ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14f12 |
|---|---|
| Clone Library Name | barley_pub |
>CHD1_YEAST (P32657) Chromo domain protein 1 (EC 3.6.1.-) (ATP-dependent| helicase CHD1) Length = 1468 Score = 139 bits (351), Expect = 1e-33 Identities = 65/119 (54%), Positives = 92/119 (77%), Gaps = 2/119 (1%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNK--KGGRHVKFHTLITTYEVILKDKAVLSKI 175 KW PD+N + Y+GN+ SR+ +++EF+TN KG + +KF+ L+TTYE ILKD+A L I Sbjct: 446 KWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSI 505 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 KW ++ VDEAHRLKN+E+SLY +L F N++LITGTPLQN+++EL AL++FL P +F Sbjct: 506 KWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRF 564
>HRP3_SCHPO (O14139) Chromodomain helicase hrp3 (EC 3.6.1.-) (ATP-dependent| helicase hrp3) Length = 1388 Score = 139 bits (349), Expect = 2e-33 Identities = 65/120 (54%), Positives = 90/120 (75%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184 W DMN + Y+GN SR++ + +EF+ + G + +KF+ L+TTYE +LKD++VLS IKW Sbjct: 446 WASDMNCISYLGNTTSRQVIRDYEFYVD--GTQKIKFNLLLTTYEYVLKDRSVLSNIKWQ 503 Query: 185 YLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKD 364 Y+ +DEAHRLKNSE+SLY AL +F N+LLITGTPLQN++ EL AL+ FL P KF ++ Sbjct: 504 YMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIRE 563
>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 (EC 3.6.1.-)| (ATP-dependent helicase CHD2) (CHD-2) Length = 1739 Score = 137 bits (346), Expect = 5e-33 Identities = 63/124 (50%), Positives = 93/124 (75%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184 W P++NVV+Y+G+ SR +++E+ ++ + +KF+ LITTYE++LKDK VL I W+ Sbjct: 555 WAPEINVVVYIGDLMSRNTIREYEWIHSQT--KRLKFNALITTYEILLKDKTVLGSINWA 612 Query: 185 YLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKD 364 +L VDEAHRLKN ++ LY L++F + ++LLITGTPLQNS++ELW+LLHF+ P KF + Sbjct: 613 FLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWE 672 Query: 365 TFVE 376 F E Sbjct: 673 DFEE 676
>HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 (EC 3.6.1.-) (ATP-dependent| helicase hrp1) Length = 1373 Score = 134 bits (336), Expect = 7e-32 Identities = 65/120 (54%), Positives = 88/120 (73%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184 W PD+N + Y GN SR +++EF+ + R +KF+ L+TTYE ILKDK L+ I+W Sbjct: 461 WTPDLNSICYTGNTESRANIREYEFYLSTNS-RKLKFNILLTTYEYILKDKQELNNIRWQ 519 Query: 185 YLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKD 364 YL +DEAHRLKNSE+SLY L +F T N+LLITGTPLQN+++EL +L++FL P KF +D Sbjct: 520 YLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLVNFLMPGKFYIRD 579
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 134 bits (336), Expect = 7e-32 Identities = 62/124 (50%), Positives = 92/124 (74%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184 W MN V+Y+G+ SR M + HE+ ++ + +KF+ L+TTYE++LKDKA L + W+ Sbjct: 552 WASQMNAVVYLGDINSRNMIRTHEWTHHQT--KRLKFNILLTTYEILLKDKAFLGGLNWA 609 Query: 185 YLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKD 364 ++ VDEAHRLKN ++ LY L++F + ++LLITGTPLQNS++ELW+LLHF+ P KF+S + Sbjct: 610 FIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWE 669 Query: 365 TFVE 376 F E Sbjct: 670 DFEE 673
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 133 bits (335), Expect = 9e-32 Identities = 62/124 (50%), Positives = 91/124 (73%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184 W MN V+Y+G+ SR M + HE+ + + +KF+ L+TTYE++LKDKA L + W+ Sbjct: 550 WASQMNAVVYLGDINSRNMIRTHEWMHPQT--KRLKFNILLTTYEILLKDKAFLGGLNWA 607 Query: 185 YLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKD 364 ++ VDEAHRLKN ++ LY L++F + ++LLITGTPLQNS++ELW+LLHF+ P KF+S + Sbjct: 608 FIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWE 667 Query: 365 TFVE 376 F E Sbjct: 668 DFEE 671
>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)| (Protein GYMNOS) Length = 1384 Score = 123 bits (308), Expect = 1e-28 Identities = 60/140 (42%), Positives = 91/140 (65%), Gaps = 16/140 (11%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNK--------KGG--------RHVKFHTLITTY 136 W P MNVV+Y G +R + ++HEF+ +K K G + +KF L+T+Y Sbjct: 342 WAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSY 401 Query: 137 EVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEEL 316 E+I D AVL IKW ++VDE HRLKN ++ L+ +L ++S+ +++L+TGTPLQN+++EL Sbjct: 402 EMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDEL 461 Query: 317 WALLHFLDPVKFNSKDTFVE 376 + L+HFLD KF S + F E Sbjct: 462 FMLMHFLDAGKFGSLEEFQE 481
>CHD3_CAEEL (Q22516) Chromodomain helicase-DNA-binding protein 3 homolog (CHD-3)| Length = 1787 Score = 121 bits (304), Expect = 4e-28 Identities = 63/134 (47%), Positives = 94/134 (70%), Gaps = 12/134 (8%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEF-FTNK--KGG---------RHVKFHTLITTYEVIL 148 W PD VV YVG+R SR + ++HEF F + +GG ++KFH L+T+YE I Sbjct: 687 WCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECIN 746 Query: 149 KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALL 328 DKA+LS I W+ L+VDEAHRLKN++++ + L E++ + ++L+TGTPLQN++EEL+ LL Sbjct: 747 MDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLL 806 Query: 329 HFLDPVKFNSKDTF 370 +FL P +FN ++F Sbjct: 807 NFLAPDRFNQLESF 820
>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)| (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta) Length = 1912 Score = 120 bits (301), Expect = 8e-28 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 12/136 (8%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNK---KGGRH---------VKFHTLITTYEVIL 148 W PDM VV YVG++ SR + +++EF +GG+ VKFH L+T+YE+I Sbjct: 797 WAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT 856 Query: 149 KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALL 328 D A+L I W+ L+VDEAHRLKN+++ + L +S ++KLL+TGTPLQN++EEL+ LL Sbjct: 857 IDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLL 916 Query: 329 HFLDPVKFNSKDTFVE 376 +FL P +F++ + F+E Sbjct: 917 NFLTPERFHNLEGFLE 932
>CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 (CHD-4)| Length = 1915 Score = 120 bits (301), Expect = 8e-28 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 12/136 (8%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNK---KGGRH---------VKFHTLITTYEVIL 148 W PDM VV YVG++ SR + +++EF +GG+ VKFH L+T+YE+I Sbjct: 790 WAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT 849 Query: 149 KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALL 328 D A+L I W+ L+VDEAHRLKN+++ + L +S ++KLL+TGTPLQN++EEL+ LL Sbjct: 850 IDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLL 909 Query: 329 HFLDPVKFNSKDTFVE 376 +FL P +F++ + F+E Sbjct: 910 NFLTPERFHNLEGFLE 925
>INO80_DEBHA (Q6BGY8) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1364 Score = 119 bits (297), Expect = 2e-27 Identities = 52/123 (42%), Positives = 87/123 (70%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +++P+ V+ Y GN R++ ++ N + G+ FH L+T+Y++++ D A K+KW Sbjct: 637 RFVPEFKVIPYWGNAKDRKVLRKFWDRKNFRYGKDAPFHVLVTSYQLVVADAAYFQKMKW 696 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEA +K+S++S + +LL FS +N+LL+TGTP+QNS++ELWALLHF+ P F+S Sbjct: 697 QYMILDEAQAIKSSQSSRWKSLLSFSCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSH 756 Query: 362 DTF 370 D F Sbjct: 757 DEF 759
>CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-)| (ATP-dependent helicase CHD8) (CHD-8) (Helicase with SNF2 domain 1) Length = 2302 Score = 117 bits (293), Expect = 7e-27 Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 4/125 (3%) Frame = +2 Query: 14 DMNVVIYVGNRASREMCQQHEFFTNKKGGRHV----KFHTLITTYEVILKDKAVLSKIKW 181 +MN ++Y G+ ASR+M QQ+E + GR + KF LITT+E+IL D L +I+W Sbjct: 604 EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEW 663 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 +++DEAHRLKN L +L ++K+L+TGTPLQN+VEEL++LLHFL+P +F S+ Sbjct: 664 RCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSE 723 Query: 362 DTFVE 376 F++ Sbjct: 724 SEFLK 728
>CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 (EC 3.6.1.-)| (ATP-dependent helicase CHD5) (CHD-5) Length = 1954 Score = 117 bits (293), Expect = 7e-27 Identities = 60/136 (44%), Positives = 90/136 (66%), Gaps = 12/136 (8%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFF-------TNKKGGR-----HVKFHTLITTYEVIL 148 W PD VV Y G++ SR + +++EF + KK R +KFH L+T+YE+I Sbjct: 771 WAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT 830 Query: 149 KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALL 328 D+A+L I+W+ L+VDEAHRLKN+++ + L + KLL+TGTPLQN++EEL+ LL Sbjct: 831 IDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLL 890 Query: 329 HFLDPVKFNSKDTFVE 376 +FL P +FN+ + F+E Sbjct: 891 NFLTPERFNNLEGFLE 906
>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)| (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen 240 kDa protein) (Mi2-alpha) (Zinc-finger helicase) (hZFH) Length = 2000 Score = 116 bits (290), Expect = 2e-26 Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 12/136 (8%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNK---KGGR---------HVKFHTLITTYEVIL 148 W P VV Y G++ SR + +++EF KGG+ VKFH L+T+YE+I Sbjct: 807 WAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 866 Query: 149 KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALL 328 D+A L I+W+ L+VDEAHRLKN+++ + L + +KLL+TGTPLQN++EEL+ LL Sbjct: 867 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 926 Query: 329 HFLDPVKFNSKDTFVE 376 +FL P +FN+ + F+E Sbjct: 927 NFLTPERFNNLEGFLE 942
>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)| (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced gene B protein) Length = 2715 Score = 115 bits (289), Expect = 2e-26 Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 4/125 (3%) Frame = +2 Query: 14 DMNVVIYVGNRASREMCQQHEFFTNKKGGRHV----KFHTLITTYEVILKDKAVLSKIKW 181 +MN ++Y G++ SR+M QQ+E G + KFH +ITT+E+IL D L KI W Sbjct: 533 EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHW 592 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 S +++DEAHRLKN L L + ++K+L+TGTPLQNSVEEL++LL+FL+P +F S+ Sbjct: 593 SCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSE 652 Query: 362 DTFVE 376 F+E Sbjct: 653 TAFLE 657
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 115 bits (289), Expect = 2e-26 Identities = 57/125 (45%), Positives = 87/125 (69%), Gaps = 4/125 (3%) Frame = +2 Query: 14 DMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK----FHTLITTYEVILKDKAVLSKIKW 181 D+NVV+Y G+ SR+M QQ+E + GR ++ F +ITT+E+IL L+ I+W Sbjct: 932 DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEW 991 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 +++DEAHRLKN L L + ++K+L+TGTPLQN+VEEL++LLHFL+P++F S+ Sbjct: 992 RCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSE 1051 Query: 362 DTFVE 376 TF++ Sbjct: 1052 STFMQ 1056
>CHD7_HUMAN (Q9P2D1) Chromodomain-helicase-DNA-binding protein 7 (EC 3.6.1.-)| (ATP-dependent helicase CHD7) (CHD-7) (Fragment) Length = 2235 Score = 115 bits (288), Expect = 3e-26 Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 4/125 (3%) Frame = +2 Query: 14 DMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK----FHTLITTYEVILKDKAVLSKIKW 181 ++NVV+Y G++ASR Q +E + GR +K FH +ITT+E+IL D L I W Sbjct: 278 ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPW 337 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 +++DEAHRLKN L L ++K+L+TGTPLQN+VEEL++LLHFL+P +F S+ Sbjct: 338 RCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSE 397 Query: 362 DTFVE 376 TF++ Sbjct: 398 TTFMQ 402
>INO80_ASHGO (Q74Z27) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1414 Score = 115 bits (287), Expect = 3e-26 Identities = 56/126 (44%), Positives = 89/126 (70%), Gaps = 3/126 (2%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172 K++PD ++ Y GN R++ ++ F ++K R+ K FH +IT+Y++I+ D A L K Sbjct: 725 KFVPDFKILPYWGNGNDRKILRR---FWDRKHLRYSKDAPFHVMITSYQMIVSDAAYLQK 781 Query: 173 IKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 +KW Y+++DEA +K+S++S + LL F +N+LL+TGTP+QNS++ELWALLHF+ P F Sbjct: 782 MKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLF 841 Query: 353 NSKDTF 370 +S D F Sbjct: 842 DSHDEF 847
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 115 bits (287), Expect = 3e-26 Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 4/125 (3%) Frame = +2 Query: 14 DMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK----FHTLITTYEVILKDKAVLSKIKW 181 D+NVV+Y G+ SR+M QQ+E + GR ++ F +ITT+E+IL L+ I W Sbjct: 931 DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIDW 990 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 +++DEAHRLKN L L + ++K+L+TGTPLQN+VEEL++LLHFL+P++F S+ Sbjct: 991 RCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSE 1050 Query: 362 DTFVE 376 TF++ Sbjct: 1051 STFMQ 1055
>INO80_YEAST (P53115) Putative DNA helicase INO80 (EC 3.6.1.-)| (Inositol-requiering protein 80) Length = 1489 Score = 114 bits (284), Expect = 7e-26 Identities = 51/125 (40%), Positives = 85/125 (68%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 K+LP ++ Y GN R++ ++ N + ++ FH ++T+Y++++ D L K+KW Sbjct: 776 KFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKW 835 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEA +K+S++S + LL F +N+LL+TGTP+QNS++ELWALLHF+ P F+S Sbjct: 836 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSH 895 Query: 362 DTFVE 376 D F E Sbjct: 896 DEFNE 900
>INO80_KLULA (Q6CNY4) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1489 Score = 112 bits (279), Expect = 3e-25 Identities = 48/123 (39%), Positives = 84/123 (68%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +++P ++ Y GN R+ ++ + + GR FH ++T+Y++++ D + L K+KW Sbjct: 816 RFVPQFKILPYWGNANDRKTLRKFWDRKHLRYGRDAPFHVMVTSYQMVVSDASYLQKMKW 875 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEA +K+S++S + LL F +N+LL+TGTP+QN+++ELWALLHF+ P F+S Sbjct: 876 QYMILDEAQAIKSSQSSRWKTLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSH 935 Query: 362 DTF 370 D F Sbjct: 936 DEF 938
>SMCA1_HUMAN (P28370) Probable global transcription activator SNF2L1 (EC| 3.6.1.-) (ATP-dependent helicase SMARCA1) (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1) Length = 976 Score = 111 bits (277), Expect = 5e-25 Identities = 51/123 (41%), Positives = 81/123 (65%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +W+P + V+ +VG++ +R + E + + +T+YE+++K+K+V K W Sbjct: 175 RWVPSLRVICFVGDKDARAAFIRDEMMPGE-------WDVCVTSYEMVIKEKSVFKKFHW 227 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 YL++DEAHR+KN ++ L + EF + N+LL+TGTPLQN++ ELWALL+FL P FNS Sbjct: 228 RYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSA 287 Query: 362 DTF 370 D F Sbjct: 288 DDF 290
>INO80_CANAL (Q59KI4) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1387 Score = 111 bits (277), Expect = 5e-25 Identities = 54/126 (42%), Positives = 88/126 (69%), Gaps = 3/126 (2%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172 K++P+ V+ Y GN R++ ++ F ++K R+ K FH L+T+Y++I+ D A K Sbjct: 742 KFVPEFKVLPYWGNAKDRKILRK---FWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQK 798 Query: 173 IKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 +KW Y+++DEA +K+S +S + +LL + +N+LL+TGTP+QNS++ELWALLHF+ P F Sbjct: 799 MKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSIF 858 Query: 353 NSKDTF 370 +S D F Sbjct: 859 DSHDEF 864
>ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain isw-1 (EC| 3.6.1.-) Length = 1009 Score = 110 bits (276), Expect = 6e-25 Identities = 54/123 (43%), Positives = 77/123 (62%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P +N V+ +G+ A+R + K F TTYE++LK K L K+ W Sbjct: 202 KWCPSINAVVLIGDEAARNQVLRDVILPQK-------FDVCCTTYEMMLKVKTQLKKLNW 254 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEAHR+KN ++ L + E +++N+LLITGTPLQN++ ELWALL+FL P F S Sbjct: 255 RYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSS 314 Query: 362 DTF 370 D F Sbjct: 315 DDF 317
>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1612 Score = 110 bits (276), Expect = 6e-25 Identities = 52/128 (40%), Positives = 89/128 (69%), Gaps = 3/128 (2%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172 K++P++ V+ Y GN R++ ++ F ++K + K FH L+T+Y++++ D K Sbjct: 868 KFVPNIKVLPYWGNAKDRKILRK---FWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQK 924 Query: 173 IKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 +KW Y+++DEA +K+S++S + +LL F +N+LL+TGTP+QN+++ELWALLHF+ P F Sbjct: 925 VKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLF 984 Query: 353 NSKDTFVE 376 +S D F E Sbjct: 985 DSHDEFSE 992
>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1708 Score = 110 bits (274), Expect = 1e-24 Identities = 52/128 (40%), Positives = 88/128 (68%), Gaps = 3/128 (2%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172 K++PD+ V+ Y G+ R++ ++ F ++K + K FH L+T+Y++++ D K Sbjct: 903 KFVPDIKVLPYWGSAKDRKVLRK---FWDRKHITYTKESEFHVLVTSYQLVVLDSQYFQK 959 Query: 173 IKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 +KW Y+++DEA +K+S++S + LL F +N+LL+TGTP+QN+++ELWALLHF+ P F Sbjct: 960 VKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLF 1019 Query: 353 NSKDTFVE 376 +S D F E Sbjct: 1020 DSHDEFSE 1027
>STH1_YEAST (P32597) Nuclear protein STH1/NPS1 (EC 3.6.1.-) (ATP-dependent| helicase STH1) (Chromatin structure remodeling complex protein STH1) (SNF2 homolog) Length = 1359 Score = 110 bits (274), Expect = 1e-24 Identities = 55/124 (44%), Positives = 81/124 (65%), Gaps = 1/124 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P +N +IY G R Q H+ R F L+TTYE I+KDK++LSK W Sbjct: 540 KWAPSLNTIIYKGTPNQRHSLQ-HQI-------RVGNFDVLLTTYEYIIKDKSLLSKHDW 591 Query: 182 SYLMVDEAHRLKNSEASLYIALLE-FSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 +++++DE HR+KN+++ L + + T+N+L++TGTPLQN++ ELWALL+F+ P FNS Sbjct: 592 AHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNS 651 Query: 359 KDTF 370 TF Sbjct: 652 AKTF 655
>ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain ISW1 (EC| 3.6.1.-) Length = 1129 Score = 109 bits (272), Expect = 2e-24 Identities = 55/123 (44%), Positives = 79/123 (64%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +W PD+N I G++ R E K G F +I +YE+I+++K+ L KI W Sbjct: 266 RWTPDVNAFILQGDKEERA-----ELIQKKLLG--CDFDVVIASYEIIIREKSPLKKINW 318 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEAHR+KN E+ L L EF+++N+LLITGTPLQN++ ELWALL+FL P F+ Sbjct: 319 EYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDA 378 Query: 362 DTF 370 F Sbjct: 379 QDF 381
>INO80_CANGA (Q6FV37) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1484 Score = 108 bits (271), Expect = 2e-24 Identities = 49/125 (39%), Positives = 84/125 (67%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 K++P ++ Y G+ R++ ++ N + FH +IT+Y++++ D + L K+KW Sbjct: 792 KFVPQFKILPYWGSANDRKVLRKFWDRKNLRYSEKSPFHVMITSYQMVVADASYLQKMKW 851 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEA +K+S++S + LL F +N+LL+TGTP+QN+++ELWALLHF+ P F+S Sbjct: 852 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSH 911 Query: 362 DTFVE 376 D F E Sbjct: 912 DEFNE 916
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent helicase| brm) (Protein brahma) Length = 1638 Score = 108 bits (269), Expect = 4e-24 Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 1/124 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P + VV Y G+ R + Q R KF+ L+TTYE ++KDKAVL+KI+W Sbjct: 843 KWAPAVGVVSYKGSPQGRRLLQNQM--------RATKFNVLLTTYEYVIKDKAVLAKIQW 894 Query: 182 SYLMVDEAHRLKNSEASLYIAL-LEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 Y+++DE HR+KN L L + +LL+TGTPLQN + ELWALL+FL P F S Sbjct: 895 KYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKS 954 Query: 359 KDTF 370 TF Sbjct: 955 CSTF 958
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 108 bits (269), Expect = 4e-24 Identities = 47/125 (37%), Positives = 84/125 (67%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 K++P+ ++ Y G + R++ ++ + + FH +T+Y++++ D A K++W Sbjct: 1115 KFVPEFKILPYWGGASDRKVLRKFWDRKHTTYRKDAPFHVCVTSYQLVVSDVAYFQKMRW 1174 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEA +K+S++S + ALL F +N+LL+TGTP+QN+++ELWALLHF+ P F+S Sbjct: 1175 QYMILDEAQAIKSSQSSRWKALLNFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSH 1234 Query: 362 DTFVE 376 D F E Sbjct: 1235 DEFSE 1239
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 108 bits (269), Expect = 4e-24 Identities = 52/128 (40%), Positives = 86/128 (67%), Gaps = 3/128 (2%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK---FHTLITTYEVILKDKAVLSK 172 K++P V+ Y G R++ ++ F ++K + K FH +IT+Y++++ D A K Sbjct: 1188 KFVPQFKVLPYWGTAGDRKVLRK---FWDRKHTTYKKDAPFHVMITSYQLVVSDVAYFQK 1244 Query: 173 IKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 +KW Y+++DEA +K+S++S + LL F +N+LL+TGTP+QN+++ELWALLHF+ P F Sbjct: 1245 MKWQYMILDEAQAIKSSQSSRWKCLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLF 1304 Query: 353 NSKDTFVE 376 +S D F E Sbjct: 1305 DSHDEFSE 1312
>INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1910 Score = 107 bits (267), Expect = 7e-24 Identities = 51/128 (39%), Positives = 84/128 (65%), Gaps = 3/128 (2%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG---GRHVKFHTLITTYEVILKDKAVLSK 172 K++P + + Y GN R + ++ F N+K R FH L+T+Y++++ D+ + Sbjct: 1068 KFVPTLKALPYWGNVKDRAVLRK---FWNRKQISYNRDAPFHVLVTSYQLVVSDEKYFQR 1124 Query: 173 IKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 +KW Y+++DEA +K+S + + LL F+ +N+LL+TGTP+QNS++ELWALLHF+ P F Sbjct: 1125 VKWQYMILDEAQAIKSSSSIRWKTLLGFNCRNRLLLTGTPVQNSMQELWALLHFIMPSLF 1184 Query: 353 NSKDTFVE 376 +S D F E Sbjct: 1185 DSHDEFSE 1192
>ISWI_DROME (Q24368) Chromatin remodelling complex ATPase chain Iswi (EC| 3.6.1.-) (Protein imitation swi) (Nucleosome remodeling factor 140 kDa subunit) (NURF-140) (CHRAC 140 kDa subunit) Length = 1027 Score = 106 bits (265), Expect = 1e-23 Identities = 52/125 (41%), Positives = 77/125 (61%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P + V +G++ +R + + + +T+YE+ +++K+V K W Sbjct: 198 KWCPSLRAVCLIGDQDTRNTFIRDVLMPGE-------WDVCVTSYEMCIREKSVFKKFNW 250 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 YL++DEAHR+KN ++ L L EF T N+LLITGTPLQN++ ELWALL+FL P FNS Sbjct: 251 RYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSS 310 Query: 362 DTFVE 376 + F E Sbjct: 311 EDFDE 315
>SMCA5_MOUSE (Q91ZW3) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 5 (EC 3.6.1.-) (Sucrose nonfermenting protein 2 homolog) (mSnf2h) Length = 1051 Score = 106 bits (264), Expect = 2e-23 Identities = 50/123 (40%), Positives = 77/123 (62%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW+P + V +G++ R + + + +T+YE+++K+K+V K W Sbjct: 249 KWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-------WDVCVTSYEMLIKEKSVFKKFNW 301 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 YL++DEAHR+KN ++ L + EF T N+LL+TGTPLQN++ ELW+LL+FL P FNS Sbjct: 302 RYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSA 361 Query: 362 DTF 370 D F Sbjct: 362 DDF 364
>SMCA5_HUMAN (O60264) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 5 (EC 3.6.1.-) (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2 Length = 1052 Score = 105 bits (261), Expect = 3e-23 Identities = 49/123 (39%), Positives = 77/123 (62%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +W+P + V +G++ R + + + +T+YE+++K+K+V K W Sbjct: 250 RWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-------WDVCVTSYEMLIKEKSVFKKFNW 302 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 YL++DEAHR+KN ++ L + EF T N+LL+TGTPLQN++ ELW+LL+FL P FNS Sbjct: 303 RYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSA 362 Query: 362 DTF 370 D F Sbjct: 363 DDF 365
>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC 3.6.1.-)| (ATP-dependent helicase SMARCA4) (SNF2-beta) (BRG-1 protein) (Mitotic growth and transcription activator) (Brahma protein homolog 1) (SWI/SNF-related matrix-associated actin Length = 1647 Score = 104 bits (259), Expect = 6e-23 Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 1/124 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P + V Y G+ A+R F + G KF+ L+TTYE I+KDK +L+KI+W Sbjct: 824 KWAPSVVKVSYKGSPAARRA-----FVPQLRSG---KFNVLLTTYEYIIKDKHILAKIRW 875 Query: 182 SYLMVDEAHRLKNSEASLYIAL-LEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 Y++VDE HR+KN L L + +LL+TGTPLQN + ELWALL+FL P F S Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935 Query: 359 KDTF 370 TF Sbjct: 936 CSTF 939
>SNF21_SCHPO (Q9UTN6) SNF2-family ATP dependent chromatin remodeling factor| snf21 (EC 3.6.1.-) (ATP-dependent helicase snf21) Length = 1199 Score = 103 bits (256), Expect = 1e-22 Identities = 52/126 (41%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +W P + ++Y G R+ RH F L+TTYE I+KD+ +LS+IKW Sbjct: 487 RWAPSIVKIVYKGPPQVRKALHPQV--------RHSNFQVLLTTYEYIIKDRPLLSRIKW 538 Query: 182 SYLMVDEAHRLKNSEASLYIALLE-FSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 Y+++DE HR+KN+++ L L +S++ +L++TGTPLQN++ ELWALL+F+ P FNS Sbjct: 539 IYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNS 598 Query: 359 KDTFVE 376 +F E Sbjct: 599 IKSFDE 604
>CHD3_DROME (O16102) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)| (ATP-dependent helicase Chd3) Length = 892 Score = 102 bits (253), Expect = 3e-22 Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 7/129 (5%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFF-------TNKKGGRHVKFHTLITTYEVILKDKAV 163 W P++ V YVG + +R + ++HE T ++ KF+ ++T+YE I D A Sbjct: 338 WAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAF 397 Query: 164 LSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 L I W+ L+VDEAHRL+++++ + L ++ KLL+TGTPLQN++EEL+ LL+FL Sbjct: 398 LGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSS 457 Query: 344 VKFNSKDTF 370 KFN TF Sbjct: 458 GKFNDLQTF 466
>INO80_CRYNE (Q5KHM0) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1765 Score = 100 bits (250), Expect = 7e-22 Identities = 47/125 (37%), Positives = 80/125 (64%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +++P + + Y G+ RE ++ N+ FH LIT+Y++ ++D+ L +KW Sbjct: 941 RFVPRLKALPYWGSPKDRETLRKIWSRKNQTFSEDSPFHILITSYQLAVQDEKYLQGMKW 1000 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEA +K+S ++ + +LL +N+LL+TGTP+QNS+ ELWALLHF+ P F+S Sbjct: 1001 QYMILDEAQAIKSSSSARWKSLLSLHCRNRLLLTGTPIQNSMHELWALLHFIMPQLFDSH 1060 Query: 362 DTFVE 376 + F E Sbjct: 1061 EEFAE 1065
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC| 3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2) Length = 1982 Score = 100 bits (248), Expect = 1e-21 Identities = 52/132 (39%), Positives = 79/132 (59%), Gaps = 10/132 (7%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGR----------HVKFHTLITTYEVILKD 154 W PD + Y+G++ SR + +++E + R KF+ L+T+YE+I D Sbjct: 801 WAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELISMD 860 Query: 155 KAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHF 334 A L I W+ L+VDEAHRLK++++ + L ++ KLL+TGTPLQN++EEL+ LL+F Sbjct: 861 AACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF 920 Query: 335 LDPVKFNSKDTF 370 L KFN F Sbjct: 921 LSRDKFNDLQAF 932
>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC 3.6.1.-)| (ATP-dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix associated actin dependent regulator of chromatin subfamily A member 2) (hBRM) Length = 1586 Score = 100 bits (248), Expect = 1e-21 Identities = 54/124 (43%), Positives = 71/124 (57%), Gaps = 1/124 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P + + Y G A R R KF+ L+TTYE I+KDK +L+KI+W Sbjct: 790 KWAPSVVKISYKGTPAMRRSLVPQL--------RSGKFNVLLTTYEYIIKDKHILAKIRW 841 Query: 182 SYLMVDEAHRLKNSEASLYIAL-LEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 Y++VDE HR+KN L L + ++L+TGTPLQN + ELWALL+FL P F S Sbjct: 842 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKS 901 Query: 359 KDTF 370 TF Sbjct: 902 CSTF 905
>SNF22_SCHPO (O94421) SNF2-family ATP dependent chromatin remodeling factor snf22| (EC 3.6.1.-) (ATP-dependent helicase snf22) Length = 1680 Score = 97.4 bits (241), Expect = 7e-21 Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P + + Y G R+ Q +N F+ L+TT+E I+KD+ +LS+IKW Sbjct: 939 KWAPSVKKIAYKGPPQLRKTLQSQIRSSN--------FNVLLTTFEYIIKDRPLLSRIKW 990 Query: 182 SYLMVDEAHRLKNSEASLYIAL-LEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 ++++DE HR+KN+++ L L + ++ +L++TGTPLQN++ ELWALL+F+ P FNS Sbjct: 991 VHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNS 1050 Query: 359 KDTFVE 376 +F E Sbjct: 1051 IKSFDE 1056
>ISW2_ARATH (Q8RWY3) Putative chromatin remodelling complex ATPase chain (EC| 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) Length = 1057 Score = 97.1 bits (240), Expect = 9e-21 Identities = 48/109 (44%), Positives = 70/109 (64%), Gaps = 8/109 (7%) Frame = +2 Query: 74 EFFTNKKGGRHV--------KFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEA 229 +F N + RH+ KF +T++E+ +K+K L + W Y+++DEAHR+KN + Sbjct: 268 KFLGNPEERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENS 327 Query: 230 SLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKDTFVE 376 L + FST +LLITGTPLQN++ ELWALL+FL P F+S +TF E Sbjct: 328 LLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDE 376
>SNF2_YEAST (P22082) Transcription regulatory protein SNF2 (EC 3.6.1.-)| (ATP-dependent helicase SNF2) (SWI/SNF complex component SNF2) (Regulatory protein SWI2) (Regulatory protein GAM1) (Transcription factor TYE3) Length = 1703 Score = 96.7 bits (239), Expect = 1e-20 Identities = 48/126 (38%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P + + + G+ R+ Q R +F ++TT+E I+K++A+LSK+KW Sbjct: 837 KWAPTLRTISFKGSPNERKAKQAKI--------RAGEFDVVLTTFEYIIKERALLSKVKW 888 Query: 182 SYLMVDEAHRLKNSEASLYIAL-LEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 ++++DE HR+KN+++ L + L + +L++TGTPLQN++ ELWALL+F+ P FNS Sbjct: 889 VHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNS 948 Query: 359 KDTFVE 376 +F E Sbjct: 949 VKSFDE 954
>SWR1_EMENI (Q5ARK3) Helicase swr1 (EC 3.6.1.-)| Length = 1656 Score = 96.7 bits (239), Expect = 1e-20 Identities = 46/114 (40%), Positives = 72/114 (63%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P ++ Y GN+ R ++ N ++ LIT+Y+++L+D+ VL + W Sbjct: 853 KWCPGFKIMTYYGNQEERRQKRRGWMDDNS-------WNVLITSYQLVLQDQQVLKRRSW 905 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 Y+++DEAH +KN + + ALL F T+ +LL+TGTPLQN++ ELW+LL FL P Sbjct: 906 HYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMP 959
>YFK8_YEAST (P43610) Hypothetical ATP-dependent helicase YFR038W (EC 3.6.1.-)| Length = 853 Score = 95.9 bits (237), Expect = 2e-20 Identities = 49/123 (39%), Positives = 75/123 (60%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 K+ PD+ V+ Y G +E + + F + GG + +IT+YE+IL+D ++ W Sbjct: 291 KFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGI----VITSYEIILRDTDLIMSQNW 346 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 +L+VDE HRLKN L L + +T N+LL+TGTPLQN++ ELW+LL+F+ P F Sbjct: 347 KFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIFADF 406 Query: 362 DTF 370 + F Sbjct: 407 EIF 409
>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)| Length = 1845 Score = 94.4 bits (233), Expect = 6e-20 Identities = 46/125 (36%), Positives = 82/125 (65%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P ++ Y GN+ R+ ++ + + N ++ IT+Y+++L+D+ V + +W Sbjct: 1015 KWCPGFKILTYYGNQEERK--RKRQGWNNDD-----VWNVCITSYQMVLQDQQVFRRRRW 1067 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEAH +KN ++ + LL F+T+ +LL+TGTPLQN++ ELW+LL+FL P + N + Sbjct: 1068 HYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTELWSLLYFLAPPE-NGE 1126 Query: 362 DTFVE 376 FV+ Sbjct: 1127 GGFVD 1131
>SWR1_CANAL (Q59U81) Helicase SWR1 (EC 3.6.1.-)| Length = 1641 Score = 94.0 bits (232), Expect = 8e-20 Identities = 45/115 (39%), Positives = 75/115 (65%), Gaps = 1/115 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178 K+ P V+ Y G+ R +KG + FH IT+Y+++++D+ + + Sbjct: 893 KFAPGFKVLTYYGSPQQRAQ--------KRKGWNKPDAFHVCITSYQLVVQDQQSFKRRR 944 Query: 179 WSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W+Y+++DEAH +KN ++ + ALL F+T+N+LL+TGTPLQN++ ELW+LL+FL P Sbjct: 945 WTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMP 999
>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC| 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) Length = 1107 Score = 94.0 bits (232), Expect = 8e-20 Identities = 46/125 (36%), Positives = 76/125 (60%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 ++ P + V ++GN R +++ K F +T++E+ +K+K L + W Sbjct: 301 RFCPILRAVKFLGNPEERNHIRENLLQPGK-------FDVCVTSFEMAIKEKTTLKRFSW 353 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEAHR+KN + L + ++T +LLITGTPLQN++ ELW+LL+FL P F+S Sbjct: 354 RYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSA 413 Query: 362 DTFVE 376 +TF E Sbjct: 414 ETFDE 418
>SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)| Length = 1695 Score = 92.8 bits (229), Expect = 2e-19 Identities = 45/114 (39%), Positives = 73/114 (64%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P ++ Y G+ R Q+ + +T+ ++ LIT+Y+++L+D+ VL + W Sbjct: 900 KWCPGFKIMTYYGSIEERR--QKRKGWTDD-----TSWNVLITSYQLVLQDQQVLKRRNW 952 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 Y+++DEAH +KN + + LL F T+ +LL+TGTPLQN++ ELW+LL FL P Sbjct: 953 HYMVLDEAHNIKNFRSQKWQTLLTFRTRARLLLTGTPLQNNLTELWSLLFFLMP 1006
>SWR1_CRYNE (Q5K8T2) Helicase SWR1 (EC 3.6.1.-)| Length = 1246 Score = 92.0 bits (227), Expect = 3e-19 Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK--FHTLITTYEVILKDKAVLSKI 175 K+LP M V+ Y GN+ R+ K+ G H + + IT+Y+++L D+ + + Sbjct: 463 KFLPGMKVLTYYGNQKERK---------EKRVGWHTENTWQVCITSYQIVLADQHIFRRK 513 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W Y+++DEAH +KN + + LL F + +LL+TGTPLQN++ ELW+LL+FL P Sbjct: 514 NWCYMILDEAHNIKNFRSQRWQTLLGFKAQRRLLLTGTPLQNNLMELWSLLYFLMP 569
>SWR1_CANGA (Q6FK48) Helicase SWR1 (EC 3.6.1.-)| Length = 1450 Score = 92.0 bits (227), Expect = 3e-19 Identities = 44/115 (38%), Positives = 73/115 (63%), Gaps = 1/115 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178 ++ P V+ Y GN R+ +KG + FH I +Y++I++D+ + K Sbjct: 698 RFAPGFKVLTYYGNPQQRK--------EKRKGWNKPDAFHVCIVSYQLIVQDQHSFKRKK 749 Query: 179 WSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W Y+++DEAH +KN ++ + ALL F+T+ ++L+TGTPLQN++ ELW+LL+FL P Sbjct: 750 WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRILLTGTPLQNNIAELWSLLYFLMP 804
>SWR1_DEBHA (Q6BKC2) Helicase SWR1 (EC 3.6.1.-)| Length = 1616 Score = 91.7 bits (226), Expect = 4e-19 Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 1/115 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178 K+ P V+ Y G+ R +KG + FH IT+Y++++ D + + Sbjct: 851 KFAPGFKVLTYYGSPQQRAQ--------KRKGWNKPNAFHVCITSYQLVVHDHQSFKRRR 902 Query: 179 WSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W Y+++DEAH +KN ++ + ALL F+T+N+LL+TGTPLQN++ ELW+LL+FL P Sbjct: 903 WRYMILDEAHNIKNFRSARWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMP 957
>SWR1_ASHGO (Q759G7) Helicase SWR1 (EC 3.6.1.-)| Length = 1486 Score = 91.3 bits (225), Expect = 5e-19 Identities = 43/115 (37%), Positives = 74/115 (64%), Gaps = 1/115 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK-FHTLITTYEVILKDKAVLSKIK 178 ++ P V+ Y G+ R+ ++G + FH IT+Y++++ D+ + K Sbjct: 741 RFAPGFKVLSYYGSPQQRK--------EKRRGWNKLDAFHVCITSYQLVVHDQHSFKRKK 792 Query: 179 WSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W Y+++DEAH +KN +++ + ALL F+T+ +LL+TGTPLQN++ ELW+LL+FL P Sbjct: 793 WQYMILDEAHNIKNFKSTRWQALLNFNTRRRLLLTGTPLQNNIAELWSLLYFLMP 847
>SWR1_SCHPO (O13682) Helicase swr1 (EC 3.6.1.-)| Length = 1288 Score = 90.9 bits (224), Expect = 7e-19 Identities = 44/116 (37%), Positives = 73/116 (62%), Gaps = 2/116 (1%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK--FHTLITTYEVILKDKAVLSKI 175 K+LP ++ Y GN R+ K+ G + +H IT+Y+++L+D + Sbjct: 517 KFLPGFKILTYYGNPQERK---------EKRSGWYKPDTWHVCITSYQLVLQDHQPFRRK 567 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 KW Y+++DEAH +KN + + +LL F+ +++LL+TGTPLQN++ ELW+LL+FL P Sbjct: 568 KWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLMP 623
>SWR1_KLULA (Q6CJ38) Helicase SWR1 (EC 3.6.1.-)| Length = 1572 Score = 90.5 bits (223), Expect = 9e-19 Identities = 44/115 (38%), Positives = 72/115 (62%), Gaps = 1/115 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178 ++ P V+ Y G+ R +KG + FH IT+Y++++ D+ + K Sbjct: 835 RFAPGFKVLTYYGSPQQRR--------EKRKGWNKPDAFHVCITSYQLVVHDQHSFKRKK 886 Query: 179 WSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W Y+++DEAH +KN ++ + ALL F+T+ +LL+TGTPLQN++ ELW+LL+FL P Sbjct: 887 WQYMILDEAHNIKNFRSTRWQALLNFNTERRLLLTGTPLQNNLAELWSLLYFLMP 941
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 90.1 bits (222), Expect = 1e-18 Identities = 42/116 (36%), Positives = 76/116 (65%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KW P ++ Y G++ R+ ++ + + N ++ IT+Y+++L+D+ V + +W Sbjct: 881 KWCPGFKILAYYGSQEERK--RKRQGWNNDD-----IWNVCITSYQLVLQDQQVFKRRRW 933 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVK 349 Y+++DEAH +KN ++ + LL F+T+ +LL+TGTPLQN++ ELW+LL FL P + Sbjct: 934 HYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTELWSLLFFLMPAE 989
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 89.4 bits (220), Expect = 2e-18 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 2/123 (1%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGG--RHVKFHTLITTYEVILKDKAVLSKI 175 ++ P V+ Y GN R K+ G + +H IT+Y+++L+D + Sbjct: 979 RFAPGFKVMTYYGNPVQRR---------EKRRGWNKEDTWHVCITSYQLVLQDLFAFRRK 1029 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFN 355 +W Y+++DEAH +KN + + +LL F+T +LL+TGTPLQN++ ELW+LL+FL P N Sbjct: 1030 RWHYMILDEAHNIKNFRSQRWQSLLHFNTVRRLLLTGTPLQNNLMELWSLLYFLMPSSRN 1089 Query: 356 SKD 364 D Sbjct: 1090 QMD 1092
>SWR1_YEAST (Q05471) Helicase SWR1 (EC 3.6.1.-) (Swi2/Snf2-related 1)| Length = 1514 Score = 88.6 bits (218), Expect = 3e-18 Identities = 42/115 (36%), Positives = 73/115 (63%), Gaps = 1/115 (0%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKG-GRHVKFHTLITTYEVILKDKAVLSKIK 178 ++ P V+ Y G+ R+ +KG + FH I +Y+++++D+ + + Sbjct: 766 RFAPGFKVLTYYGSPQQRK--------EKRKGWNKPDAFHVCIVSYQLVVQDQHSFKRKR 817 Query: 179 WSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W Y+++DEAH +KN ++ + ALL F+T+ +LL+TGTPLQN++ ELW+LL+FL P Sbjct: 818 WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMP 872
>SWR1_USTMA (Q4P328) Helicase SWR1 (EC 3.6.1.-)| Length = 1830 Score = 86.7 bits (213), Expect = 1e-17 Identities = 42/116 (36%), Positives = 74/116 (63%), Gaps = 2/116 (1%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVK--FHTLITTYEVILKDKAVLSKI 175 K+LP ++ Y GN+ R+ K+ G + + F+ IT+Y+++L D+ + + Sbjct: 1060 KFLPGFKILSYYGNQKERK---------EKRIGWNTENSFNVCITSYQLVLADQHIFRRK 1110 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W YL++DEAH +KN + + LL F+++ +LL+TGTPLQN++ +LW+L++FL P Sbjct: 1111 PWVYLVLDEAHHIKNFRSQRWQTLLGFNSQRRLLLTGTPLQNNLMDLWSLMYFLMP 1166
>SMRCD_MOUSE (Q04692) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase SMARCAD1) (Enhancer trap locus homolog 1) (Etl-1) Length = 1021 Score = 77.4 bits (189), Expect = 8e-15 Identities = 41/121 (33%), Positives = 73/121 (60%), Gaps = 3/121 (2%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILK---DKAVLSKI 175 W P +NV+ Y G++ R+ Q F + K + ++ ++TTY + D+++ ++ Sbjct: 562 WCPSLNVLCYYGSQEERK---QIRFNIHNK---YEDYNVIVTTYNCAISSSDDRSLFRRL 615 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFN 355 K +Y + DE H LKN + Y L+ + +N+LL+TGTP+QN++ EL +LL+F+ P F+ Sbjct: 616 KLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFS 675 Query: 356 S 358 S Sbjct: 676 S 676
>MOT1_YEAST (P32333) TATA-binding protein-associated factor MOT1 (EC 3.6.1.-)| (TBP-associated factor MOT1) (Modifier of transcription 1) Length = 1867 Score = 77.0 bits (188), Expect = 1e-14 Identities = 35/85 (41%), Positives = 59/85 (69%) Frame = +2 Query: 122 LITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQN 301 ++T+Y+V D AVL+K +++Y ++DE H +KNS++ L A+ E + ++L++TGTP+QN Sbjct: 1383 IVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQN 1442 Query: 302 SVEELWALLHFLDPVKFNSKDTFVE 376 +V ELW+L FL P ++ F E Sbjct: 1443 NVLELWSLFDFLMPGFLGTEKMFQE 1467
>MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-associated factor| mot1) (Modifier of transcription 1) Length = 1953 Score = 75.1 bits (183), Expect = 4e-14 Identities = 42/124 (33%), Positives = 67/124 (54%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWS 184 + P + V YVG A R K + K ++T+Y++ D L KI W+ Sbjct: 1440 YAPFLKVSAYVGPPAERA----------KIRSKMKKSDVVVTSYDICRNDVDELVKIDWN 1489 Query: 185 YLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKD 364 Y ++DE H +KN+ A L A+ + ++L+++GTP+QN+V ELW+L FL P ++ Sbjct: 1490 YCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEK 1549 Query: 365 TFVE 376 TF E Sbjct: 1550 TFQE 1553
>SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase 1) (hHEL1) Length = 1026 Score = 73.9 bits (180), Expect = 9e-14 Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILK---DKAVLSKI 175 W P + V+ Y G++ R+ + + R+ ++ ++TTY + D+++ ++ Sbjct: 567 WCPTLKVLCYYGSQEERKQIRFNIH------SRYEDYNVIVTTYNCAISSSDDRSLFRRL 620 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFN 355 K +Y + DE H LKN + Y L+ + N+LL+TGTP+QN++ EL +LL+F+ P F+ Sbjct: 621 KLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFS 680 Query: 356 S 358 S Sbjct: 681 S 681
>RAD26_YEAST (P40352) DNA repair and recombination protein RAD26 (EC 3.6.1.-)| (ATP-dependent helicase RAD26) Length = 1085 Score = 73.6 bits (179), Expect = 1e-13 Identities = 30/85 (35%), Positives = 53/85 (62%) Frame = +2 Query: 116 HTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPL 295 H LITTY + L K+KW Y ++DE H+++N ++ + + + T N+++++GTP+ Sbjct: 442 HILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPI 501 Query: 296 QNSVEELWALLHFLDPVKFNSKDTF 370 QN++ ELW+L F+ P K + F Sbjct: 502 QNNLTELWSLFDFIFPGKLGTLPVF 526
>ERCC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (EC 3.6.1.-)| (ATP-dependent helicase ERCC6) (Cockayne syndrome protein CSB) Length = 1493 Score = 71.6 bits (174), Expect = 4e-13 Identities = 29/85 (34%), Positives = 57/85 (67%) Frame = +2 Query: 122 LITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQN 301 LIT+Y I + +S+ W Y+++DE H+++N A++ +A +F T ++++++G+P+QN Sbjct: 621 LITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQN 680 Query: 302 SVEELWALLHFLDPVKFNSKDTFVE 376 ++ ELW+L F+ P K + F+E Sbjct: 681 NLRELWSLFDFIFPGKLGTLPVFME 705
>RAD54_HUMAN (Q92698) DNA repair and recombination protein RAD54-like (EC| 3.6.1.-) (RAD54 homolog) (hRAD54) (hHR54) Length = 747 Score = 71.6 bits (174), Expect = 4e-13 Identities = 42/113 (37%), Positives = 63/113 (55%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KWL + + + E+ Q+ E F N++G R V LI +YE VL K Sbjct: 232 KWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGAR-VSSPILIISYETFRLHVGVLQKGSV 290 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 ++ DE HRLKNSE Y AL +T ++LI+GTP+QN + E ++L+HF++ Sbjct: 291 GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVN 343
>RA54B_HUMAN (Q9Y620) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 910 Score = 69.7 bits (169), Expect = 2e-12 Identities = 30/81 (37%), Positives = 53/81 (65%) Frame = +2 Query: 101 RHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLI 280 + + + LI +YE++L+ + IK+ L+ DE HRLKNS AL+ S + ++++ Sbjct: 399 KSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIIL 458 Query: 281 TGTPLQNSVEELWALLHFLDP 343 TGTP+QN ++E +AL+ F++P Sbjct: 459 TGTPIQNDLQEFFALIDFVNP 479
>RAD54_MOUSE (P70270) DNA repair and recombination protein RAD54-like (EC| 3.6.1.-) (RAD54 homolog) (mRAD54) (mHR54) Length = 747 Score = 69.7 bits (169), Expect = 2e-12 Identities = 41/113 (36%), Positives = 63/113 (55%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KWL + + + E+ ++ E F N++G R V LI +YE VL K Sbjct: 232 KWLGGRIQPLAIDGGSKDEIDRKLEGFMNQRGAR-VPSPILIISYETFRLHVGVLKKGNV 290 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 ++ DE HRLKNSE Y AL +T ++LI+GTP+QN + E ++L+HF++ Sbjct: 291 GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVN 343
>RA54B_CHICK (Q9DG67) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 918 Score = 68.9 bits (167), Expect = 3e-12 Identities = 30/86 (34%), Positives = 54/86 (62%) Frame = +2 Query: 113 FHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTP 292 + +I +YE++L+ + I+++ L+ DE HRLKNS AL S + ++++TGTP Sbjct: 410 YSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTP 469 Query: 293 LQNSVEELWALLHFLDPVKFNSKDTF 370 +QN ++E +AL+ F++P S T+ Sbjct: 470 IQNDLQEFYALIEFVNPGVLGSLSTY 495
>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (mDomino) Length = 3072 Score = 68.2 bits (165), Expect = 5e-12 Identities = 34/114 (29%), Positives = 59/114 (51%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +W P + + YVG+ RE+ + + +T FH IT+Y+ + S++ W Sbjct: 1160 RWCPGLKTLSYVGSH--RELKAKRQEWTEPNN-----FHICITSYKQFFRGYTAFSRVHW 1212 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 L+VDE R+K + A+ + ++ +LL+ PL N+ ELW ++HFL P Sbjct: 1213 KCLVVDEMQRVKGMTERHWEAIFKLQSQQRLLLIDVPLHNTFLELWTMVHFLIP 1266
>YAB9_YEAST (P31380) Hypothetical 128.5 kDa ATP-dependent helicase in ATS1-TPD3| intergenic region (EC 3.6.1.-) Length = 1131 Score = 66.2 bits (160), Expect = 2e-11 Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIK- 178 K+ P + + Y G+ RE + + G K+ ++TTY + +K +S +K Sbjct: 641 KFAPALKIEPYYGSLQERE--ELRDILERNAG----KYDVIVTTYNLAAGNKYDVSFLKN 694 Query: 179 --WSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 ++ ++ DE H LKNS + + L++ +LL+TGTPLQN+++EL +LL F+ P F Sbjct: 695 RNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLF 754 Query: 353 NSK 361 SK Sbjct: 755 ISK 757
>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (TNF-response element-binding protein) (P113) Length = 1003 Score = 65.9 bits (159), Expect = 2e-11 Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 5/77 (6%) Frame = +2 Query: 122 LITTYEVIL-----KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITG 286 ++TTY ++ KD + L IKW +++DE H ++N A A+LE + + ++TG Sbjct: 521 ILTTYNILTHDYGTKDDSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTG 580 Query: 287 TPLQNSVEELWALLHFL 337 TP+QNS+++LW+LL FL Sbjct: 581 TPIQNSLKDLWSLLSFL 597
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 65.5 bits (158), Expect = 3e-11 Identities = 30/114 (26%), Positives = 57/114 (50%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 +W P + ++ Y+G+ + +Q N FH IT+Y + ++++W Sbjct: 1161 RWCPGLKILSYIGSHRELKAKRQEWAEPNS-------FHVCITSYTQFFRGLTAFTRVRW 1213 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 L++DE R+K + A+ ++ +LL+ +PL N+ ELW ++HFL P Sbjct: 1214 KCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPLHNTFLELWTMVHFLVP 1267
>BTAF1_HUMAN (O14981) TATA-binding protein-associated factor 172 (EC 3.6.1.-)| (ATP-dependent helicase BTAF1) (TBP-associated factor 172) (TAF-172) (TAF(II)170) (B-TFIID transcription factor-associated 170 kDa subunit) Length = 1849 Score = 64.7 bits (156), Expect = 5e-11 Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Frame = +2 Query: 107 VKFHTLIT-TYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLIT 283 VK H LI +Y+V+ D IK++Y ++DE H +KN + L A+ + + +++++ Sbjct: 1373 VKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILS 1432 Query: 284 GTPLQNSVEELWALLHFLDP 343 GTP+QN+V ELW+L FL P Sbjct: 1433 GTPIQNNVLELWSLFDFLMP 1452
>RA54B_MOUSE (Q6PFE3) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 886 Score = 63.5 bits (153), Expect = 1e-10 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Frame = +2 Query: 113 FHT-LITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGT 289 FH+ LI +YE++L+ + I + L+ DE HRLKNS AL S + +++TGT Sbjct: 380 FHSVLIISYEMLLRSLDQIKTIPFGLLICDEGHRLKNSSIKTTTALSSLSCEKTVILTGT 439 Query: 290 PLQNSVEELWALLHFLDP 343 P+QN ++E +AL+ F++P Sbjct: 440 PVQNDLQEFFALVDFVNP 457
>RAD54_SCHPO (P41410) DNA repair protein rhp54 (EC 3.6.1.-) (RAD54 homolog 1)| Length = 852 Score = 63.5 bits (153), Expect = 1e-10 Identities = 31/91 (34%), Positives = 54/91 (59%) Frame = +2 Query: 98 GRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLL 277 GR V LI +YE + L+ + L+ DE HRLKNS++ + AL + + + +++ Sbjct: 377 GRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVI 436 Query: 278 ITGTPLQNSVEELWALLHFLDPVKFNSKDTF 370 ++GTP+QN + E ++LL+F +P S+ F Sbjct: 437 LSGTPIQNDLSEYFSLLNFANPGLLGSRQEF 467
>YFC1_SCHPO (O42861) Probable ATP-dependent helicase C25A8.01c in chromosome I| (EC 3.6.1.-) Length = 922 Score = 62.4 bits (150), Expect = 3e-10 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKA---VLSK 172 K+ P + + +Y G++ RE ++ +NK ++ ++TTY + KA L Sbjct: 456 KFCPKLKIELYYGSQVEREEIRER-INSNKDS-----YNVMLTTYRLAATSKADRLFLRN 509 Query: 173 IKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 K++ + DE H LKN + Y L+ ++L+TGTPLQN+++EL +LL F+ P F Sbjct: 510 QKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVF 569 Query: 353 N 355 + Sbjct: 570 D 570
>RAD54_CHICK (O12944) DNA repair and recombination protein RAD54-like (EC| 3.6.1.-) (RAD54 homolog) (Putative recombination factor GdRad54) (Fragment) Length = 733 Score = 61.6 bits (148), Expect = 4e-10 Identities = 38/113 (33%), Positives = 60/113 (53%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 KWL + + + E+ ++ N++G R V LI +YE L K Sbjct: 221 KWLGGRIQPLAIDGGSKEEIDRKLVGSMNQRGLR-VPSPILIISYETFRLHAEALQKGSV 279 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 ++ DE HRLKNSE Y AL +T ++LI+GTP+QN + E ++L+HF++ Sbjct: 280 GLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVN 332
>SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (DNA binding protein/plasminogen activator inhibitor 1 regulator) (Helicase-like tran Length = 1009 Score = 61.2 bits (147), Expect = 6e-10 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 5/77 (6%) Frame = +2 Query: 122 LITTYEVILKDKAV-----LSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITG 286 ++TTY ++ D L I+W +++DE H ++N A A+L+ ++ + ++TG Sbjct: 527 VLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTG 586 Query: 287 TPLQNSVEELWALLHFL 337 TP+QNS+++LW+LL FL Sbjct: 587 TPIQNSLKDLWSLLSFL 603
>RAD54_YEAST (P32863) DNA repair and recombination protein RAD54 (EC 3.6.1.-)| Length = 898 Score = 61.2 bits (147), Expect = 6e-10 Identities = 30/91 (32%), Positives = 51/91 (56%) Frame = +2 Query: 98 GRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLL 277 GR++ LI +YE + ++ L ++ DE HRLKN ++ + AL S +++ Sbjct: 422 GRNIVKPVLIISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVI 481 Query: 278 ITGTPLQNSVEELWALLHFLDPVKFNSKDTF 370 ++GTP+QN + E +ALL F +P S+ F Sbjct: 482 LSGTPIQNDLSEYFALLSFSNPGLLGSRAEF 512
>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (RUSH-1) Length = 1005 Score = 60.8 bits (146), Expect = 8e-10 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 5/77 (6%) Frame = +2 Query: 122 LITTYEVILKDKAV-----LSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITG 286 ++TTY ++ D L I+W +++DE H ++N A A+L+ + + ++TG Sbjct: 524 VLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTG 583 Query: 287 TPLQNSVEELWALLHFL 337 TP+QNS+++LW+LL FL Sbjct: 584 TPIQNSLKDLWSLLSFL 600
>TTF2_DROME (P34739) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) (Protein lodestar) Length = 1061 Score = 60.1 bits (144), Expect = 1e-09 Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Frame = +2 Query: 41 NRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKI---KWSYLMVDEAHR 211 +R +C H KG + ++TTY+++ ++ LS + KW +++DEAH Sbjct: 548 SRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHV 607 Query: 212 LKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKDTF 370 ++N ++ +A+ + K + +TGTP+QN +++ALL FL F+ T+ Sbjct: 608 VRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTW 660
>RDH54_SCHPO (Q09772) Meiotic recombination protein rdh54 (EC 3.6.1.-)| (ATP-dependent helicase rdh54) (RAD54 protein homolog 2) Length = 811 Score = 59.3 bits (142), Expect = 2e-09 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Frame = +2 Query: 5 WLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKD-KAVLSKIKW 181 WL + +Y+ A EF +NK + +IT YE + + I Sbjct: 287 WLGHERIHVYIARCAE----DFQEFTSNKT------YSIIITGYETVCTYLRNYGCGIDI 336 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 L+ DEAHRLK+ + +I L + T+ +LL+TGTPLQN + E +++++F+ P + Sbjct: 337 DLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDLSEYFSMVNFIIPGSLGTP 396 Query: 362 DTF 370 ++F Sbjct: 397 NSF 399
>Y020_MYCPN (P75093) Hypothetical ATP-dependent helicase MPN020 (EC 3.6.1.-)| (D12_orf1030) Length = 1030 Score = 57.8 bits (138), Expect = 6e-09 Identities = 32/118 (27%), Positives = 62/118 (52%) Frame = +2 Query: 23 VVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDE 202 + + V N S+E + +E TN+ LI ++ V+ D +++K ++ Y+++DE Sbjct: 653 IKVKVANIPSKERGELYEKLTNE---------ILIVSFNVLRSDVKLITKQRFHYVVIDE 703 Query: 203 AHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKDTFVE 376 A +KN +S+ A + L +TGTP++N + +LW+ F+ P +K F + Sbjct: 704 AQGIKNDSSSITKAAKKVKGNFCLALTGTPIENRLLDLWSCFDFVLPSFLGNKKQFTD 761
>RDH54_YEAST (P38086) DNA repair and recombination protein RDH54 (RAD homolog| 54) (Recombination factor TID1) (Two-hybrid interaction with DMC1 protein 1) [Includes: DNA topoisomerase (EC 5.99.1.-); Putative helicase (EC 3.6.1.-)] Length = 924 Score = 56.2 bits (134), Expect = 2e-08 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = +2 Query: 113 FHTLITTYEVILKDKAVLSKIKW--SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITG 286 + LI YE +L L K K L+ DE HRLKN + + L + KLL+TG Sbjct: 408 YQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTG 467 Query: 287 TPLQNSVEELWALLHFLDP 343 TP+QN + E + ++ F++P Sbjct: 468 TPIQNDLNEFFTIIDFINP 486
>YBMA_SCHPO (Q10332) Probable ATP-dependent helicase C582.10c in chromosome II| (EC 3.6.1.-) Length = 830 Score = 56.2 bits (134), Expect = 2e-08 Identities = 33/99 (33%), Positives = 52/99 (52%) Frame = +2 Query: 74 EFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLE 253 E+ ++ G K T +YE K K L W +++DEAH +KN + +A Sbjct: 346 EWVSHNTTGTDGKSPTEAKSYE---KKKPSLFAFYWWRIILDEAHTIKNKSSKSALACCA 402 Query: 254 FSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKDTF 370 N+ +TGTPLQN+V+EL++L+ FL FN + + Sbjct: 403 LQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVW 441
>SM3L2_ARATH (Q9FNI6) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 2 (EC 3.6.1.-) (SMARCA3-like protein 2) Length = 1029 Score = 56.2 bits (134), Expect = 2e-08 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 8/80 (10%) Frame = +2 Query: 122 LITTYEVILK--------DKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLL 277 +ITTY V+ D + ++W +++DEAH +KNS++ + +A + Sbjct: 540 VITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWC 599 Query: 278 ITGTPLQNSVEELWALLHFL 337 +TGTP+QN++E+L++LL FL Sbjct: 600 LTGTPIQNNLEDLYSLLRFL 619
>GTA_NPVAC (P41447) Probable global transactivator (EC 3.6.1.-) (ATP-dependent| helicase GTA) Length = 506 Score = 55.8 bits (133), Expect = 2e-08 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 8/90 (8%) Frame = +2 Query: 113 FHTLITTYEVIL--------KDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKN 268 +H ++TTY+V+L ++ L +W +++DEAH +KN + ++ A + N Sbjct: 121 YHIVVTTYDVLLAHFKLIKQNKQSSLFSTRWHRVVLDEAHIIKNCKTGVHNAACALTATN 180 Query: 269 KLLITGTPLQNSVEELWALLHFLDPVKFNS 358 + ITGTP+ N +++++++FL FN+ Sbjct: 181 RWCITGTPIHNKHWDMYSMINFLQCRPFNN 210
>YQHH_BACSU (P54509) Hypothetical ATP-dependent helicase yqhH (EC 3.6.1.-)| Length = 557 Score = 53.9 bits (128), Expect = 9e-08 Identities = 26/74 (35%), Positives = 44/74 (59%) Frame = +2 Query: 155 KAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHF 334 + ++ I + +++DEAH+LKNS+ Y + K LL+T TP+QN +EE++ L+ Sbjct: 161 REIVLSIPYDLVIIDEAHKLKNSKTKNYEFVRNLVKKYCLLLTATPIQNRIEEIFNLVSL 220 Query: 335 LDPVKFNSKDTFVE 376 L P S++ F E Sbjct: 221 LKPGHLGSQNHFQE 234
>Y018_MYCGE (P47264) Hypothetical ATP-dependent helicase MG018 (EC 3.6.1.-)| Length = 1031 Score = 52.4 bits (124), Expect = 3e-07 Identities = 33/123 (26%), Positives = 62/123 (50%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKW 181 K+ P + +V GN +E Q +E N+ L+ ++ V+ D +S+ K+ Sbjct: 648 KFAPHVKIVTANGN--FKERSQVYESLKNQ---------ILLMSFNVLRSDIKWISQKKF 696 Query: 182 SYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSK 361 Y+++DEA +KN +++ A + L +TGTP++N + +LW+ F+ P +K Sbjct: 697 HYVVIDEAQGIKNENSTVTKAAKKIKGNFCLALTGTPIENRLLDLWSCFDFVLPNFLGNK 756 Query: 362 DTF 370 F Sbjct: 757 KQF 759
>RHP16_SCHPO (P79051) DNA repair protein rhp16 (RAD16 homolog)| Length = 861 Score = 52.4 bits (124), Expect = 3e-07 Identities = 25/72 (34%), Positives = 48/72 (66%), Gaps = 2/72 (2%) Frame = +2 Query: 143 ILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWA 322 ++K+K++L ++++ +++DEAH +K+ + A+ T K+ ++GTPLQN + EL++ Sbjct: 375 VVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFS 434 Query: 323 LLHFL--DPVKF 352 LL FL DP + Sbjct: 435 LLRFLRADPFAY 446
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase xnp-1) (X-linked nuclear protein 1) Length = 1359 Score = 52.0 bits (123), Expect = 3e-07 Identities = 22/61 (36%), Positives = 41/61 (67%) Frame = +2 Query: 188 LMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKDT 367 ++ DEAH+LKN +++L +++ TK ++ +TGTPLQN++ E +++F+ P +K Sbjct: 633 VVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLMEYHCMVNFVKPGLLGTKTE 692 Query: 368 F 370 F Sbjct: 693 F 693
>SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 3 (EC 3.6.1.-) (SMARCA3-like protein 3) Length = 1277 Score = 52.0 bits (123), Expect = 3e-07 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 6/78 (7%) Frame = +2 Query: 122 LITTYEVILKD------KAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLIT 283 ++TTY V+ ++ +I W +++DEAH +K+ + A E S+ + +T Sbjct: 791 VLTTYGVLTSAYKQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLT 850 Query: 284 GTPLQNSVEELWALLHFL 337 GTPLQN +E+L++LL FL Sbjct: 851 GTPLQNKLEDLYSLLCFL 868
>RAD5_SCHPO (P36607) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1133 Score = 52.0 bits (123), Expect = 3e-07 Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 6/78 (7%) Frame = +2 Query: 122 LITTYEVILKD------KAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLIT 283 +IT+Y V+L + + L + W +++DE H ++N E+ A S++N+ +IT Sbjct: 625 IITSYGVLLSEFSQQSHSSGLFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVIT 684 Query: 284 GTPLQNSVEELWALLHFL 337 GTP+ N +++L++L+ F+ Sbjct: 685 GTPIVNKLDDLYSLIKFM 702
>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) Length = 1184 Score = 51.6 bits (122), Expect = 5e-07 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 24/103 (23%) Frame = +2 Query: 101 RHVK----FHTLITTYEVILKD--------------------KAVLSKIKWSYLMVDEAH 208 RH K + +ITTY ++ K+ A L ++ W+ +++DEAH Sbjct: 703 RHAKVLSTYDIVITTYSLLAKEIPTTKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAH 762 Query: 209 RLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFL 337 +KN IA+ + + + +TGTP+QN++ ++++L+ FL Sbjct: 763 NVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFL 805
>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 1 (EC 3.6.1.-) (SMARCA3-like protein 1) Length = 881 Score = 51.2 bits (121), Expect = 6e-07 Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Frame = +2 Query: 107 VKFHTLITTYEVILKDKA----VLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKL 274 +K+ ++TTY + +++ + K++W +++DEAH +KN+ A + + + Sbjct: 403 MKYDIVLTTYGTLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRW 462 Query: 275 LITGTPLQNSVEELWALLHFLDPVKFNSK 361 +TGTP+QN +L++L+ FL F+ K Sbjct: 463 AVTGTPIQNGSFDLYSLMAFLRFEPFSIK 491
>ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase XNP) (X-linked nuclear protein) (dXNP) (d-xnp) Length = 1311 Score = 50.1 bits (118), Expect = 1e-06 Identities = 20/52 (38%), Positives = 35/52 (67%) Frame = +2 Query: 188 LMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 ++ DE H LKN + S+ A+ TK ++++TGTPLQN++ E + ++ F+ P Sbjct: 612 VVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKP 663
>TTF2_HUMAN (Q9UNY4) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) (Factor 2) (F2) (HuF2) (Lodestar homolog) Length = 1162 Score = 49.7 bits (117), Expect = 2e-06 Identities = 21/58 (36%), Positives = 38/58 (65%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFL 337 L +I W+ +++DEAH +KN IA+ + + +TGTP+QN++ ++++LL FL Sbjct: 726 LLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFL 783
>GTA_NPVOP (O10302) Probable global transactivator (EC 3.6.1.-) (ATP-dependent| helicase GTA) Length = 498 Score = 49.3 bits (116), Expect = 2e-06 Identities = 20/53 (37%), Positives = 34/53 (64%) Frame = +2 Query: 179 WSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFL 337 W +++DEAH +KN + ++ A S N+ ITGTP+ N +++A++HFL Sbjct: 151 WHRVVLDEAHVIKNHQTGVHAAACALSADNRWCITGTPIHNRHWDMYAIIHFL 203
>RAD16_YEAST (P31244) DNA repair protein RAD16 (EC 3.6.1.-) (ATP-dependent| helicase RAD16) Length = 790 Score = 48.9 bits (115), Expect = 3e-06 Identities = 21/66 (31%), Positives = 43/66 (65%) Frame = +2 Query: 143 ILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWA 322 + K +VL I + +++DEAH +K+ +++ A+ T+ + ++GTPLQN + E+++ Sbjct: 304 LFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYS 363 Query: 323 LLHFLD 340 L+ FL+ Sbjct: 364 LIRFLN 369
>RAD5_GIBZE (Q4IJ84) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1154 Score = 48.9 bits (115), Expect = 3e-06 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 13/92 (14%) Frame = +2 Query: 122 LITTYEVILKDKAVLS-------------KIKWSYLMVDEAHRLKNSEASLYIALLEFST 262 +IT+Y V+L + + L+ +++ +++DEAH +KN + A E S Sbjct: 629 VITSYGVVLSEFSSLAARNGDKSFHNGLFSLRFFRIIIDEAHHIKNRSSKTSKACYEISA 688 Query: 263 KNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 ++ +TGTP+ N +E+L++L+ FL +N+ Sbjct: 689 THRWALTGTPIVNKLEDLFSLVRFLGVEPWNN 720
>RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-)| Length = 1222 Score = 48.5 bits (114), Expect = 4e-06 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 13/92 (14%) Frame = +2 Query: 122 LITTYEVILKDKAVLS-------------KIKWSYLMVDEAHRLKNSEASLYIALLEFST 262 +IT+Y V+L + L+ + + +++DEAH +KN +A A E + Sbjct: 691 IITSYGVVLSEFTQLATKNGDRLSSRGLFSLNFFRVILDEAHNIKNRQAKTSRACYEIAA 750 Query: 263 KNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 +++ ++TGTP+ N +E+L++L+ FL +N+ Sbjct: 751 EHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNN 782
>RAD5_EMENI (Q5BHD6) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1202 Score = 48.5 bits (114), Expect = 4e-06 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 17/131 (12%) Frame = +2 Query: 17 MNVVIYVGNRAS---REMCQQHEFFTNKKGGRHVKFHTLITTYEVILKD----KAVLSKI 175 M V++Y GN + REMC G + ++T+Y V++ + +A+ Sbjct: 586 MKVLMYYGNEKNVNLREMCS---------AGNAAAPNMILTSYGVVMSEHRTHQALAPGT 636 Query: 176 KWS----------YLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWAL 325 W+ +++DEAH +KN + A + ++ ++TGTP+ N +E+L++L Sbjct: 637 SWTPGNLFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSL 696 Query: 326 LHFLDPVKFNS 358 + FL +N+ Sbjct: 697 VRFLRVEPWNN 707
>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked nuclear protein) (Heterochromatin protein 2) (HP1 alpha-interacting protein) (HP1-BP38 protein) Length = 2476 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/89 (28%), Positives = 48/89 (53%) Frame = +2 Query: 71 HEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALL 250 +E + N GR+VK L + L D +++ DE H LKN +++ A+ Sbjct: 1668 YEMYRNLAQGRNVKSRKLKDIFNKALVDPGP------DFVVCDEGHILKNEASAVSKAMN 1721 Query: 251 EFSTKNKLLITGTPLQNSVEELWALLHFL 337 ++ ++++TGTPLQN++ E +++F+ Sbjct: 1722 SIKSRRRIILTGTPLQNNLIEYHCMVNFI 1750
>RAD5_ASPFU (Q4WVM1) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1245 Score = 47.4 bits (111), Expect = 9e-06 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 14/128 (10%) Frame = +2 Query: 17 MNVVIYVGNRAS---REMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLS------ 169 M V++Y G S +E+C G + +IT+Y V+L + L+ Sbjct: 639 MKVLMYYGVDKSTNLQELCS---------AGNPAAPNIIITSYGVVLSESRQLAMFNSNT 689 Query: 170 -----KIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHF 334 + + +++DEAH +KN + A E ++ ++TGTP+ N +E+L++L+ F Sbjct: 690 QGGLFSVDFFRVILDEAHVIKNRRSKTARACYELRATHRWVLTGTPIVNRLEDLFSLVRF 749 Query: 335 LDPVKFNS 358 L +N+ Sbjct: 750 LQVEPWNN 757
>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 47.4 bits (111), Expect = 9e-06 Identities = 25/89 (28%), Positives = 48/89 (53%) Frame = +2 Query: 71 HEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALL 250 +E + N GR+VK L + L D +++ DE H LKN +++ A+ Sbjct: 1683 YEMYRNLAQGRNVKSRKLKEIFNKALVDPGP------DFVVCDEGHILKNEASAVSKAMN 1736 Query: 251 EFSTKNKLLITGTPLQNSVEELWALLHFL 337 ++ ++++TGTPLQN++ E +++F+ Sbjct: 1737 SIRSRRRIILTGTPLQNNLIEYHCMVNFI 1765
>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 47.4 bits (111), Expect = 9e-06 Identities = 25/89 (28%), Positives = 48/89 (53%) Frame = +2 Query: 71 HEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALL 250 +E + N GR+VK L + L D +++ DE H LKN +++ A+ Sbjct: 1683 YEMYRNLAQGRNVKSRKLKEIFNKALVDPGP------DFVVCDEGHILKNEASAVSKAMN 1736 Query: 251 EFSTKNKLLITGTPLQNSVEELWALLHFL 337 ++ ++++TGTPLQN++ E +++F+ Sbjct: 1737 SIRSRRRIILTGTPLQNNLIEYHCMVNFI 1765
>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf-HX) Length = 2492 Score = 47.4 bits (111), Expect = 9e-06 Identities = 25/89 (28%), Positives = 48/89 (53%) Frame = +2 Query: 71 HEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALL 250 +E + N GR+VK L + L D +++ DE H LKN +++ A+ Sbjct: 1683 YEMYRNLAQGRNVKSRKLKEIFNKALVDPGP------DFVVCDEGHILKNEASAVSKAMN 1736 Query: 251 EFSTKNKLLITGTPLQNSVEELWALLHFL 337 ++ ++++TGTPLQN++ E +++F+ Sbjct: 1737 SIRSRRRIILTGTPLQNNLIEYHCMVNFI 1765
>RAD5_CANAL (Q5ACX1) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1084 Score = 47.4 bits (111), Expect = 9e-06 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 15/94 (15%) Frame = +2 Query: 122 LITTYEVILKDKAVLSK---------------IKWSYLMVDEAHRLKNSEASLYIALLEF 256 +ITTY +L + LSK +K+ +++DE H ++N ++ E Sbjct: 554 MITTYGTVLNEFTRLSKRRNSKGELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYEL 613 Query: 257 STKNKLLITGTPLQNSVEELWALLHFLDPVKFNS 358 + K ++TGTP+ N +++L++L FL+ +N+ Sbjct: 614 QSSRKWILTGTPIVNRLDDLYSLTKFLELDPWNN 647
>RAPA_PHOPR (Q6LV34) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 972 Score = 47.4 bits (111), Expect = 9e-06 Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = +2 Query: 179 WSYLMVDEAHRLKNSEAS-----LYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W L+VDEAH L+ SE + L +T LL+T TP Q E +A L LDP Sbjct: 274 WDLLVVDEAHHLEWSEDKPSRQYQVVEALAEATPGVLLLTATPEQLGRESHFARLRLLDP 333 Query: 344 VKFNSKDTFVE 376 +F DTFVE Sbjct: 334 DRFYDYDTFVE 344
>RAD5_DEBHA (Q6BIP2) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1153 Score = 47.0 bits (110), Expect = 1e-05 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 15/119 (12%) Frame = +2 Query: 29 IYVGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKD---------------KAV 163 IY G+ A+ ++ NKK + +ITTY +L + K Sbjct: 613 IYYGDLATTDLSP---VLCNKKKDIPI---VMITTYGTVLNEFTRISNRRDAKGFLPKIG 666 Query: 164 LSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 L +K+ +++DE H ++N A A+ E K ++TGTP+ N +++L++L+ FL+ Sbjct: 667 LFSVKFFRIVLDEGHNIRNRTAKTSKAIYEILLNRKWVLTGTPVINRLDDLYSLVKFLE 725
>RAD5_CANGA (Q6FY76) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1151 Score = 47.0 bits (110), Expect = 1e-05 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 16/88 (18%) Frame = +2 Query: 122 LITTYEVILKDKAVLSK----------------IKWSYLMVDEAHRLKNSEASLYIALLE 253 ++TTY ++ + LSK I++ +++DE H ++N A+LE Sbjct: 621 VLTTYGIVQNEWTKLSKDGTNIRSLGRTSGIFSIEFFRIILDEGHTIRNKSTITSKAVLE 680 Query: 254 FSTKNKLLITGTPLQNSVEELWALLHFL 337 S+K + ++TGTP+ N +++L++L+ FL Sbjct: 681 LSSKYRWILTGTPIINRLDDLYSLVKFL 708
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 46.2 bits (108), Expect = 2e-05 Identities = 20/50 (40%), Positives = 34/50 (68%) Frame = +2 Query: 188 LMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFL 337 +++DEAH ++N A + A E + + +TGTP+ N +E+L++LLHFL Sbjct: 685 IVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFL 734
>RAPA_SALTY (Q8ZRV8) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 44.3 bits (103), Expect = 7e-05 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRL---KNSEASLYIALLEFSTK--NKLLITGTPLQNSVEELWALL 328 L +W L+VDEAH L ++ + Y+A+ + + + LL+T TP Q +E +A L Sbjct: 268 LCDAEWDLLVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARL 327 Query: 329 HFLDPVKFNSKDTFVE 376 LDP +F+ + FVE Sbjct: 328 RLLDPNRFHDFEQFVE 343
>RAPA_SALTI (Q8Z9J4) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 44.3 bits (103), Expect = 7e-05 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRL---KNSEASLYIALLEFSTK--NKLLITGTPLQNSVEELWALL 328 L +W L+VDEAH L ++ + Y+A+ + + + LL+T TP Q +E +A L Sbjct: 268 LCDAEWDLLVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARL 327 Query: 329 HFLDPVKFNSKDTFVE 376 LDP +F+ + FVE Sbjct: 328 RLLDPNRFHDFEQFVE 343
>RAPA_HAEDU (Q7VKV0) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 973 Score = 43.5 bits (101), Expect = 1e-04 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Frame = +2 Query: 179 WSYLMVDEAHRL-----KNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W L+VDEAH L ++S+A ++A L LL+T TP Q ++ +A L LDP Sbjct: 279 WDLLIVDEAHHLVCSATESSQAYQFVARLAKKITAVLLLTATPEQLGLDSHFARLALLDP 338 Query: 344 VKFNSKDTFV 373 +F TF+ Sbjct: 339 DRFYDYATFI 348
>RAD5_USTMA (Q4PGG5) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1387 Score = 43.1 bits (100), Expect = 2e-04 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Frame = +2 Query: 113 FHTLITTYEVILKD----------KAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFST 262 + TL+T Y L A L I W +++DEAH +KN A + + Sbjct: 793 YGTLVTEYRRFLDGGGASNRHLSVSAPLYCIDWLRVILDEAHNIKNRSTMNARACCDLVS 852 Query: 263 KNKLLITGTPLQNSVEELWALLHFL 337 + + +TGTP+ N + +L++LL FL Sbjct: 853 RRRWALTGTPIINRLTDLFSLLKFL 877
>RAD5_KLULA (Q6CJM4) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1114 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 5/78 (6%) Frame = +2 Query: 122 LITTYEVILKD-----KAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITG 286 +ITTY +I + + L + + +++DE H ++N A++ + K ++TG Sbjct: 597 IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTG 656 Query: 287 TPLQNSVEELWALLHFLD 340 TP+ N +++L++L+ FL+ Sbjct: 657 TPIINRLDDLFSLVQFLN 674
>RAD5_YARLI (Q6C2R8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1025 Score = 42.7 bits (99), Expect = 2e-04 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 16/97 (16%) Frame = +2 Query: 113 FHTLITTYEVILK-----DKAVLSKIK-----------WSYLMVDEAHRLKNSEASLYIA 244 +HTL++ Y I D+ V+S+ + +++DEAH +KN A Sbjct: 514 YHTLVSHYGQIKALGGGLDRNVISETSSHERPKIFTKHFHRIVLDEAHVIKNRNTVSAKA 573 Query: 245 LLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFN 355 NK +TGTP+ N +E+L+++L FL +N Sbjct: 574 CCLLRATNKWALTGTPIHNRLEDLFSILKFLGAAPWN 610
>RAD5_ASHGO (Q753V5) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1085 Score = 42.7 bits (99), Expect = 2e-04 Identities = 15/59 (25%), Positives = 39/59 (66%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 L +++ +++DE H ++N A++ +++ K ++TGTP+ N +++L++L+ F++ Sbjct: 592 LFSVEFFRIILDEGHNIRNRTTKTSKAVMALTSRRKWVLTGTPIMNRLDDLFSLIKFMN 650
>RAPA_VIBPA (Q87LD0) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 42.4 bits (98), Expect = 3e-04 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Frame = +2 Query: 176 KWSYLMVDEAHRL-----KNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 +W L+VDEAH L K S + L T LL+T TP Q E +A L LD Sbjct: 273 EWDLLVVDEAHHLEWSQDKPSREYQVVEGLAERTPGVLLLTATPEQLGRESHFARLRLLD 332 Query: 341 PVKFNSKDTFVE 376 P +F + FVE Sbjct: 333 PDRFYDYEAFVE 344
>RAPA_SHIFL (Q7UDT5) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 42.4 bits (98), Expect = 3e-04 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSE---ASLYIALLEFS--TKNKLLITGTPLQNSVEELWALL 328 L + +W L+VDEAH L SE + Y A+ + + LL+T TP Q +E +A L Sbjct: 268 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARL 327 Query: 329 HFLDPVKFNSKDTFVE 376 LDP +F+ FVE Sbjct: 328 RLLDPNRFHDFAQFVE 343
>RAPA_ECOLI (P60240) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 42.4 bits (98), Expect = 3e-04 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSE---ASLYIALLEFS--TKNKLLITGTPLQNSVEELWALL 328 L + +W L+VDEAH L SE + Y A+ + + LL+T TP Q +E +A L Sbjct: 268 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARL 327 Query: 329 HFLDPVKFNSKDTFVE 376 LDP +F+ FVE Sbjct: 328 RLLDPNRFHDFAQFVE 343
>RAPA_ECOL6 (Q8FL92) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 42.4 bits (98), Expect = 3e-04 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSE---ASLYIALLEFS--TKNKLLITGTPLQNSVEELWALL 328 L + +W L+VDEAH L SE + Y A+ + + LL+T TP Q +E +A L Sbjct: 268 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARL 327 Query: 329 HFLDPVKFNSKDTFVE 376 LDP +F+ FVE Sbjct: 328 RLLDPNRFHDFAQFVE 343
>RAPA_ECO57 (P60241) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 42.4 bits (98), Expect = 3e-04 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSE---ASLYIALLEFS--TKNKLLITGTPLQNSVEELWALL 328 L + +W L+VDEAH L SE + Y A+ + + LL+T TP Q +E +A L Sbjct: 268 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARL 327 Query: 329 HFLDPVKFNSKDTFVE 376 LDP +F+ FVE Sbjct: 328 RLLDPNRFHDFAQFVE 343
>RAPA_ERWCT (Q6D0E6) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 42.0 bits (97), Expect = 4e-04 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Frame = +2 Query: 158 AVLSKIKWSYLMVDEAHRLKNSEAS-----LYIALLEFSTKNKLLITGTPLQNSVEELWA 322 A L W L+VDEAH L SE S I L +T LL+T TP Q + +A Sbjct: 266 AQLVNTDWDLLVVDEAHHLVWSEESPSPEYQAIEALARATPAVLLLTATPEQLGQQSHFA 325 Query: 323 LLHFLDPVKFNSKDTFV 373 L LDP +F+ FV Sbjct: 326 RLRLLDPNRFHDYQEFV 342
>RAD5_YEAST (P32849) DNA repair protein RAD5 (EC 3.6.1.-) (Radiation| sensitivity protein 5) (Revertibility protein 2) Length = 1169 Score = 40.8 bits (94), Expect = 8e-04 Identities = 17/59 (28%), Positives = 36/59 (61%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 L + + +++DE H ++N A++ K K ++TGTP+ N +++L++L+ FL+ Sbjct: 670 LFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFLE 728
>RAPA_PHOLL (Q7N8V1) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 970 Score = 40.8 bits (94), Expect = 8e-04 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Frame = +2 Query: 179 WSYLMVDEAHRLKNSEAS-----LYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W ++VDEAH L SE + + L + LL+T TP Q E +A L LDP Sbjct: 274 WDLMVVDEAHHLVWSEDAPSREYQVVEQLAEQIPSVLLLTATPEQLGQESHFARLRLLDP 333 Query: 344 VKFNSKDTFVE 376 +F+ TF++ Sbjct: 334 NRFHDYQTFID 344
>RAPA_SHEON (Q8EJ93) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 968 Score = 40.4 bits (93), Expect = 0.001 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%) Frame = +2 Query: 122 LITTYEVILKDKAVLSKIK--WSYLMVDEAHRLKNSE-----ASLYIALLEFSTKNKLLI 280 +I + E++ K K + + W L+VDEAH L+ +E A + L LL+ Sbjct: 251 VICSLELLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRAYQVVEALSEVVPGVLLL 310 Query: 281 TGTPLQNSVEELWALLHFLDPVKFNSKDTFV 373 T TP Q E +A L LDP +F D F+ Sbjct: 311 TATPDQLGHESHFARLRLLDPDRFYDYDAFL 341
>RAPA_YERPS (Q66EN4) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 968 Score = 40.0 bits (92), Expect = 0.001 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSEAS-----LYIALLEFSTKNKLLITGTPLQNSVEELWALL 328 L+ W L+VDEAH L SE + I L LL+T TP Q + +A L Sbjct: 269 LADASWDLLVVDEAHHLAWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQSHFARL 328 Query: 329 HFLDPVKFNSKDTFV 373 LDP +F+ + FV Sbjct: 329 RLLDPDRFHDYEEFV 343
>RAPA_HAEIN (P44781) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 923 Score = 40.0 bits (92), Expect = 0.001 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Frame = +2 Query: 188 LMVDEAHRLKNSEAS-----LYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKF 352 L+VDEAH L SE S L + L + LL+T TP Q E +A L LDP +F Sbjct: 275 LIVDEAHHLVWSETSPSTAYLLVEQLARIIPSVLLLTATPEQLGQESHFARLRLLDPERF 334 Query: 353 NSKDTFVE 376 TFV+ Sbjct: 335 FDYQTFVK 342
>RAPA_VIBCH (Q9KP70) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 39.7 bits (91), Expect = 0.002 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = +2 Query: 176 KWSYLMVDEAHRL-----KNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 +W L+VDEAH L K S I L T LL+T TP Q E +A L LD Sbjct: 273 EWDLLVVDEAHHLEWHPEKPSREYQVIEALAEQTPGVLLLTATPEQLGRESHFARLRLLD 332 Query: 341 PVKFNSKDTFVE 376 +F + FV+ Sbjct: 333 ADRFYDYEAFVK 344
>RAPA_YERPE (Q8ZII0) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 968 Score = 39.3 bits (90), Expect = 0.002 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Frame = +2 Query: 164 LSKIKWSYLMVDEAHRLKNSEAS-----LYIALLEFSTKNKLLITGTPLQNSVEELWALL 328 L+ W L+VDEAH + SE + I L LL+T TP Q + +A L Sbjct: 269 LADASWDLLVVDEAHHMAWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQSHFARL 328 Query: 329 HFLDPVKFNSKDTFV 373 LDP +F+ + FV Sbjct: 329 RLLDPDRFHDYEEFV 343
>RAPA_VIBVU (Q8DCG1) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 38.1 bits (87), Expect = 0.005 Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Frame = +2 Query: 176 KWSYLMVDEAHRL-----KNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLD 340 +W L+VDEAH L K S + L T LL+T TP Q E +A L LD Sbjct: 273 EWDLLVVDEAHHLEWSQDKPSRGYQVVEGLAERTPGVLLLTATPEQLGRESHFARLRLLD 332 Query: 341 PVKFNSKDTFVE 376 +F FVE Sbjct: 333 SDRFYDYAAFVE 344
>RAPA_PSEAE (Q9HYT6) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 950 Score = 38.1 bits (87), Expect = 0.005 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Frame = +2 Query: 179 WSYLMVDEAHRL--KNSEASLYIALLEFSTK---NKLLITGTPLQNSVEELWALLHFLDP 343 W L+VDEAH L + S AL+E + LL+T TP Q + +A L LDP Sbjct: 273 WDLLVVDEAHHLVWHQDQVSAEYALVEQLAEIIPGVLLLTATPEQLGQDSHFARLRLLDP 332 Query: 344 VKFNSKDTF 370 +F+ + F Sbjct: 333 NRFHDLEAF 341
>RAPA_VIBVY (Q7MHE6) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 37.7 bits (86), Expect = 0.007 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Frame = +2 Query: 179 WSYLMVDEAHRL-----KNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 343 W L+VDEAH L K S + L T LL+T TP Q E +A L LD Sbjct: 274 WDLLVVDEAHHLEWSQDKPSRGYQVVEGLAERTPGVLLLTATPEQLGRESHFARLRLLDS 333 Query: 344 VKFNSKDTFVE 376 +F FVE Sbjct: 334 DRFYDYAAFVE 344
>RAPA_PASMU (Q9CK01) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 36.2 bits (82), Expect = 0.020 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Frame = +2 Query: 188 LMVDEAHRLKNSE--ASLYIALLEFSTKN---KLLITGTPLQNSVEELWALLHFLDPVKF 352 L+VDEAH L SE SL L+E + LL+T TP Q E +A L LDP +F Sbjct: 280 LIVDEAHHLGWSEHNPSLEYQLVEQLARQIPAVLLLTATPEQLGQESHFARLSLLDPDRF 339 Query: 353 NSKDTFVE 376 FV+ Sbjct: 340 YDYQAFVQ 347
>RAPA_PSESM (Q87XS2) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 948 Score = 35.8 bits (81), Expect = 0.026 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Frame = +2 Query: 179 WSYLMVDEAHRL--KNSEASLYIALLEFSTK---NKLLITGTPLQNSVEELWALLHFLDP 343 W ++VDEAH L +AS +L+E + LL+T TP Q + +A L LDP Sbjct: 272 WDLMVVDEAHHLVWHEEKASREYSLVEQLAEVIAGVLLLTATPEQLGQDSHFARLRLLDP 331 Query: 344 VKFNSKDTF 370 +F+ F Sbjct: 332 NRFHDLKAF 340
>SMAL1_CAEEL (Q8MNV7) Putative SMARCAL1-like protein (EC 3.6.1.-)| Length = 690 Score = 35.8 bits (81), Expect = 0.026 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +2 Query: 125 ITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFS--TKNKLLITGTPLQ 298 I +YE ++ +L K K+ ++ DE+H LK+ +A + S + +L++GTP Sbjct: 292 IMSYEQMVLKHDILKKEKYRTIIFDESHMLKDGKARRTKVATDLSKVALHVILLSGTPAL 351 Query: 299 NSVEELWALLHFLDPVKFNSKDTF 370 + EL+ + +D F + F Sbjct: 352 SRPSELFTQIRLIDHKLFTNFHEF 375
>RAPA_PSEPK (Q88NR0) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 948 Score = 35.0 bits (79), Expect = 0.044 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Frame = +2 Query: 179 WSYLMVDEAHRL--KNSEASLYIALLEFSTK---NKLLITGTPLQNSVEELWALLHFLDP 343 W L+VDEAH L + S L+E + LL+T TP Q + +A L LDP Sbjct: 272 WDLLVVDEAHHLVWHEDQVSAEYGLVEQLAQVIPGVLLLTATPEQLGQDSHFARLRLLDP 331 Query: 344 VKFNSKDTF 370 +F+ F Sbjct: 332 NRFHDLAAF 340
>ETF1_FOWPV (P21966) Early transcription factor 70 kDa subunit (EC 3.6.1.-)| (ATP-dependent helicase VETFS) (VETF small subunit) Length = 633 Score = 33.5 bits (75), Expect = 0.13 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 7/98 (7%) Frame = +2 Query: 104 HVKFHTLITTYEVILKDKAV----LSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNK 271 ++ ++ I Y + D V LSK S ++DEAH + + + +++ KNK Sbjct: 100 NIHIYSTINFYSLNYNDNVVNYNALSKYNDSIFIIDEAHNIFGNNTGELMTIIK--NKNK 157 Query: 272 ---LLITGTPLQNSVEELWALLHFLDPVKFNSKDTFVE 376 LL++G+P+ N+ L ++ + N D ++ Sbjct: 158 VPFLLLSGSPITNTPITLSNIISIMSDEGINFNDIIIQ 195
>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3206 Score = 33.5 bits (75), Expect = 0.13 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 116 HTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLL-ITGTP 292 H + T Y + V ++ +++ DE H + +S S Y AL E+S + K+L ++ TP Sbjct: 1413 HVMTTGYALHFFCNNVERIREYDFVIFDECHVIDSSAMSFYCALKEYSYQGKILKVSATP 1472 Query: 293 LQNSVE 310 VE Sbjct: 1473 PGREVE 1478
>POLG_BTMV (Q6XW15) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3085 Score = 32.3 bits (72), Expect = 0.29 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = +2 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLL-ITGTP 292 ++ ++M+DE+H + +S + Y L E+ K K+L ++ TP Sbjct: 1336 EFDFIMIDESHTMDSSTMAFYCLLREYEFKGKILKVSATP 1375
>SMAL1_HUMAN (Q9NZC9) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (HepA-related protein) (hHARP) Length = 954 Score = 31.6 bits (70), Expect = 0.49 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Frame = +2 Query: 125 ITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLEF--STKNKLLITGTPLQ 298 I +++++ K + L K + +++DE+H LKNS + A + K +L++GTP Sbjct: 526 IVSFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAM 584 Query: 299 NSVEELWALLHFLDPVKF 352 + EL+ + + P F Sbjct: 585 SRPAELYTQIIAVKPTFF 602
>SMAL1_BOVIN (Q9TTA5) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (DNA-dependent ATPase A) (HepA-related protein) Length = 941 Score = 31.2 bits (69), Expect = 0.64 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Frame = +2 Query: 125 ITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIAL-LEFSTKNKLLITGTPLQN 301 I +++++ K + L K + +++DE+H LKN + ++ A+ L K +L++GTP + Sbjct: 524 IVSFDLLSKLEKQL-KPPFKVVIIDESHFLKNIKTAVCAAMPLLKVAKRVILLSGTPAMS 582 Query: 302 SVEELWALLHFLDPVKF 352 EL+ + + P F Sbjct: 583 RPAELYTQILAVRPTFF 599
>ETF1_VARV (P33056) Early transcription factor 70 kDa subunit (EC 3.6.1.-)| (ATP-dependent helicase VETFS) (VETF small subunit) Length = 637 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = +2 Query: 80 FTNKKGGRHVKFHTLITTYEVILKDKAV----LSKIKWSYLMVDEAHRLKNSEASLYIAL 247 F ++ ++ H+ + Y + D + LS+ S +VDEAH + + + + Sbjct: 92 FNDEFIAENIFIHSTTSFYSLNYNDNVINYNGLSRYNNSIFIVDEAHNIFGNNTGELMTV 151 Query: 248 LEFSTKNK---LLITGTPLQNSVEELWALLHFL 337 ++ KNK LL++G+P+ N+ L ++ + Sbjct: 152 IK--NKNKIPFLLLSGSPITNTPNTLGHIIDLM 182
>ETF1_VACCV (P04308) Early transcription factor 70 kDa subunit (EC 3.6.1.-)| (ATP-dependent helicase VETFS) (VETF small subunit) Length = 637 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = +2 Query: 80 FTNKKGGRHVKFHTLITTYEVILKDKAV----LSKIKWSYLMVDEAHRLKNSEASLYIAL 247 F ++ ++ H+ + Y + D + LS+ S +VDEAH + + + + Sbjct: 92 FNDEFIAENIFIHSTTSFYSLNYNDNVINYNGLSRYNNSIFIVDEAHNIFGNNTGELMTV 151 Query: 248 LEFSTKNK---LLITGTPLQNSVEELWALLHFL 337 ++ KNK LL++G+P+ N+ L ++ + Sbjct: 152 IK--NKNKIPFLLLSGSPITNTPNTLGHIIDLM 182
>ETF1_VACCC (P20634) Early transcription factor 70 kDa subunit (EC 3.6.1.-)| (ATP-dependent helicase VETFS) (VETF small subunit) Length = 637 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = +2 Query: 80 FTNKKGGRHVKFHTLITTYEVILKDKAV----LSKIKWSYLMVDEAHRLKNSEASLYIAL 247 F ++ ++ H+ + Y + D + LS+ S +VDEAH + + + + Sbjct: 92 FNDEFIAENIFIHSTTSFYSLNYNDNVINYNGLSRYNNSIFIVDEAHNIFGNNTGELMTV 151 Query: 248 LEFSTKNK---LLITGTPLQNSVEELWALLHFL 337 ++ KNK LL++G+P+ N+ L ++ + Sbjct: 152 IK--NKNKIPFLLLSGSPITNTPNTLGHIIDLM 182
>ETF1_VACCA (O93120) Early transcription factor 70 kDa subunit (EC 3.6.1.-)| (ATP-dependent helicase VETFS) (VETF small subunit) Length = 637 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = +2 Query: 80 FTNKKGGRHVKFHTLITTYEVILKDKAV----LSKIKWSYLMVDEAHRLKNSEASLYIAL 247 F ++ ++ H+ + Y + D + LS+ S +VDEAH + + + + Sbjct: 92 FNDEFIAENIFIHSTTSFYSLNYNDNVINYNGLSRYNNSIFIVDEAHNIFGNNTGELMTV 151 Query: 248 LEFSTKNK---LLITGTPLQNSVEELWALLHFL 337 ++ KNK LL++G+P+ N+ L ++ + Sbjct: 152 IK--NKNKIPFLLLSGSPITNTPNTLGHIIDLM 182
>Y012_RICPR (Q9ZED1) Hypothetical protein RP012 precursor| Length = 357 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +2 Query: 170 KIKWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLH 331 K+K +L +D KN E + L+E STK K I P+ V LW H Sbjct: 161 KVKGQFLTIDMCPSSKNFEEVFFKKLVELSTKLKKAI---PITICVSGLWINKH 211
>T1RA_ECOLI (Q07736) Type I restriction enzyme EcoAI R protein (EC 3.1.21.3)| (R.EcoAI) Length = 810 Score = 29.6 bits (65), Expect = 1.9 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = +2 Query: 104 HVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLE-FSTKNKLLI 280 H+ + IT E K ++ + +++DE HR SE S + +L+ FS+ ++ + Sbjct: 262 HLALYQAITGPEEDQKAFKQVAPDFFDLIVIDECHRGSASEDSAWREILDYFSSATQIGL 321 Query: 281 TGTPLQNSVEELWALLHFLDPV 346 T TP E+ + +F DPV Sbjct: 322 TATP--KETHEVSSTDYFGDPV 341
>RS26B_SCHPO (Q9UTG4) 40S ribosomal protein S26-B| Length = 119 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 86 NKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYL-MVDEAHRLKNSEASLY 238 NK G HVKF I + KDKA+ +W+ MV+ A SEAS+Y Sbjct: 11 NKHGRGHVKFVRCINCSRAVPKDKAIK---RWTIRNMVETAAIRDLSEASVY 59
>REP_BUCAI (P57654) ATP-dependent DNA helicase rep (EC 3.6.1.-)| Length = 645 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Frame = +2 Query: 2 KWLPDMNVVIYVGNRASREMCQQHEFFTNKKGGRHV-KFHTLITTYEVILKDKAVLSKIK 178 K+L + V + + ++ +E +TN ++ F LI ++LK+ + KI+ Sbjct: 145 KFLTPLQVQLLAKSSQEKDFAYVYEQYTNYLYKANILDFDDLICMPTLLLKNNKKI-KIR 203 Query: 179 W----SYLMVDEAHRLKNSEASL 235 W SYL+VDE NS+ L Sbjct: 204 WQKKISYLLVDEYQDTNNSQYEL 226
>ETF1_VACCT (Q9JFA3) Early transcription factor 70 kDa subunit (EC 3.6.1.-)| (ATP-dependent helicase VETFS) (VETF small subunit) Length = 637 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 7/93 (7%) Frame = +2 Query: 80 FTNKKGGRHVKFHTLITTYEVILKDKAV----LSKIKWSYLMVDEAHRLKNSEASLYIAL 247 F ++ ++ H+ Y + D + LS+ S +VDEAH + + + + Sbjct: 92 FNDEFIAENIFIHSTTGFYSLNYNDNVINYNGLSRYNNSIFIVDEAHNIFGNNTGELMTV 151 Query: 248 LEFSTKNK---LLITGTPLQNSVEELWALLHFL 337 ++ KNK LL++G+P+ N+ L ++ + Sbjct: 152 IK--NKNKIPFLLLSGSPITNTPNTLGHIIDLM 182
>SPOT_SPICI (O34098) Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase| (EC 3.1.7.2) ((ppGpp)ase) (Penta-phosphate guanosine-3'-pyrophosphohydrolase) Length = 749 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +2 Query: 101 RHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAH--RLKNSEASLYI 241 R +K+ ++ ++ +KD+A L +I+ +Y +E H +++NS A I Sbjct: 3 RDIKYEEVLAQIKLYIKDEATLKEIQKAYEYAEEKHHGQVRNSGARYII 51
>GLMM_AGRT5 (Q8U9L9) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 450 Score = 28.9 bits (63), Expect = 3.2 Identities = 25/91 (27%), Positives = 37/91 (40%) Frame = +2 Query: 35 VGNRASREMCQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRL 214 VG+R E + H F + H+ TT + ++ VL+K+K S L V E R Sbjct: 309 VGDRYVVEHMRNHNFNVGGEQSGHIVLSDYGTTGDGLVAALQVLAKVKRSGLTVSEVCRK 368 Query: 215 KNSEASLYIALLEFSTKNKLLITGTPLQNSV 307 L KN + G PL+N + Sbjct: 369 FEPVPQL--------LKNVRISGGKPLENPI 391
>HELX_SULSO (P95949) Putative ATP-dependent helicase SSO0112 (EC 3.6.1.-)| Length = 875 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%) Frame = +2 Query: 116 HTLITTYEVI------LKDKAVLSKIKWSYLMVDEAHRLKNSEASLYI-ALLE 253 H LITT E K L+ +KW ++VDE H L NS+ Y+ A+LE Sbjct: 142 HILITTPESFGISITSPKFSQKLTDVKW--IIVDEIHELANSKRGAYLSAMLE 192
>T1RE_ECOLI (Q47281) Type I restriction enzyme EcoEI R protein (EC 3.1.21.3)| (R.EcoEI) Length = 813 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = +2 Query: 104 HVKFHTLITTYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEASLYIALLE-FSTKNKLLI 280 H+ + IT E K ++ + +++DE HR SE S + +LE F + ++ + Sbjct: 260 HLALYQAITGPEEHQKAYKQVAPDFFDLIVIDECHRGSASEDSAWREILEYFGSATQVGL 319 Query: 281 TGTPLQNSVEELWALLHFLDPV 346 T TP E++ + +F +PV Sbjct: 320 TATP--KETEDVSNIDYFGEPV 339
>YEJH_ECOLI (P33919) Hypothetical protein yejH| Length = 586 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%) Frame = +2 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTK-----NKLLITGTPLQ 298 ++S L+VDE HR+ + E S Y +L TK L +T TP + Sbjct: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFR 155
>Y4PA_RHISN (P55610) Putative transcriptional regulatory protein y4pA| Length = 609 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +2 Query: 200 EAHRLKNSEASLYIALLEFSTKNKLLITGTPLQ 298 + HR + EA+ Y+ + + NK+ + G PLQ Sbjct: 572 QRHRFRRGEAARYLGISRKTLYNKMRVYGLPLQ 604
>POLG_PEMVM (O56075) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3099 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/40 (25%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = +2 Query: 176 KWSYLMVDEAHRLKNSEASLYIALLEFSTKNKLL-ITGTP 292 ++ ++M+DE+H + S + Y + E++ + K++ ++ TP Sbjct: 1347 EYDFVMIDESHTMDASAMAFYCLVREYNFQGKIIKVSATP 1386
>RS26A_SCHPO (Q9UT56) 40S ribosomal protein S26-A| Length = 120 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +2 Query: 86 NKKGGRHVKFHTLITTYEVILKDKAVLSKIKWSYL-MVDEAHRLKNSEASLY 238 NK G H KF I + KDKA+ +W+ MV+ A SEAS+Y Sbjct: 11 NKHGRGHTKFVRCINCSRAVPKDKAIK---RWNIRNMVETAAIRDLSEASVY 59
>RPIA_PICTO (Q6L1K2) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 218 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = +2 Query: 221 SEASLYIALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKDTFVE 376 S A +I L KN L ITG P EEL F PV +N KD ++ Sbjct: 29 STAYYFIEGLSELVKNGLRITGIPTSKKSEEL--CRSFNIPVDYNIKDIDID 78
>ARGR_BACSK (Q5WF65) Arginine repressor| Length = 149 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 92 KGGRHVKFHTLITTYEVILKDKAV 163 KG RH+K +IT YE+ +D V Sbjct: 3 KGQRHIKIREIITNYEIETQDDLV 26
>XTH2_ARATH (Q9SV60) Putative xyloglucan endotransglucosylase/hydrolase protein| 2 precursor (EC 2.4.1.207) (At-XTH2) (XTH-2) Length = 292 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 32 YVGNRASREMCQQHEFFTNKKGGRHVKF 115 ++GNR + + Q F+N +GGR KF Sbjct: 111 FLGNRQGKPIAIQTNVFSNGQGGREQKF 138
>RUVB_SYNAS (Q2LRA8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 340 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = +2 Query: 101 RHVKFHTLITTYEVILKD---KAVLSKIK-WSYLMVDEAHRLKNS-EASLYIALLEF 256 R + F+ +T+ VI + A+L+ +K + L +DE HRL +S E LY A+ +F Sbjct: 76 REMGFNIKVTSGPVIERPGDLAAILTNLKDYDILFIDEIHRLPHSVEEILYPAMEDF 132
>YDJR_ECOLI (P76214) Hypothetical protein ydjR| Length = 191 Score = 24.6 bits (52), Expect(2) = 9.8 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -3 Query: 220 ILQTVGFINHKITPFD---F*KDGFVLKYHLISSYQSMEFYMPSTLLICK 80 +L++ NH + PF F D V+K L + SM+F + + L +CK Sbjct: 68 LLESADRFNHTLKPFQPFAFAADQ-VVKAKLTAGQMSMDFNIMTRLDVCK 116 Score = 21.2 bits (43), Expect(2) = 9.8 Identities = 7/14 (50%), Positives = 8/14 (57%) Frame = -2 Query: 65 DTSLCWHDFRHKLQ 24 D CW D RH L+ Sbjct: 153 DQGACWFDGRHTLR 166 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,936,514 Number of Sequences: 219361 Number of extensions: 979028 Number of successful extensions: 2218 Number of sequences better than 10.0: 169 Number of HSP's better than 10.0 without gapping: 2129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2159 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
