ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YBLE_SCHPO (Q10342) Hypothetical protein C106.14c in chromosome II 32 0.31
2YG58_YEAST (P53313) Hypothetical 86.6 kDa protein in PFK1-TDS4 i... 30 1.5
3DGCR6_HUMAN (Q14129) DGCR6 protein (DiGeorge syndrome critical r... 30 1.5
4YZR3_ARATH (Q8GZ43) RanBP2-type zinc-finger protein At1g67325 28 4.4
5DGCR6_MOUSE (O35347) DGCR6 protein (DiGeorge syndrome critical r... 28 5.8

>YBLE_SCHPO (Q10342) Hypothetical protein C106.14c in chromosome II|
          Length = 719

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 162 HSLPALQAKMKRDPEGYETELRQLQRHFESS--VFLFRQQSALS 287
           ++LP LQ  +K+DP+ Y  E  Q   H+E++  +FL    S +S
Sbjct: 12  NNLPHLQHLVKKDPKSYREEFLQQWNHYETAREIFLVNPSSDIS 55



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>YG58_YEAST (P53313) Hypothetical 86.6 kDa protein in PFK1-TDS4 intergenic|
           region
          Length = 767

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 177 LQAKMKRDPEGYETELRQLQRHFES 251
           LQ  +KRDPE Y+ E  Q   H+ES
Sbjct: 17  LQNLVKRDPESYQEEFLQQYAHYES 41



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>DGCR6_HUMAN (Q14129) DGCR6 protein (DiGeorge syndrome critical region 6)|
          Length = 220

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 162 HSLPALQAKMKRDPEGYETELRQLQRHFESSVFL 263
           H+LP LQA  +R+ E  E  +R+ QR  +  + L
Sbjct: 110 HNLPVLQAAQQRELEAVEHRIREEQRAMDQKIVL 143



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>YZR3_ARATH (Q8GZ43) RanBP2-type zinc-finger protein At1g67325|
          Length = 288

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 295 EDGDSADCCRKRNTEDSKWRCSWRSSVSYPSGSR 194
           + G S+D   K+N  +  W+C    +++YP  S+
Sbjct: 227 QQGGSSDKISKQNAPEGSWKCDNCGNINYPFRSK 260



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>DGCR6_MOUSE (O35347) DGCR6 protein (DiGeorge syndrome critical region 6|
           homolog)
          Length = 198

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 162 HSLPALQAKMKRDPEGYETELRQLQRHFESSVFL 263
           H+LP LQA  +R+ E  E  +R+ Q+  +  + L
Sbjct: 110 HNLPVLQAAQQRELEAMEHRIREEQQAMDRKIVL 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,411,227
Number of Sequences: 219361
Number of extensions: 318002
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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