>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 845

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 263 TTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSGRKP 99
           +TTS G G    P +G  LRP   +  P G  G  +    +   P GD     KP
Sbjct: 492 STTSSGGGTGPHPPSGTTLRPP-TSSTPGGSPGAENSTSHQPATPGGDTAQTPKP 545

>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)|
          Length = 319

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -2

Query: 381 RAKLKSTCNFGTKSR*IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXXXXAQA 202
           R K +S   FGT+   +   V  VD++  P K  T F+ D++                + 
Sbjct: 70  RMKAQSV-KFGTEV--VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRL 126

Query: 201 GHGGRETLWER 169
           G  G ET W+R
Sbjct: 127 GLPGEETYWQR 137

>METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058W (EC|
           2.5.1.48) (O-succinylhomoserine (thiol)-lyase)
          Length = 575

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 280 DTLKRFNGYVNGTHFTLNLS----ALRSKIASAFKFGPDADFI 396
           D+LK F G  NGT+FTL       A  S++    KFG D + I
Sbjct: 502 DSLKVFKGPSNGTNFTLACPYVHLAHHSELEEVSKFGADPNII 544

>CACB2_MOUSE (Q8CC27) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 655

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 290 LSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPC 177
           L +SP  TL + SQGS  D RP          A E+PC
Sbjct: 482 LPLSP--TLASNSQGSQGDQRPDRSAPRSASQAEEEPC 517

>RS5_SYNPX (Q7U4I4) 30S ribosomal protein S5|
          Length = 215

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 266 LTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGD 120
           +T +S  S P+A P            ++   RGGGR +R + R   RGD
Sbjct: 1   MTDSSPQSNPNAVPGAADVPAAAEGQQQEQRRGGGRGERGDRRGGRRGD 49

>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase|
           (EC 3.1.3.16) (TFIIF-associating CTD phosphatase)
          Length = 961

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 239 PDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSG 108
           PD  P  GG  + +   +  CG G G +DR E     +  E+SG
Sbjct: 524 PDKEPELGG--QEEGERDGLCGLGNGCADRKEAETESQNSELSG 565

>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 20)
          Length = 726

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 306 CQRNTLHFESICSSFQNCKCF*VW 377
           CQR T +   IC++ Q+C C   W
Sbjct: 635 CQRKTCNMRGICNNKQHCHCNHEW 658

>NRBP_PONPY (Q5RBH9) Nuclear receptor-binding protein|
          Length = 535

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129
           L SVSP +T +TTS  S  +   S   +   ++  E PCGR   R + V +R  P
Sbjct: 27  LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77

>NRBP_MOUSE (Q99J45) Nuclear receptor-binding protein (MLF1 adapter molecule)|
           (HLS7-interacting protein kinase)
          Length = 535

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129
           L SVSP +T +TTS  S  +   S   +   ++  E PCGR   R + V +R  P
Sbjct: 27  LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77

>NRBP_MACFA (Q4R8X0) Nuclear receptor-binding protein|
          Length = 535

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129
           L SVSP +T +TTS  S  +   S   +   ++  E PCGR   R + V +R  P
Sbjct: 27  LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77

>NRBP_HUMAN (Q9UHY1) Nuclear receptor-binding protein|
          Length = 535

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129
           L SVSP +T +TTS  S  +   S   +   ++  E PCGR   R + V +R  P
Sbjct: 27  LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77

>Y126_METJA (Q57590) Hypothetical protein MJ0126|
          Length = 98

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 399 ENEVSIRAKLKSTCNFGTKSR*IQSEVCSVDIAI---EPLKCVTIFDLDD 259
           + E+  + K+KS   FG+ +R  Q+E   +DI I   EP+  + + +L++
Sbjct: 15  KKELKEKYKVKSIAIFGSYARNEQTETSDIDILIDYYEPISLLKLIELEN 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,220,693
Number of Sequences: 219361
Number of extensions: 810606
Number of successful extensions: 2783
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2783
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)