ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14f04 |
|---|---|
| Clone Library Name | barley_pub |
>HLXB9_MOUSE (Q9QZW9) Homeobox protein HB9| Length = 404 Score = 34.7 bits (78), Expect = 0.055 Identities = 24/59 (40%), Positives = 28/59 (47%) Frame = -2 Query: 293 PGDHSRSTEERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAPTQHSSP 117 PGD R+ P RL AA + L K G + AG GGGA A G G P H+ P Sbjct: 70 PGDRLRAESPSPPRLLAAHCALLPKPGFLGAGG-GGGA--------AGGPGTPHHHAHP 119
>HLXB9_HUMAN (P50219) Homeobox protein HB9| Length = 403 Score = 32.7 bits (73), Expect = 0.21 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = -2 Query: 293 PGDHSRSTEERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAPTQHSSP 117 P D R+ P RL AA + L K G + AG GGG G G P H+ P Sbjct: 69 PADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGT--------GGGHGGPHHHAHP 119
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 32.0 bits (71), Expect = 0.36 Identities = 23/85 (27%), Positives = 42/85 (49%) Frame = -2 Query: 281 SRSTEERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAPTQHSSPPETKW 102 +R+ E + AA ++ ++G A + GG L E D +P +HSSP + Sbjct: 1065 ARAGAEEGGQGQAAGGQQVAEQGPEPAED--GGHLASEPEV-QPSDRSPLEHSSPEKEAP 1121 Query: 101 NPRSLAPPHQSLSSQSHLIWQTERE 27 +P PP ++++++SH + RE Sbjct: 1122 SPEKTLPPQKTVAAESHEKVPSSRE 1146
>CDON_RAT (O35158) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1256 Score = 30.4 bits (67), Expect = 1.0 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 98 PRSLAPPHQSLSSQSHLIWQTEREGGMEI 12 P L+PP + L+W+T R+GGM I Sbjct: 577 PNILSPPQTHMPDTYTLVWRTGRDGGMPI 605
>TGDS_HUMAN (O95455) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 350 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +3 Query: 204 THPPLLLQPASCCSTESYWPLFRGPGVITRLLSAYPLHR 320 T+P + A+ C +SYW ++ P VITR + Y H+ Sbjct: 163 TNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQ 201
>TGDS_MOUSE (Q8VDR7) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 355 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +3 Query: 204 THPPLLLQPASCCSTESYWPLFRGPGVITRLLSAYPLHR 320 T+P + A+ C +SYW ++ P VITR + Y H+ Sbjct: 163 TNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQ 201
>APT1_YEAST (P49435) Adenine phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT 1)| Length = 187 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 249 ESYWPLFRGPGVITRLLSAYPLH 317 E + P+FR PG+ +L+ A+ LH Sbjct: 28 EDFLPIFRNPGLFQKLIDAFKLH 50
>CDON_MOUSE (Q32MD9) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1250 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 98 PRSLAPPHQSLSSQSHLIWQTEREGGMEI 12 P L+PP + +L+W+ R+GGM I Sbjct: 576 PNILSPPQTHMPDTYNLVWRAGRDGGMPI 604
>PBPA_ECOLI (P02918) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:| Penicillin-insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)] Length = 850 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%) Frame = +3 Query: 243 STESYWPLFRGPGVITRLLSAYPLHRK------MSVAKKDEVCGHPLGLRLGEPA 389 S++ W GPGV+T + + HR+ S A KD++ G+ G + +PA Sbjct: 722 SSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPA 776
>VS48_TBRVL (P22050) Satellite RNA 48 kDa protein| Length = 424 Score = 28.9 bits (63), Expect = 3.0 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = -2 Query: 188 GGALKRERVA*ADGD-GAPTQHSSPPETKWNPRSLAPPHQSLSSQ 57 GG KR+ ADG G P+ + P KW +++A P Q S+ Sbjct: 54 GGGRKRK----ADGSQGRPSNNPGRPSRKWTEKTIAAPPQGFFSR 94
>SYH_AZOSE (Q5P7B4) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 438 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -2 Query: 266 ERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAP 135 E+ RL+ AA L G CGGG+ K ++ AD GAP Sbjct: 343 EQAQRLAFRAAEALRSHGFAVLMHCGGGSFK-SQMKKADASGAP 385
>DPOD3_MOUSE (Q9EQ28) DNA polymerase delta subunit 3 (DNA polymerase delta| subunit p66) Length = 462 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = -2 Query: 269 EERPVRLSAAAASRLEKKGRVCAGECGGGALKRERVA*ADGDGAPTQHSS---PPETKWN 99 E R V +++A + KG V + G A+ + +V D + A + + PP + Sbjct: 212 EAREVTSASSAGGKAPGKGSVMSNFFGKAAMNKLKVN-LDSEQAVKEEKTVEQPPVSVTE 270 Query: 98 PRSLAPPHQSLSSQ 57 P+ APP Q SS+ Sbjct: 271 PKLAAPPAQKKSSR 284
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Frame = +3 Query: 183 PAAALACTHPPLLLQPASCCSTESYWPLFRG---PGVITRLLSAYPLHRKMSVAKKDEVC 353 PA + P L +S C + + +G P ++TR+ S +++ + + Sbjct: 3997 PARGVPQQQHPQQLSHSSPCKPNTLVSVNQGVQPPAILTRVGSHSQPNQQQQLPHQQSSS 4056 Query: 354 GHPLGLRLGEPAAGVPIK 407 GHP +L P A +P++ Sbjct: 4057 GHPHQKQLSSPGANLPLQ 4074
>TOP3_CAEEL (O61660) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)| Length = 759 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = -2 Query: 251 LSAAAASRLEKKGRVCAGECG-GGALKRERVA*ADGDGAPTQHSSPPETKWNPRSLAPPH 75 LS + L+K + G G GG R G G PT +PP+ PR PP Sbjct: 600 LSQSLQRYLDKNNQAGGGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRG-RPPR 658 Query: 74 QSLS 63 +S+S Sbjct: 659 KSIS 662
>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)| Length = 1094 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/54 (25%), Positives = 25/54 (46%) Frame = -2 Query: 176 KRERVA*ADGDGAPTQHSSPPETKWNPRSLAPPHQSLSSQSHLIWQTEREGGME 15 K+E A G P SPP+ + L + + LI++++R+G +E Sbjct: 1003 KKEAAADTSGREEPPTPKSPPKARRQQMDLISELKRKQQKEPLIYESDRDGAIE 1056
>CDON_HUMAN (Q4KMG0) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1287 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = -2 Query: 146 DGAPTQHSSPPETKWNPRSLAPPHQSLSSQSHLIWQTEREGGMEI 12 + AP +++S P L+PP +L+W+ ++GG+ I Sbjct: 564 ESAPEKNASGISVPDAPIILSPPQTHTPDTYNLVWRAGKDGGLPI 608
>TSC2_RAT (P49816) Tuberin (Tuberous sclerosis 2 homolog protein)| Length = 1809 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -2 Query: 293 PGDHSRSTEERPVRLSAAAASRLEKKGRVCAGECGGG 183 PG H R T+E P +L + A ++ + R GG Sbjct: 1098 PGTHVRQTKEAPAKLESQAGQQVSRGARDRVRSMSGG 1134
>3MGH_COREF (Q8FUA2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 190 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +3 Query: 273 GPGVITRLLSAYPLHRKMSVAKKDEVCGHPLGLRLGEPAAGVPI 404 GPG + +Y +HR ++A E G + LR GE AG I Sbjct: 59 GPGGHMYIYISYGIHRAGNIACAPEGVGQGVLLRAGEVVAGEDI 102
>FMNL_HUMAN (O95466) Formin-like 1 protein (Formin-like protein) (Leukocyte| formin) (CLL-associated antigen KW-13) Length = 1100 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = -2 Query: 182 ALKRERVA*ADGDGAPTQHSSPPETKWNPRSLAPPHQSLSSQSHLIWQTEREGGME 15 A +E A G G P SPP+ + L + + LI++++R+G +E Sbjct: 1011 AAAQEAGADTPGKGEPPAPKSPPKARRPQMDLISELKRRQQKEPLIYESDRDGAIE 1066
>VE2_HPV22 (P50768) Regulatory protein E2| Length = 436 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -2 Query: 281 SRSTEERPVRLSAAAASRLEKKGRVCAGECGGGALKRER 165 SRSTE+R R + + SR + G GGG L R R Sbjct: 269 SRSTEQRGGRATRRSLSRESAESPRRGGRGGGGPLTRSR 307
>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase| Length = 391 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -1 Query: 126 QQPSGDEMEPSVARSSAPVPLQPI 55 +Q SG + E ++ + AP+PLQP+ Sbjct: 230 RQMSGLDKEETIRKEGAPIPLQPL 253
>SEC6_SCHPO (O74846) Exocyst complex component sec6| Length = 730 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 388 AGSPNRSPSGCPQTSSFLATDILRCSG*ADNNLVIT 281 +G+P P G + +A D L+C+G DN L+ T Sbjct: 464 SGNPESVPPGLMEYLLAVANDNLKCAGFMDNTLLNT 499
>CEL1_AGABI (Q00023) Cellulose-growth-specific protein precursor| Length = 320 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +1 Query: 136 GAPSPSAHATRSLFNAPPPHSPAHTLP 216 G+P+ + H T + +PPP S T+P Sbjct: 261 GSPTTTPHTTTPITTSPPPTSTPGTIP 287
>EX7L_CAUCR (Q9A649) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 505 Score = 27.3 bits (59), Expect = 8.8 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 10/73 (13%) Frame = -2 Query: 266 ERPVRLSAAAASRLEKKGRVCAGECGGGALKRERV----------A*ADGDGAPTQHSSP 117 ERP+ L A L +KG + ERV A DG+G P + Sbjct: 430 ERPLELGFA----LVRKGDGTLARSAADLVSGERVNLKFKSGDRDAVIDGEGGPAPAPTA 485 Query: 116 PETKWNPRSLAPP 78 P K P+ APP Sbjct: 486 PAPKPRPKPAAPP 498
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/30 (36%), Positives = 13/30 (43%) Frame = -2 Query: 137 PTQHSSPPETKWNPRSLAPPHQSLSSQSHL 48 P QH PP T P + PP + HL Sbjct: 1951 PIQHQMPPMTPMAPMGMNPPPMTRGPSGHL 1980 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,929,107 Number of Sequences: 219361 Number of extensions: 1514133 Number of successful extensions: 5967 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 5561 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5962 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
