ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl14f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG 66 2e-11
2YQKA_SCHPO (O74522) Protein C1494.10 in chromosome III 33 0.13
3CH60_COXBU (P19421) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 28 7.1

>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG|
          Length = 931

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 29/41 (70%), Positives = 37/41 (90%)
 Frame = +3

Query: 246 QDSWDADKILDVYIHDYLVKRNLQSTAKAFQAESNLSPDPV 368
           Q +W+ADK+LDVYIHDYLVKR+L++TA+AFQAE  +S DPV
Sbjct: 3   QTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPV 43



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>YQKA_SCHPO (O74522) Protein C1494.10 in chromosome III|
          Length = 964

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 273 LDVYIHDYLVKRNLQSTAKAFQAESNL 353
           LD YI+DY VK N +  A+AF  ES +
Sbjct: 38  LDYYIYDYFVKHNFEEAAQAFLRESKI 64



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>CH60_COXBU (P19421) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat|
           shock protein B)
          Length = 552

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 341 GLERLRSALQVPLHQVVMDVHIQDLVCVPRILRH 240
           G+E  R A+  PL Q+V +  +Q  V   ++L H
Sbjct: 439 GVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNH 472


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,528,540
Number of Sequences: 219361
Number of extensions: 487498
Number of successful extensions: 1186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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