||||| | ||||||||||| ||||| Sbjct: 138363 gcggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgg 138317
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 275 gcggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 |||||||||||||||||||| |||||| | ||||||||||| ||||| Sbjct: 10275051 gcggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgg 10275005
>dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full insert sequence Length = 3682 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 275 gcggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 |||||||||||||||||||| |||||| | ||||||||||| ||||| Sbjct: 367 gcggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgg 413
>ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3522 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 ||||||| ||||||||||| |||||| | ||||||||||| ||||| Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgg 374
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 ||||||| ||||||||||| |||||| | ||||||||||| ||||| Sbjct: 29425631 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgg 29425676
>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full insert sequence Length = 3522 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 ||||||| ||||||||||| |||||| | ||||||||||| ||||| Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgg 374
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacgg 321 ||||||| ||||||||||| |||||| | ||||||||||| ||||| Sbjct: 88553 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgg 88598
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 122 ctgcttttcgcggcggcggtcgg 144 ||||||||||||||||||||||| Sbjct: 272756 ctgcttttcgcggcggcggtcgg 272778
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 44.1 bits (22), Expect = 0.30 Identities = 43/50 (86%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctctt 345 ||||| |||||||||||||| || || || ||||| |||| ||||||||| Sbjct: 355 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctt 404
>gb|AY232997.1| Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB (popB), and PopD (popD) genes, complete cds Length = 4231 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 gcgaggtcgagaaccagcagaagaaa 226 |||| ||||||||||||||||||||| Sbjct: 2515 gcgaagtcgagaaccagcagaagaaa 2540
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 44.1 bits (22), Expect = 0.30 Identities = 43/50 (86%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctctt 345 ||||| |||||||||||||| || || || ||||| |||| ||||||||| Sbjct: 48502 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctt 48551
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 44.1 bits (22), Expect = 0.30 Identities = 43/50 (86%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctctt 345 ||||| |||||||||||||| || || || ||||| |||| ||||||||| Sbjct: 316 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctt 365
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 44.1 bits (22), Expect = 0.30 Identities = 43/50 (86%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctctt 345 ||||| |||||||||||||| || || || ||||| |||| ||||||||| Sbjct: 232 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctt 281
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 44.1 bits (22), Expect = 0.30 Identities = 43/50 (86%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctctt 345 ||||| |||||||||||||| || || || ||||| |||| ||||||||| Sbjct: 329 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctt 378
>gb|AE004597.1| Pseudomonas aeruginosa PAO1, section 158 of 529 of the complete genome Length = 10052 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 gcgaggtcgagaaccagcagaagaaa 226 |||| ||||||||||||||||||||| Sbjct: 6919 gcgaagtcgagaaccagcagaagaaa 6944
>gb|AF035922.1|AF035922 Pseudomonas aeruginosa PepB and PepD genes, complete cds; and ExsC gene, partial cds Length = 2688 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 gcgaggtcgagaaccagcagaagaaa 226 |||| ||||||||||||||||||||| Sbjct: 452 gcgaagtcgagaaccagcagaagaaa 477
>gb|AF010149.1|AF010149 Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB (popB) and PopD (popD) genes, complete cds Length = 4168 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 gcgaggtcgagaaccagcagaagaaa 226 |||| ||||||||||||||||||||| Sbjct: 2361 gcgaagtcgagaaccagcagaagaaa 2386
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 ggagatcgtcgccagcgaggt 207 ||||||||||||||||||||| Sbjct: 5095484 ggagatcgtcgccagcgaggt 5095464
>ref|NM_190755.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcggcagctcccgccggccg 107 |||||||||||||||||||| Sbjct: 141 gcggcagctcccgccggccg 160
>emb|CR706170.3|CNS0G7TY Tetraodon nigroviridis full-length cDNA Length = 447 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cctccacagccgccagctcg 311 |||||||||||||||||||| Sbjct: 23 cctccacagccgccagctcg 42
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 cctgcttttcgcggcggcggtcgg 144 ||||||| |||||||||||||||| Sbjct: 3214943 cctgcttctcgcggcggcggtcgg 3214920
>emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase sigma factor Length = 2674 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gcctgcttttcgcggcggcg 139 |||||||||||||||||||| Sbjct: 2429 gcctgcttttcgcggcggcg 2410
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 cctgcttttcgcggcggcggtcgg 144 ||||||| |||||||||||||||| Sbjct: 4599415 cctgcttctcgcggcggcggtcgg 4599392
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gacgccgacgacgccatggc 258 |||||||||||||||||||| Sbjct: 22103919 gacgccgacgacgccatggc 22103900
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccccgctgacgccgacgacg 251 |||||||||||||||||||| Sbjct: 13170622 ccccgctgacgccgacgacg 13170603
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 cggtcgggctcatcggcggc 157 |||||||||||||||||||| Sbjct: 2968702 cggtcgggctcatcggcggc 2968683
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctgcttttcgcggcggcggt 141 |||||||||||||||||||| Sbjct: 2131662 ctgcttttcgcggcggcggt 2131643
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccccgctgacgccgacgacg 251 |||||||||||||||||||| Sbjct: 87810 ccccgctgacgccgacgacg 87791
>gb|AE005084.1| Halobacterium sp. NRC-1 section 115 of 170 of the complete genome Length = 11691 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ccgcggagatcgacgaggac 292 |||||||||||||||||||| Sbjct: 3436 ccgcggagatcgacgaggac 3417
>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1117_F10 Length = 169948 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gacgccgacgacgccatggc 258 |||||||||||||||||||| Sbjct: 66882 gacgccgacgacgccatggc 66863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,347,993 Number of Sequences: 3902068 Number of extensions: 2347993 Number of successful extensions: 51315 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50353 Number of HSP's gapped (non-prelim): 962 length of query: 349 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 327 effective length of database: 17,147,199,772 effective search space: 5607134325444 effective search space used: 5607134325444 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
