ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
2dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
3dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
4emb|BX548000.6| Zebrafish DNA sequence from clone CH211-199M8 in... 46 0.082
5emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3... 46 0.082
6emb|CT009651.1| Medicago truncatula chromosome 5 clone mte1-70c1... 46 0.082
7ref|XM_649902.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 42 1.3
8emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 42 1.3
9ref|XM_691530.1| PREDICTED: Danio rerio similar to KIAA1564 prot... 42 1.3
10ref|XM_683163.1| PREDICTED: Danio rerio similar to KIAA1564 prot... 42 1.3
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
12emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 i... 42 1.3
13gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P... 42 1.3
14gb|AC079678.1|AC079678 Arabidopsis thaliana chromosome 1 BAC F9E... 42 1.3
15emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, co... 42 1.3
16ref|NM_179785.1| Arabidopsis thaliana SYD (SPLAYED) AT2G28290 (S... 40 5.0
17ref|NM_179786.1| Arabidopsis thaliana SYD (SPLAYED) AT2G28290 (S... 40 5.0
18ref|NM_114905.1| Arabidopsis thaliana HR1 (HOMOLOG OF RPW8 1) AT... 40 5.0
19ref|XM_631201.1| Dictyostelium discoideum hypothetical protein (... 40 5.0
20ref|XM_474264.1| Oryza sativa (japonica cultivar-group), predic... 40 5.0
21gb|AC107634.8| Mus musculus chromosome 5, clone RP23-19G21, comp... 40 5.0
22gb|AC114818.4| Mus musculus BAC clone RP23-47O11 from 8, complet... 40 5.0
23gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, ... 40 5.0
24gb|AC162867.5| Mus musculus chromosome 8, clone RP24-363D7, comp... 40 5.0
25emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
26emb|AL133363.1|ATT20E23 Arabidopsis thaliana DNA chromosome 3, B... 40 5.0
27gb|AC165262.2| Mus musculus BAC clone RP23-89H5 from chromosome ... 40 5.0
28gb|AC093010.7| Homo sapiens 3 BAC RP11-553L6 (Roswell Park Cance... 40 5.0
29gb|AC182431.3| Pan troglodytes BAC clone CH251-185D5 from chromo... 40 5.0
30gb|AF247809.1| Arabidopsis thaliana putative chromatin remodelin... 40 5.0
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
32gb|AF273059.1|AF273059 Arabidopsis thaliana RESISTANCE TO POWDER... 40 5.0
33gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 5.0
34gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332... 40 5.0
35dbj|BS000078.1| Pan troglodytes chromosome 22 clone:PTB-017L22, ... 40 5.0
36dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07,... 40 5.0
37gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, compl... 40 5.0
38dbj|AK098957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
39dbj|AK073700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
40gb|AY927849.1| Arabidopsis thaliana SPLAYED splice variant mRNA,... 40 5.0
41emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.0
42dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.0
43gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, com... 40 5.0
44dbj|AP000705.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 5.0

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  196 bits (99), Expect = 4e-47
 Identities = 156/175 (89%)
 Strand = Plus / Minus

                                                                            
Query: 65       cagcagcatgagttctttacaaataagaagggtggacggcatgtaaaattccatactttg 124
                ||||||||||| || |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 27779983 cagcagcatgaattttttacaaataagaagggtggtcgacatgtaaaattccatacattg 27779924

                                                                            
Query: 125      ataactacttatgaggtgatacttaaggacaaagccgtcctttcaaaaatcaaatggagt 184
                ||||||||||||||||| ||||||||||||||||| | |||||| || ||||||||||  
Sbjct: 27779923 ataactacttatgaggtcatacttaaggacaaagctgccctttccaagatcaaatggaac 27779864

                                                                       
Query: 185      tatcttatggttgatgaagcccaccgtttgaagaattctgaagcatcactgtata 239
                ||||||||||| |||||||| || || || ||||||| ||||||||| |||||||
Sbjct: 27779863 tatcttatggtcgatgaagctcatcgattaaagaattgtgaagcatcgctgtata 27779809



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 5        tggctacctgacatgaatgttgtaatttatgtcggaaatcgtgccagcagagag 58
                |||||||||||||||||||||||  ||||||| ||||||||||| |||||||||
Sbjct: 27780671 tggctacctgacatgaatgttgtggtttatgtgggaaatcgtgctagcagagag 27780618



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 324      tacttcatttccttgatccagtcaaatttaacagcaaggatacttttgttgagag 378
                ||||||||||||||||||||   ||||| |||||||||||||  |||||||||||
Sbjct: 27779471 tacttcatttccttgatccatctaaattcaacagcaaggatatatttgttgagag 27779417



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 254      ttcagcaccaaaaataagctgctaataactgggacccctttgcagaacagtgttgaagag 313
                |||||||| || |||||||| || || || |||||||| ||||| ||||| |||||||||
Sbjct: 27779711 ttcagcactaagaataagcttctcatcaccgggaccccattgcaaaacagcgttgaagag 27779652

                  
Query: 314      ct 315
                ||
Sbjct: 27779651 ct 27779650



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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496C02
          Length = 148419

 Score =  196 bits (99), Expect = 4e-47
 Identities = 156/175 (89%)
 Strand = Plus / Minus

                                                                         
Query: 65    cagcagcatgagttctttacaaataagaagggtggacggcatgtaaaattccatactttg 124
             ||||||||||| || |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 72362 cagcagcatgaattttttacaaataagaagggtggtcgacatgtaaaattccatacattg 72303

                                                                         
Query: 125   ataactacttatgaggtgatacttaaggacaaagccgtcctttcaaaaatcaaatggagt 184
             ||||||||||||||||| ||||||||||||||||| | |||||| || ||||||||||  
Sbjct: 72302 ataactacttatgaggtcatacttaaggacaaagctgccctttccaagatcaaatggaac 72243

                                                                    
Query: 185   tatcttatggttgatgaagcccaccgtttgaagaattctgaagcatcactgtata 239
             ||||||||||| |||||||| || || || ||||||| ||||||||| |||||||
Sbjct: 72242 tatcttatggtcgatgaagctcatcgattaaagaattgtgaagcatcgctgtata 72188



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                   
Query: 5     tggctacctgacatgaatgttgtaatttatgtcggaaatcgtgccagcagagag 58
             |||||||||||||||||||||||  ||||||| ||||||||||| |||||||||
Sbjct: 73050 tggctacctgacatgaatgttgtggtttatgtgggaaatcgtgctagcagagag 72997



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 324   tacttcatttccttgatccagtcaaatttaacagcaaggatacttttgttgagag 378
             ||||||||||||||||||||   ||||| |||||||||||||  |||||||||||
Sbjct: 71850 tacttcatttccttgatccatctaaattcaacagcaaggatatatttgttgagag 71796



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 254   ttcagcaccaaaaataagctgctaataactgggacccctttgcagaacagtgttgaagag 313
             |||||||| || |||||||| || || || |||||||| ||||| ||||| |||||||||
Sbjct: 72090 ttcagcactaagaataagcttctcatcaccgggaccccattgcaaaacagcgttgaagag 72031

               
Query: 314   ct 315
             ||
Sbjct: 72030 ct 72029



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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1477_F01
          Length = 158792

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                     
Query: 324    tacttcatttccttgatccagtcaaatttaacagcaaggatacttttgttgagag 378
              ||||||||||||||||||||   ||||| |||||||||||||  |||||||||||
Sbjct: 158573 tacttcatttccttgatccatctaaattcaacagcaaggatatatttgttgagag 158519



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 284    gggacccctttgcagaacagtgttgaagagct 315
              |||||||| ||||| ||||| |||||||||||
Sbjct: 158783 gggaccccattgcaaaacagcgttgaagagct 158752



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>emb|BX548000.6| Zebrafish DNA sequence from clone CH211-199M8 in linkage group 11,
             complete sequence
          Length = 216767

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 267   ataagctgctaataactgggacccctttgcagaacagtgttgaagagcttt 317
             ||||||||||  | ||||| |||||||||||||||| | | ||||||||||
Sbjct: 22089 ataagctgctcttgactggaacccctttgcagaacaatctggaagagcttt 22139



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>emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3, COMPLETE SEQUENCE
          Length = 211224

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                         
Query: 257    agcaccaaaaataagctgctaataactgggacccctttgcagaacagtgttgaagagct 315
              |||||||| |||||| |||| || || || || ||||| || |||||||||||||||||
Sbjct: 202052 agcaccaagaataagttgctcatcaccggtactcctttacaaaacagtgttgaagagct 202110



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>emb|CT009651.1| Medicago truncatula chromosome 5 clone mte1-70c15, COMPLETE SEQUENCE
          Length = 110880

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 257   agcaccaaaaataagctgctaataactgggacccctttgcagaacagtgttgaagagct 315
             |||||||| |||||| |||| || || || || ||||| || |||||||||||||||||
Sbjct: 93510 agcaccaagaataagttgctcatcaccggtactcctttacaaaacagtgttgaagagct 93452



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>ref|XM_649902.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
            (39.t00016) partial mRNA
          Length = 6105

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 171  aaatcaaatggagttatctta 191
            |||||||||||||||||||||
Sbjct: 3050 aaatcaaatggagttatctta 3030



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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 51     gcagagagatgtgtcagcagcatga 75
              |||||||||||| ||||||||||||
Sbjct: 145939 gcagagagatgtttcagcagcatga 145963



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>ref|XM_691530.1| PREDICTED: Danio rerio similar to KIAA1564 protein (LOC568214), mRNA
          Length = 7560

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 195  ttgatgaagcccaccgtttgaagaa 219
            |||||||||| ||||||||||||||
Sbjct: 2960 ttgatgaagctcaccgtttgaagaa 2984



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>ref|XM_683163.1| PREDICTED: Danio rerio similar to KIAA1564 protein (LOC559791), mRNA
          Length = 7569

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 195  ttgatgaagcccaccgtttgaagaa 219
            |||||||||| ||||||||||||||
Sbjct: 2969 ttgatgaagctcaccgtttgaagaa 2993



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 51       gcagagagatgtgtcagcagcatga 75
                |||||||||||| ||||||||||||
Sbjct: 24767250 gcagagagatgtttcagcagcatga 24767274



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>emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 in linkage group 2,
              complete sequence
          Length = 170771

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 195    ttgatgaagcccaccgtttgaagaa 219
              |||||||||| ||||||||||||||
Sbjct: 146799 ttgatgaagctcaccgtttgaagaa 146823



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>gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P9 genomic sequence, complete
            sequence
          Length = 108387

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 139  ggtgatacttaaggacaaagc 159
            |||||||||||||||||||||
Sbjct: 2398 ggtgatacttaaggacaaagc 2378



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>gb|AC079678.1|AC079678 Arabidopsis thaliana chromosome 1 BAC F9E11 genomic sequence, complete
             sequence
          Length = 39601

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 139   ggtgatacttaaggacaaagc 159
             |||||||||||||||||||||
Sbjct: 36474 ggtgatacttaaggacaaagc 36454



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>emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, complete sequence
          Length = 205118

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 195    ttgatgaagcccaccgtttgaagaa 219
              |||||||||| ||||||||||||||
Sbjct: 178329 ttgatgaagctcaccgtttgaagaa 178353



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>ref|NM_179785.1| Arabidopsis thaliana SYD (SPLAYED) AT2G28290 (SYD) transcript variant
            AT2G28290.1 mRNA, complete cds
          Length = 10839

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  taactgggacccctttgcagaaca 302
            ||||||||||||| ||||||||||
Sbjct: 2846 taactgggaccccattgcagaaca 2869



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>ref|NM_179786.1| Arabidopsis thaliana SYD (SPLAYED) AT2G28290 (SYD) transcript variant
            AT2G28290.2 mRNA, complete cds
          Length = 10837

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  taactgggacccctttgcagaaca 302
            ||||||||||||| ||||||||||
Sbjct: 2846 taactgggaccccattgcagaaca 2869



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>ref|NM_114905.1| Arabidopsis thaliana HR1 (HOMOLOG OF RPW8 1) AT3G50450 (HR1) mRNA,
           complete cds
          Length = 570

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 caaatggagttatcttatgg 194
           ||||||||||||||||||||
Sbjct: 151 caaatggagttatcttatgg 132



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>ref|XM_631201.1| Dictyostelium discoideum hypothetical protein (DDB0229802), partial
           mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 ttttggagttcagcaccaaa 265
           ||||||||||||||||||||
Sbjct: 440 ttttggagttcagcaccaaa 421



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>ref|XM_474264.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 gtttgaagaattctgaagca 229
           ||||||||||||||||||||
Sbjct: 241 gtttgaagaattctgaagca 222



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>gb|AC107634.8| Mus musculus chromosome 5, clone RP23-19G21, complete sequence
          Length = 201345

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    catgagttctttacaaataa 90
             ||||||||||||||||||||
Sbjct: 74616 catgagttctttacaaataa 74597



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>gb|AC114818.4| Mus musculus BAC clone RP23-47O11 from 8, complete sequence
          Length = 100405

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tcactgtatattgctctttt 249
             ||||||||||||||||||||
Sbjct: 71893 tcactgtatattgctctttt 71912



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>gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, complete sequence
          Length = 163635

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     acatgaatgttgtaatttat 34
              ||||||||||||||||||||
Sbjct: 158950 acatgaatgttgtaatttat 158931



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>gb|AC162867.5| Mus musculus chromosome 8, clone RP24-363D7, complete sequence
          Length = 187070

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tcactgtatattgctctttt 249
             ||||||||||||||||||||
Sbjct: 62685 tcactgtatattgctctttt 62704



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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
            complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  gtttgaagaattctgaagca 229
            ||||||||||||||||||||
Sbjct: 6766 gtttgaagaattctgaagca 6747



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>emb|AL133363.1|ATT20E23 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23
          Length = 83513

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   caaatggagttatcttatgg 194
             ||||||||||||||||||||
Sbjct: 12522 caaatggagttatcttatgg 12503



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>gb|AC165262.2| Mus musculus BAC clone RP23-89H5 from chromosome 14, complete sequence
          Length = 201412

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ttgctcttttggagttcagc 259
             ||||||||||||||||||||
Sbjct: 85425 ttgctcttttggagttcagc 85406



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>gb|AC093010.7| Homo sapiens 3 BAC RP11-553L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161077

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   catttccttgatccagtcaa 348
             ||||||||||||||||||||
Sbjct: 29617 catttccttgatccagtcaa 29598



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>gb|AC182431.3| Pan troglodytes BAC clone CH251-185D5 from chromosome 19, complete
              sequence
          Length = 159441

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 109    aaaattccatactttgataactacttat 136
              ||||||||||| ||| ||||||||||||
Sbjct: 140491 aaaattccataattttataactacttat 140464



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>gb|AF247809.1| Arabidopsis thaliana putative chromatin remodeling protein SYD
            (SPLAYED) mRNA, complete cds
          Length = 10972

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  taactgggacccctttgcagaaca 302
            ||||||||||||| ||||||||||
Sbjct: 2846 taactgggaccccattgcagaaca 2869



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 210      gtttgaagaattctgaagca 229
                ||||||||||||||||||||
Sbjct: 34095384 gtttgaagaattctgaagca 34095365



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>gb|AF273059.1|AF273059 Arabidopsis thaliana RESISTANCE TO POWDERY MILDEW8 (RPW8) locus,
             complete cds
          Length = 13889

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   caaatggagttatcttatgg 194
             ||||||||||||||||||||
Sbjct: 12682 caaatggagttatcttatgg 12701



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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    acatgaatgttgtaatttat 34
             ||||||||||||||||||||
Sbjct: 41678 acatgaatgttgtaatttat 41697



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>gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332E11, complete sequence
          Length = 179393

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 109   aaaattccatactttgataactacttat 136
             ||||||||||| ||| ||||||||||||
Sbjct: 19737 aaaattccataattttataactacttat 19710



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>dbj|BS000078.1| Pan troglodytes chromosome 22 clone:PTB-017L22, map 22, complete
             sequences
          Length = 161914

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 282   ctgggacccctttgcagaacagtgttgaagag 313
             |||||||  |||||||||||| ||||||||||
Sbjct: 20494 ctgggacatctttgcagaacattgttgaagag 20525



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>dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07, map 22, complete
              sequences
          Length = 186185

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 282    ctgggacccctttgcagaacagtgttgaagag 313
              |||||||  |||||||||||| ||||||||||
Sbjct: 149886 ctgggacatctttgcagaacattgttgaagag 149917



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>gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, complete sequence
          Length = 167116

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    ttgctcttttggagttcagc 259
              ||||||||||||||||||||
Sbjct: 147593 ttgctcttttggagttcagc 147612



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>dbj|AK098957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067B02, full
           insert sequence
          Length = 2714

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 gtttgaagaattctgaagca 229
           ||||||||||||||||||||
Sbjct: 265 gtttgaagaattctgaagca 284



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>dbj|AK073700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058I11, full
           insert sequence
          Length = 2717

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 gtttgaagaattctgaagca 229
           ||||||||||||||||||||
Sbjct: 289 gtttgaagaattctgaagca 308



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>gb|AY927849.1| Arabidopsis thaliana SPLAYED splice variant mRNA, complete cds,
            alternatively spliced
          Length = 10879

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  taactgggacccctttgcagaaca 302
            ||||||||||||| ||||||||||
Sbjct: 2846 taactgggaccccattgcagaaca 2869



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>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gtttgaagaattctgaagca 229
             ||||||||||||||||||||
Sbjct: 12436 gtttgaagaattctgaagca 12417



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>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 282   ctgggacccctttgcagaacagtgttgaagag 313
             |||||||  |||||||||||| ||||||||||
Sbjct: 31904 ctgggacatctttgcagaacattgttgaagag 31935



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>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence
          Length = 233632

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     cagcagagagatgtgtcagc 68
              ||||||||||||||||||||
Sbjct: 142378 cagcagagagatgtgtcagc 142397



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>dbj|AP000705.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B745D19,
              LL56-APP region, complete sequence
          Length = 145869

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 282    ctgggacccctttgcagaacagtgttgaagag 313
              |||||||  |||||||||||| ||||||||||
Sbjct: 132378 ctgggacatctttgcagaacattgttgaagag 132409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,234,529
Number of Sequences: 3902068
Number of extensions: 4234529
Number of successful extensions: 71670
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71536
Number of HSP's gapped (non-prelim): 134
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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