>SH2D3_MOUSE (Q9QZS8) SH2 domain-containing protein 3C (SH2 domain-containing|
           Eph receptor-binding protein 1) (Cas/HEF1-associated
           signal transducer)
          Length = 854

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -3

Query: 321 TPAPRACPMAYWIYFVTEPQIIPGNTS*SAACSMGRDDRIAHRYALHLICNATGPKP 151
           TP+  A P +      +EPQ+ PGNT        G  DR  H    H +C A+ P P
Sbjct: 426 TPSTSAQPASPVARRSSEPQLCPGNT----PKPPGESDRAPHASPSHTLCKAS-PSP 477

>ZMY12_HUMAN (Q9H0C1) Zinc finger MYND domain-containing protein 12|
          Length = 365

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 87  QGRRLRCGDCAAPAVVIDGPCTVSDLLHCI*DARHICVRFGRLAPWNKLQISLCCQE*SE 266
           +GRRL C  C APA  +   CTV+          + C    + A W+ +   +C     +
Sbjct: 11  KGRRLCCEVCEAPAERVCAACTVT----------YYCGVVHQKADWDSIHEKIC-----Q 55

Query: 267 VLLQNKSSKPW 299
           +L+  ++S P+
Sbjct: 56  LLIPLRTSMPF 66

>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein|
           1 (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 3   QHQRKPVHLARSSGLTGAAPCFLLSPQAQGRRLRCGDCAAPAVVIDGP 146
           ++QR+P+  ARS G T  +     +P A G  +   D  +P VV+  P
Sbjct: 281 RNQREPLRPARSQGSTAPSSVGAPAPGAPGETVLEDDVESPQVVLGEP 328

>CO4_BOVIN (P01030) Complement C4 precursor [Contains: Complement C4 alpha|
           chain; C4a anaphylatoxin; Complement C4 gamma chain]
           (Fragments)
          Length = 920

 Score = 24.3 bits (51), Expect(2) = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 250 QHKLICSLFHGARRPNR--TQICLASYMQC 167
           +HK  CS+F+GA R ++  + +C A   QC
Sbjct: 739 EHK--CSVFYGAPRKSKLLSTLCSADVCQC 766



 Score = 22.7 bits (47), Expect(2) = 3.9
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
 Frame = -3

Query: 360 HFSAVGPHVQLF--RTPAPRAC 301
           HF   GPHV L+    P  R C
Sbjct: 690 HFETEGPHVLLYFDSVPTSREC 711

>ACKA_MYCTU (P63409) Acetate kinase (EC 2.7.2.1) (Acetokinase)|
          Length = 385

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 140 RPVHGFGPVALHIRCKAYLCAIRSSRPMEQAADQLVLPGMI*GS 271
           RP+ G   + LH+   A   AI   RP+E +     L G++ G+
Sbjct: 181 RPLDGLNQIVLHLGNGASASAIARGRPVETSMGLTPLEGLVMGT 224

>ACKA_MYCBO (P63410) Acetate kinase (EC 2.7.2.1) (Acetokinase)|
          Length = 385

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 140 RPVHGFGPVALHIRCKAYLCAIRSSRPMEQAADQLVLPGMI*GS 271
           RP+ G   + LH+   A   AI   RP+E +     L G++ G+
Sbjct: 181 RPLDGLNQIVLHLGNGASASAIARGRPVETSMGLTPLEGLVMGT 224

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein|
           1 (PRAX-1) (Peripheral benzodiazepine
           receptor-interacting protein) (PBR-IP) (RIM-binding
           protein 1) (RIM-BP1)
          Length = 1846

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 3   QHQRKPVHLARSSGLTGAAPCFLLSPQAQGRRLRCGDCAAPAVVIDGP 146
           ++QR+P+  ARS G T  +     +P A G  +   D  +P VV+  P
Sbjct: 280 RNQREPLRPARSPGPTAPSRVGAPAPGAPGEAVLQDDVESPQVVLREP 327

>RHP42_SCHPO (P87235) DNA repair protein rhp42|
          Length = 686

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = -1

Query: 296 WLTGFIL*QNLRSFLATQADLQLVPWGETTESHTDMPCILYAMQQVRNRARAVDHHG 126
           WL   +L   LR  L  +    +  W  ++++H D+  +L  ++   N++  ++ HG
Sbjct: 171 WLMNSLLLDGLRDLLVEKQPSVVEAWVCSSQTHEDLLKLLNGLRMWWNKSFKIESHG 227

>ZMYM6_HUMAN (O95789) Zinc finger MYM-type protein 6 (Zinc finger protein 258)|
          Length = 723

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +1

Query: 157 RTCCIAYKMQGISVCDSVVSPHGTSCRSACVARNDLRFCYKINPVSHGACAWRWCAEKLH 336
           ++C  +Y+++   V         T C S C    D RF  K   V HG C+   C  K H
Sbjct: 168 QSCLSSYELKKKPVVTIYTKSISTKC-SMCQKNADTRFEVKYQNVVHGLCS-DACFSKFH 225

Query: 337 VRTDRRKMN 363
             T+   MN
Sbjct: 226 -STNNLTMN 233

>ARP3_NEUCR (P78712) Actin-like protein 3 (Actin-related protein 3)|
          Length = 439

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 320 HQRHAHAPWLTGFIL*Q--NLRSFLATQADLQ 231
           H+R  H PW  G +L Q    RS+  T+A+ Q
Sbjct: 389 HKRQRHGPWFGGSLLGQTPEFRSYCHTKAEYQ 420

>UPK3B_HUMAN (Q9BT76) Uroplakin-3B precursor (Uroplakin IIIb) (UPIIIb) (p35)|
          Length = 320

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -3

Query: 207 RIAHRYALHL--ICNATGPKPCTGRRSPRLERH 115
           R+ H +  H    CNA  P P   R  PR+ RH
Sbjct: 185 RVGHDHGCHQQPFCNAPLPGPGPYREDPRIHRH 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,822,333
Number of Sequences: 219361
Number of extensions: 1259210
Number of successful extensions: 3507
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3503
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)