>ref|XM_493838.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3060

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                       
Query: 324 atgtcggtagccaagaaggatgaggtttgcgggcatccgcttggactgcgattgggtgag 383
           |||||||||||||||||||| ||||||||| | |||| ||| || | |||||||| ||||
Sbjct: 1   atgtcggtagccaagaaggaagaggtttgcagtcatcggctcgggccgcgattggatgag 60

                                      
Query: 384 ccggctgctggtgttcccattaagaaa 410
           ||||| |  || || ||||||||||||
Sbjct: 61  ccggcggtcggcgtgcccattaagaaa 87

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 321     aagatgtcggtagccaagaaggatgaggt 349
               ||||||||||||||||||||||| |||||
Sbjct: 9656851 aagatgtcggtagccaagaaggaagaggt 9656823

>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
             sequence
          Length = 165113

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 321   aagatgtcggtagccaagaaggatgaggt 349
             ||||||||||||||||||||||| |||||
Sbjct: 77750 aagatgtcggtagccaagaaggaagaggt 77722

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 321     aagatgtcggtagccaagaaggatgaggt 349
               ||||||||||||||||||||||| |||||
Sbjct: 9654972 aagatgtcggtagccaagaaggaagaggt 9654944

>gb|AC104930.9| Mus musculus chromosome 7, clone RP24-224C21, complete sequence
          Length = 156052

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 198   gcctgcacacaccctccccttc 219
             ||||||||||||||||||||||
Sbjct: 58193 gcctgcacacaccctccccttc 58214

>gb|AC114678.20| Mus musculus chromosome 10, clone RP24-213L12, complete sequence
          Length = 180079

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 15    ctccatccctccctctcgctcg 36
             ||||||||||||||||||||||
Sbjct: 28164 ctccatccctccctctcgctcg 28185

>gb|AC167719.2| Mus musculus BAC clone RP24-285I8 from chromosome 10, complete sequence
          Length = 180573

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 15    ctccatccctccctctcgctcg 36
             ||||||||||||||||||||||
Sbjct: 45877 ctccatccctccctctcgctcg 45856

>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete
            sequence
          Length = 187418

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 198  gcctgcacacaccctccccttc 219
            ||||||||||||||||||||||
Sbjct: 9031 gcctgcacacaccctccccttc 9010

>gb|AC124359.3| Mus musculus BAC clone RP24-495G2 from chromosome 1, complete sequence
          Length = 174750

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 15    ctccatccctccctctcgctcggtctgcc 43
             |||| |||||||||||| |||||||||||
Sbjct: 57484 ctccttccctccctctctctcggtctgcc 57512

>emb|AL160280.10| Human DNA sequence from clone RP11-66O21 on chromosome 9, complete
             sequence
          Length = 109031

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   gcctgcacacaccctcccctt 218
             |||||||||||||||||||||
Sbjct: 38688 gcctgcacacaccctcccctt 38708

>gb|AC147475.3| Mus musculus BAC clone RP23-161B8 from 1, complete sequence
          Length = 186580

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 15     ctccatccctccctctcgctcggtctgcc 43
              |||| |||||||||||| |||||||||||
Sbjct: 168480 ctccttccctccctctctctcggtctgcc 168508

>ref|XM_874222.1| PREDICTED: Bos taurus similar to protein kinase, DNA-activated,
            catalytic polypeptide, transcript variant 7 (LOC512740),
            mRNA
          Length = 13274

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  ctccccttcttctccagcct 230
            ||||||||||||||||||||
Sbjct: 5089 ctccccttcttctccagcct 5108

>ref|XM_864754.1| PREDICTED: Bos taurus similar to protein kinase, DNA-activated,
            catalytic polypeptide, transcript variant 5 (LOC512740),
            mRNA
          Length = 13256

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  ctccccttcttctccagcct 230
            ||||||||||||||||||||
Sbjct: 5089 ctccccttcttctccagcct 5108

>ref|XM_874041.1| PREDICTED: Bos taurus similar to protein kinase, DNA-activated,
            catalytic polypeptide, transcript variant 6 (LOC512740),
            mRNA
          Length = 13166

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  ctccccttcttctccagcct 230
            ||||||||||||||||||||
Sbjct: 5089 ctccccttcttctccagcct 5108

>ref|XM_590310.2| PREDICTED: Bos taurus similar to protein kinase, DNA-activated,
            catalytic polypeptide, transcript variant 4 (LOC512740),
            mRNA
          Length = 13259

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  ctccccttcttctccagcct 230
            ||||||||||||||||||||
Sbjct: 5089 ctccccttcttctccagcct 5108

>gb|AC125235.3| Mus musculus BAC clone RP23-23D1 from chromosome 8, complete sequence
          Length = 191753

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    tgctgtgctgagtgggtgcc 141
              ||||||||||||||||||||
Sbjct: 162632 tgctgtgctgagtgggtgcc 162613

>ref|XM_847168.1| PREDICTED: Canis familiaris similar to melanoma-derived leucine
            zipper, extra-nuclear factor (LOC609825), mRNA
          Length = 2991

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  gcctgctagctgctgcagca 246
            ||||||||||||||||||||
Sbjct: 1899 gcctgctagctgctgcagca 1880

>gb|AC132366.4| Mus musculus BAC clone RP23-461N12 from chromosome 7, complete sequence
          Length = 183964

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     tggctggagagggactggtg 77
              ||||||||||||||||||||
Sbjct: 176110 tggctggagagggactggtg 176091

>gb|AC125348.3| Mus musculus BAC clone RP23-377H20 from chromosome 7, complete sequence
          Length = 188610

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tggctggagagggactggtg 77
             ||||||||||||||||||||
Sbjct: 27920 tggctggagagggactggtg 27901

>emb|AL355535.14| Human DNA sequence from clone RP11-494N1 on chromosome 9 Contains the
            5' end of the GNA14 gene for guanine nucleotide binding
            protein (G protein) alpha 14, the 3' end of the GNAQ gene
            for guanine nucleotide binding protein (G protein) q
            polypeptide and two CpG islands, complete sequence
          Length = 186658

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  gagggctgctgtgctgagtg 135
            ||||||||||||||||||||
Sbjct: 9773 gagggctgctgtgctgagtg 9792

>emb|AL354869.11| Human DNA sequence from clone RP11-600P1 on chromosome 13 Contains a heat
              shock 60kDa protein 1 (chaperonin) (HSPD1) pseudogene, a
              novel gene and a ribosomal protein L21 (RPL21) pseudogene,
              complete sequence
          Length = 197634

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    agccaagaaggatgaggttt 351
              ||||||||||||||||||||
Sbjct: 142539 agccaagaaggatgaggttt 142558

>emb|AJ001038.1|MMMPROT Mus musculus mRNA for M-protein
          Length = 5074

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tgctgtgctgagtgggtgcc 141
            ||||||||||||||||||||
Sbjct: 4548 tgctgtgctgagtgggtgcc 4567

>ref|NM_008664.1| Mus musculus myomesin 2 (Myom2), mRNA
          Length = 5074

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tgctgtgctgagtgggtgcc 141
            ||||||||||||||||||||
Sbjct: 4548 tgctgtgctgagtgggtgcc 4567

>gb|AC096629.11| Bos taurus clone rp42-152a4, complete sequence
          Length = 191756

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ggatctccatccctccctct 30
              ||||||||||||||||||||
Sbjct: 114936 ggatctccatccctccctct 114955

>gb|AC098686.11| Bos taurus clone rp42-146c17, complete sequence
          Length = 164686

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ggatctccatccctccctct 30
            ||||||||||||||||||||
Sbjct: 6597 ggatctccatccctccctct 6578

>dbj|AK142174.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330005G22 product:myomesin 2, full insert
            sequence
          Length = 4928

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tgctgtgctgagtgggtgcc 141
            ||||||||||||||||||||
Sbjct: 4524 tgctgtgctgagtgggtgcc 4543

>gb|AF039717.2| Caenorhabditis elegans cosmid R13H8, complete sequence
          Length = 19120

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  caccctccccttcttctcca 226
            ||||||||||||||||||||
Sbjct: 8828 caccctccccttcttctcca 8847

>gb|AY752935.1| Equus caballus insulin-like growth factor binding protein-6
           (IGFBP-6) mRNA, partial cds
          Length = 262

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 234 agctgctgcagcactgagtc 253
           ||||||||||||||||||||
Sbjct: 168 agctgctgcagcactgagtc 149

>gb|AY609440.1| Sus scrofa clone Clu_115877.scr.msk.p1.Contig1, mRNA sequence
          Length = 1334

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 116 gagggctgctgtgctgagtgggtg 139
           |||||| |||||||||||||||||
Sbjct: 977 gagggcagctgtgctgagtgggtg 954

>gb|CP000207.1| Drosophila melanogaster genomic scaffold 211000022280721
          Length = 230078

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ctgctagctgctgcagcact 248
             ||||||||||||||||||||
Sbjct: 63803 ctgctagctgctgcagcact 63822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,446,895
Number of Sequences: 3902068
Number of extensions: 3446895
Number of successful extensions: 77488
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77340
Number of HSP's gapped (non-prelim): 148
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)