>K0143_HUMAN (Q14156) Protein KIAA0143 (Fragment)|
          Length = 885

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
 Frame = +1

Query: 40  KLCEYAAKNPLRIPKIAKFLEQRSRKELRAAHLNYVKIITEAYSKLLFICKEQ-MAYFAI 216
           KL  YA   P ++ +I  +L +R  +++      YV I  EA  +LL  C  Q +  F  
Sbjct: 103 KLTFYAVSAPEKLDRIGSYLAERLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVE 162

Query: 217 SLVNVLTDLLESKQENIHILGCQTLARFIYSQVDN-TYARNIESLV 351
           S ++++  LLES +  + +LG  +  +F   + D  +Y R  +  V
Sbjct: 163 SFLHMVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFV 208

>KLHL4_HUMAN (Q9C0H6) Kelch-like protein 4|
          Length = 718

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +1

Query: 205 YFAISLVNVLTDLLESKQENIHILGCQ-----TLARFIYSQVDNTYARNIESLVHXVCTL 369
           YFA    N   D+LE+KQE + + G       +L ++ Y+ V       IESL+   C L
Sbjct: 206 YFAAMFTN---DVLEAKQEEVRMEGVDPNALNSLVQYAYTGVLQLKEDTIESLLAAACLL 262

Query: 370 SRQQGVE 390
              Q ++
Sbjct: 263 QLTQVID 269

>RNH3_LACLA (Q9CDG3) Ribonuclease HIII (EC 3.1.26.4) (RNase HIII)|
          Length = 292

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +1

Query: 40  KLCEYAAKNPLRIPKIAKFLEQRSRKELRAAHLNYVKIITEAYSKLLFICKEQMAY 207
           K+C+ A K   RIP +A  +E     E+ A+  N V I    +++ +++ ++Q+ +
Sbjct: 123 KICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGH 178

>DSCR6_HUMAN (P57055) Down syndrome critical region protein 6|
          Length = 190

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 ADGIFCHQPGERPYRPSGKQAGEHSYPW 278
           A G  CH PG+ P+RP   +  E   PW
Sbjct: 12  ARGRGCHCPGDAPWRPPPPRGPESPAPW 39

>SYFA_BUCAI (P57229) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 329

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +1

Query: 115 KELRAAHLNYV--KIITEAYSKLLFICKEQMAYFAISLVNVLTDLLESKQENIHILGCQT 288
           K +  ++L ++  K + + + K + I K + +YF  ++ +   D+++   +++ ILGC  
Sbjct: 216 KNINFSNLKWIIYKFLYDFFGKEVLI-KFRPSYFPFTVPSAEVDIIDHNGKSLEILGCGM 274

Query: 289 LARFIYSQVDNTYARNIESLVHXVC 363
           +   +   V      NI+S ++  C
Sbjct: 275 VHPNVLKNV------NIDSKIYSAC 293

>RFBG_SALTY (P26397) CDP-glucose 4,6-dehydratase (EC 4.2.1.45)|
          Length = 359

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 241 LLESKQENIHILGCQTLARFIYSQVDNTYARNIESLVHXVCTLSR 375
           + E K E +  +  Q L R  Y Q   TY+ N+   VH + T+ +
Sbjct: 76  IAEFKPEIVFHMAAQPLVRLSYEQPIETYSTNVMGTVHLLETVKQ 120

>CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1081

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 82  KIAKFLEQRSRKELRAAHLNYVK 150
           K  K+++QRS K+L AA L Y+K
Sbjct: 470 KTEKYMKQRSLKDLTAADLRYIK 492

>KLHL5_HUMAN (Q96PQ7) Kelch-like protein 5|
          Length = 755

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +1

Query: 205 YFAISLVNVLTDLLESKQENIHILGCQ-----TLARFIYSQVDNTYARNIESLVHXVCTL 369
           YFA    N   D+ E++QE I + G +     +L ++ Y+        NIE L+   C L
Sbjct: 244 YFAAMFTN---DVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLL 300

Query: 370 SRQQGVE 390
              Q VE
Sbjct: 301 QLSQVVE 307

>GLS3_YEAST (Q04952) 1,3-beta-glucan synthase component FKS3 (EC 2.4.1.34)|
           (1,3-beta-D-glucan-UDP glucosyltransferase)
          Length = 1785

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +1

Query: 142 YVKIITEAYSKLLFICKEQMAYFAISLVNVLTDLLESKQENIHILGCQTLARFIYSQVDN 321
           Y ++    YSK+L   +  + + A  L++ + + +       H+L  + L R ++ QVD+
Sbjct: 608 YSRLPKRIYSKILATSEMDVKFKAKILISQVWNAIVISMYREHLLSIEHLQRLLFQQVDS 667

>HYPA_ARCFU (O28904) Probable hydrogenase nickel incorporation protein hypA|
          Length = 110

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 267 NVLLLAFQKVGKDVHQADGKICHLLLTNEE*LAVCFS 157
           NVL  A +K  K V     ++  LLL N E L  CFS
Sbjct: 13  NVLRFAEEKQAKTVTSVRVRVGELLLINPEQLQFCFS 49

>DXR_SHIFL (Q83MD3) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 398

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 198 LLLTNEE*LAVCFSDYLDIVQMSSAQLL 115
           +LL N+E L  C   ++D V+ S AQLL
Sbjct: 120 ILLANKESLVTCGRLFMDAVKQSKAQLL 147

>DXR_ERWCT (Q6D8D9) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 398

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 198 LLLTNEE*LAVCFSDYLDIVQMSSAQLL 115
           +LL N+E L  C   ++D V+ S AQLL
Sbjct: 120 VLLANKESLVTCGRLFMDAVEQSDAQLL 147

>DXR_ECOLI (P45568) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 398

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 198 LLLTNEE*LAVCFSDYLDIVQMSSAQLL 115
           +LL N+E L  C   ++D V+ S AQLL
Sbjct: 120 ILLANKESLVTCGRLFMDAVKQSKAQLL 147

>DXR_ECO57 (Q8X8Y1) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 398

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 198 LLLTNEE*LAVCFSDYLDIVQMSSAQLL 115
           +LL N+E L  C   ++D V+ S AQLL
Sbjct: 120 ILLANKESLVTCGRLFMDAVKQSKAQLL 147

>PPT1_BOVIN (P45478) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)|
           (Palmitoyl-protein hydrolase 1)
          Length = 306

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 223 VNVLTDLLESKQENIHILGCQTLARFIYSQVDNTYARNIESLVHXVCTL 369
           +  +  ++E K   IH+L  + + + +   V+N++  N+ S V  VC +
Sbjct: 51  MGAIKKMVEKKIPGIHVLSLE-IGKTLREDVENSFFLNVNSQVTTVCQI 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,912,225
Number of Sequences: 219361
Number of extensions: 1219667
Number of successful extensions: 3161
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3161
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)