ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14f03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136H15, full insert sequence Length = 3559 Score = 416 bits (210), Expect = e-113 Identities = 353/401 (88%) Strand = Plus / Plus Query: 1 aagacgcctgagggccccccaaatgataggaaaatcatgaagttatgcgagtatgctgcc 60 ||||||||||| |||| |||||||| |||||||||||||||||||| || ||||| || Sbjct: 433 aagacgcctgatggccttccaaatgagaggaaaatcatgaagttatgtgaatatgcagcg 492 Query: 61 aagaatcccctgcgcattccaaagattgccaagtttctggaacagaggagtcgcaaggag 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 493 aagaatcccctgcgcattcctaagattgccaagtttctggaacagaggagtcacaaggag 552 Query: 121 ctgcgcgctgctcatctgaactatgtcaagataatcactgaagcatacagcaagctactc 180 || || |||||||| |||||| | |||| || |||||||| |||||||||||||||||| Sbjct: 553 ctacgttctgctcatgtgaactttatcaaaattatcactgaggcatacagcaagctactc 612 Query: 181 ttcatttgtaaggagcagatggcatattttgccatcagcctggtgaacgtccttaccgac 240 |||||||| |||||||| ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 613 ttcatttgcaaggagcaaatggcatattttgccattagcctggtgaatgttcttactgag 672 Query: 241 cttctggaaagcaagcaggagaacattcatatccttggatgtcaaactttagcgaggttt 300 || |||||||||||||| |||||||||||||| |||||||| |||||||| |||| |||| Sbjct: 673 ctcctggaaagcaagcaagagaacattcatattcttggatgccaaactttggcgaagttt 732 Query: 301 atttacagccaggtagacaacacatatgcacgaaatattgagagcttggtccacanagtg 360 ||||| |||||||| || ||||| |||||||| |||||||| |||||||| | || ||| Sbjct: 733 atttatagccaggtggataacacgtatgcacggaatattgaaagcttggttcgcaaagta 792 Query: 361 tgcacactttcacggcaacagggagtggagcatagtcttct 401 || || ||||||||||||||||||||||| |||||||| Sbjct: 793 tgtgtgctctcacggcaacagggagtggagcacagtcttct 833
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 141 bits (71), Expect = 2e-30 Identities = 104/115 (90%) Strand = Plus / Minus Query: 83 agattgccaagtttctggaacagaggagtcgcaaggagctgcgcgctgctcatctgaact 142 |||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||| Sbjct: 10949004 agattgccaagtttctggaacagaggagtcacaaggagctacgttctgctcatgtgaact 10948945 Query: 143 atgtcaagataatcactgaagcatacagcaagctactcttcatttgtaaggagca 197 | |||| || |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 10948944 ttatcaaaattatcactgaggcatacagcaagctactcttcatttgcaaggagca 10948890 Score = 131 bits (66), Expect = 2e-27 Identities = 102/114 (89%) Strand = Plus / Minus Query: 201 ggcatattttgccatcagcctggtgaacgtccttaccgaccttctggaaagcaagcagga 260 ||||||||||||||| ||||||||||| || ||||| || || |||||||||||||| || Sbjct: 10948781 ggcatattttgccattagcctggtgaatgttcttactgagctcctggaaagcaagcaaga 10948722 Query: 261 gaacattcatatccttggatgtcaaactttagcgaggtttatttacagccaggt 314 |||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| Sbjct: 10948721 gaacattcatattcttggatgccaaactttggcgaagtttatttatagccaggt 10948668 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 19 ccaaatgataggaaaatcatgaagttatgcgagtatgctgccaagaatcccctgcgcatt 78 |||||||| |||||||||||||||||||| || ||||| || |||||||||||||||||| Sbjct: 10949171 ccaaatgagaggaaaatcatgaagttatgtgaatatgcagcgaagaatcccctgcgcatt 10949112 Query: 79 cc 80 || Sbjct: 10949111 cc 10949110 Score = 65.9 bits (33), Expect = 9e-08 Identities = 77/92 (83%) Strand = Plus / Minus Query: 310 caggtagacaacacatatgcacgaaatattgagagcttggtccacanagtgtgcacactt 369 ||||| || ||||| |||||||| |||||||| |||||||| | || ||| || || Sbjct: 10948590 caggtggataacacgtatgcacggaatattgaaagcttggttcgcaaagtatgtgtgctc 10948531 Query: 370 tcacggcaacagggagtggagcatagtcttct 401 ||||||||||||||||||||||| |||||||| Sbjct: 10948530 tcacggcaacagggagtggagcacagtcttct 10948499
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 141 bits (71), Expect = 2e-30 Identities = 104/115 (90%) Strand = Plus / Plus Query: 83 agattgccaagtttctggaacagaggagtcgcaaggagctgcgcgctgctcatctgaact 142 |||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||| Sbjct: 32025 agattgccaagtttctggaacagaggagtcacaaggagctacgttctgctcatgtgaact 32084 Query: 143 atgtcaagataatcactgaagcatacagcaagctactcttcatttgtaaggagca 197 | |||| || |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 32085 ttatcaaaattatcactgaggcatacagcaagctactcttcatttgcaaggagca 32139 Score = 131 bits (66), Expect = 2e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 201 ggcatattttgccatcagcctggtgaacgtccttaccgaccttctggaaagcaagcagga 260 ||||||||||||||| ||||||||||| || ||||| || || |||||||||||||| || Sbjct: 32248 ggcatattttgccattagcctggtgaatgttcttactgagctcctggaaagcaagcaaga 32307 Query: 261 gaacattcatatccttggatgtcaaactttagcgaggtttatttacagccaggt 314 |||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| Sbjct: 32308 gaacattcatattcttggatgccaaactttggcgaagtttatttatagccaggt 32361 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 19 ccaaatgataggaaaatcatgaagttatgcgagtatgctgccaagaatcccctgcgcatt 78 |||||||| |||||||||||||||||||| || ||||| || |||||||||||||||||| Sbjct: 31858 ccaaatgagaggaaaatcatgaagttatgtgaatatgcagcgaagaatcccctgcgcatt 31917 Query: 79 cc 80 || Sbjct: 31918 cc 31919 Score = 65.9 bits (33), Expect = 9e-08 Identities = 77/92 (83%) Strand = Plus / Plus Query: 310 caggtagacaacacatatgcacgaaatattgagagcttggtccacanagtgtgcacactt 369 ||||| || ||||| |||||||| |||||||| |||||||| | || ||| || || Sbjct: 32439 caggtggataacacgtatgcacggaatattgaaagcttggttcgcaaagtatgtgtgctc 32498 Query: 370 tcacggcaacagggagtggagcatagtcttct 401 ||||||||||||||||||||||| |||||||| Sbjct: 32499 tcacggcaacagggagtggagcacagtcttct 32530
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 141 bits (71), Expect = 2e-30 Identities = 104/115 (90%) Strand = Plus / Minus Query: 83 agattgccaagtttctggaacagaggagtcgcaaggagctgcgcgctgctcatctgaact 142 |||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||| Sbjct: 10947105 agattgccaagtttctggaacagaggagtcacaaggagctacgttctgctcatgtgaact 10947046 Query: 143 atgtcaagataatcactgaagcatacagcaagctactcttcatttgtaaggagca 197 | |||| || |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 10947045 ttatcaaaattatcactgaggcatacagcaagctactcttcatttgcaaggagca 10946991 Score = 131 bits (66), Expect = 2e-27 Identities = 102/114 (89%) Strand = Plus / Minus Query: 201 ggcatattttgccatcagcctggtgaacgtccttaccgaccttctggaaagcaagcagga 260 ||||||||||||||| ||||||||||| || ||||| || || |||||||||||||| || Sbjct: 10946882 ggcatattttgccattagcctggtgaatgttcttactgagctcctggaaagcaagcaaga 10946823 Query: 261 gaacattcatatccttggatgtcaaactttagcgaggtttatttacagccaggt 314 |||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| Sbjct: 10946822 gaacattcatattcttggatgccaaactttggcgaagtttatttatagccaggt 10946769 Score = 83.8 bits (42), Expect = 4e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 19 ccaaatgataggaaaatcatgaagttatgcgagtatgctgccaagaatcccctgcgcatt 78 |||||||| |||||||||||||||||||| || ||||| || |||||||||||||||||| Sbjct: 10947272 ccaaatgagaggaaaatcatgaagttatgtgaatatgcagcgaagaatcccctgcgcatt 10947213 Query: 79 cc 80 || Sbjct: 10947212 cc 10947211 Score = 65.9 bits (33), Expect = 9e-08 Identities = 77/92 (83%) Strand = Plus / Minus Query: 310 caggtagacaacacatatgcacgaaatattgagagcttggtccacanagtgtgcacactt 369 ||||| || ||||| |||||||| |||||||| |||||||| | || ||| || || Sbjct: 10946691 caggtggataacacgtatgcacggaatattgaaagcttggttcgcaaagtatgtgtgctc 10946632 Query: 370 tcacggcaacagggagtggagcatagtcttct 401 ||||||||||||||||||||||| |||||||| Sbjct: 10946631 tcacggcaacagggagtggagcacagtcttct 10946600
>gb|AF347685.1|AF347681S6 Mus musculus chloride channel (Clcn3) gene, exon 11 Length = 1470 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 148 aagataatcactgaagcataca 169 |||||||||||||||||||||| Sbjct: 1144 aagataatcactgaagcataca 1123
>gb|AC159302.3| Mus musculus BAC clone RP23-238C13 from chromosome 8, complete sequence Length = 183988 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 aagataatcactgaagcataca 169 |||||||||||||||||||||| Sbjct: 1016 aagataatcactgaagcataca 1037
>gb|AC114920.7| Mus musculus BAC clone RP23-197N18 from 8, complete sequence Length = 195042 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 aagataatcactgaagcataca 169 |||||||||||||||||||||| Sbjct: 130730 aagataatcactgaagcataca 130751
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 aaatcatgaagttatgcgag 51 |||||||||||||||||||| Sbjct: 2869548 aaatcatgaagttatgcgag 2869567
>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a nicotinamide nucleotide adenylyltransferase 1 (NMNAT1) pseudogene and a high-mobility group box 3 (HMGB3) pseudogene, complete sequence Length = 184024 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gaactatgtcaagataatca 157 |||||||||||||||||||| Sbjct: 148782 gaactatgtcaagataatca 148763
>gb|AC161001.4| Mus musculus BAC clone RP23-30A18 from chromosome 14, complete sequence Length = 215474 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgataggaaaatcatgaagt 43 |||||||||||||||||||| Sbjct: 64250 tgataggaaaatcatgaagt 64269
>gb|DQ397572.1| Cenarchaeum symbiosum clone C09A12, complete sequence Length = 43887 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 attgccaagtttctggaacagagg 108 |||||||||||||||||| ||||| Sbjct: 20542 attgccaagtttctggaaaagagg 20519
>gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, complete sequence Length = 179582 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 acattcatatccttggatgtcaaa 286 |||||||||| ||||||||||||| Sbjct: 38642 acattcatatgcttggatgtcaaa 38619
>gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence Length = 149030 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 aacacatatgcacgaaatat 338 |||||||||||||||||||| Sbjct: 111979 aacacatatgcacgaaatat 111960
>emb|CT025646.19| Mouse DNA sequence from clone RP24-289L23 on chromosome 13, complete sequence Length = 11016 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 tatttacagccaggtagaca 319 |||||||||||||||||||| Sbjct: 2150 tatttacagccaggtagaca 2131 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,327,806 Number of Sequences: 3902068 Number of extensions: 3327806 Number of successful extensions: 59593 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59486 Number of HSP's gapped (non-prelim): 107 length of query: 401 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 379 effective length of database: 17,147,199,772 effective search space: 6498788713588 effective search space used: 6498788713588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
