>YDFC_SCHPO (Q10484) Hypothetical protein C17C9.12 in chromosome I|
          Length = 319

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 27  PSTLTLNHTETPSPLLVPRTRPTNCPSFAHTLPIMS*SVRLPRLYIYPHVIVVATS 194
           PST T  HT+ P    V   +P   PS A   P  + +   P  Y  P  +   TS
Sbjct: 184 PSTATTQHTQLPKTSAVSHQKPHEAPSTAVKAPTATVAENEP--YPKPQSVPTTTS 237

>CAND1_RAT (P97536) Cullin-associated NEDD8-dissociated protein 1|
           (Cullin-associated and neddylation-dissociated protein
           1) (p120 CAND1) (TBP-interacting protein TIP120A)
           (TBP-interacting protein of 120 kDa A)
          Length = 1230

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   LLLNFHPSTLTLNHTETPSPLLVPRTR 89
           LL+NFHPS LT    +  SP L  R R
Sbjct: 168 LLVNFHPSILTCLLPQLTSPRLAVRKR 194

>CAND1_PONPY (Q5R6L5) Cullin-associated NEDD8-dissociated protein 1|
           (Cullin-associated and neddylation-dissociated protein
           1) (p120 CAND1)
          Length = 1230

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   LLLNFHPSTLTLNHTETPSPLLVPRTR 89
           LL+NFHPS LT    +  SP L  R R
Sbjct: 168 LLVNFHPSILTCLLPQLTSPRLAVRKR 194

>CAND1_MOUSE (Q6ZQ38) Cullin-associated NEDD8-dissociated protein 1|
           (Cullin-associated and neddylation-dissociated protein
           1) (p120 CAND1)
          Length = 1230

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   LLLNFHPSTLTLNHTETPSPLLVPRTR 89
           LL+NFHPS LT    +  SP L  R R
Sbjct: 168 LLVNFHPSILTCLLPQLTSPRLAVRKR 194

>CAND1_HUMAN (Q86VP6) Cullin-associated NEDD8-dissociated protein 1|
           (Cullin-associated and neddylation-dissociated protein
           1) (p120 CAND1) (TBP-interacting protein TIP120A)
           (TBP-interacting protein of 120 kDa A)
          Length = 1230

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   LLLNFHPSTLTLNHTETPSPLLVPRTR 89
           LL+NFHPS LT    +  SP L  R R
Sbjct: 168 LLVNFHPSILTCLLPQLTSPRLAVRKR 194

>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region|
          Length = 153

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
 Frame = +3

Query: 24  HPSTLTLNHTETPSP-------LLVPRTRPTNCPSFAHT--LPIMS*SVRLPRLY 161
           HP T T  H  TP+P          P T PT  P   HT    + + S+ LP  Y
Sbjct: 29  HPHTPTHTHPHTPTPTPHPHPHTPHPHTTPTPTPHHTHTPHTTLSNLSLNLPSHY 83

>DOT6_YEAST (P40059) Disrupter of telomere silencing protein 6|
          Length = 670

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 14  P*FPSIHTY-P*PHRNSISSSCTTHQTNQLSIFCPHS 121
           P FP+ +T+   PH +S+SSS T H++ + S F  HS
Sbjct: 393 PIFPNSYTFMDLPHSSSVSSSSTLHKSKRGS-FSGHS 428

>CAR2_DICDI (P34907) Cyclic AMP receptor 2 (cAMP receptor 2)|
          Length = 375

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 83  HQTNQLSIFCPHSSNHVLISKATTLIYIPTRNCSGY 190
           H T  +S+FC  S    +IS   TL+Y P +  SG+
Sbjct: 41  HITKIISLFCATSLFKDVISTIITLLYKPDQTESGF 76

>NDVB_RHIME (P20471) Protein ndvB|
          Length = 2832

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 45   NHTETPSPLLVPRTRPTN 98
            N  ETP P+L  RT PTN
Sbjct: 1025 NFQETPQPVLAERTSPTN 1042

>CHSTD_HUMAN (Q8NET6) Carbohydrate sulfotransferase 13 (EC 2.8.2.5) (Chondroitin|
           4-O-sulfotransferase 3) (Chondroitin 4-sulfotransferase
           3) (C4ST3) (C4ST-3)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 53  RNSISSSCTTHQTNQLSIFCPHSSNHVLISKATTLI--YIPTRNCSGYE 193
           R+ ++S+C+ H   Q  +  P    HVL+  A  L+  Y+P   C+ ++
Sbjct: 74  RDLLNSACSRHSRRQ-RLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWK 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,399,967
Number of Sequences: 219361
Number of extensions: 958470
Number of successful extensions: 3052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3046
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)