ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14e09 |
|---|---|
| Clone Library Name | barley_pub |
>BCAS3_MOUSE (Q8CCN5) Breast carcinoma amplified sequence 3 homolog (K20D4)| Length = 928 Score = 57.8 bits (138), Expect = 1e-08 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Frame = +3 Query: 105 VRFYSLKSHTYVHVLRFRSAVYIVRCSPRVVAVALAAQIYCFDAVTLENKLSVLS-YPLQ 281 V YSL++ V ++F++ +Y + C+ R++ V L +I FD+ T K V S YP Sbjct: 167 VDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYP-- 224 Query: 282 GAPGANIGYGPMSVGSRWLAYA 347 PG N+ P+++GSRWLAYA Sbjct: 225 -CPGPNM--NPIALGSRWLAYA 243
>BCAS3_HUMAN (Q9H6U6) Breast carcinoma amplified sequence 3 (GAOB1) (Maab1| protein) Length = 928 Score = 57.8 bits (138), Expect = 1e-08 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Frame = +3 Query: 105 VRFYSLKSHTYVHVLRFRSAVYIVRCSPRVVAVALAAQIYCFDAVTLENKLSVLS-YPLQ 281 V YSL++ V ++F++ +Y + C+ R++ V L +I FD+ T K V S YP Sbjct: 167 VDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYP-- 224 Query: 282 GAPGANIGYGPMSVGSRWLAYA 347 PG N+ P+++GSRWLAYA Sbjct: 225 -CPGPNM--NPIALGSRWLAYA 243
>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein| 5.6) (Ultrahigh sulfur keratin-associated protein 5.6) Length = 129 Score = 29.6 bits (65), Expect = 3.3 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +2 Query: 137 CTCSQIPICR-IYSSLQPPGCGCSTCSTNLLL*CCNS*EQAQCPV 268 C CSQ C+ Y S GCG S C ++ CC+ QA C V Sbjct: 83 CGCSQCSCCKPCYCS---SGCGSSCCQSSCCKPCCS---QASCCV 121
>S6A16_HUMAN (Q9GZN6) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT5 (Solute carrier family 6 member 16) Length = 736 Score = 29.6 bits (65), Expect = 3.3 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Frame = +3 Query: 69 PQTGNCISTP---TVVRFYSLKSHTYVH--VLRFRSAVYIVRCSPRVVAVALAAQIYCFD 233 PQ+ NC+S +V+ +L T + VL F + V RC R + Sbjct: 365 PQSNNCLSDAFLVSVINLLTLLVFTSFNFCVLGFWATVITHRCCER-------------N 411 Query: 234 AVTLENKLSVLSYPLQGAPGANIGYGPMSVGSRWLAYAP 350 A L +++ P P N+ Y P S+ + WL+ P Sbjct: 412 AEILLKLINLGKLPPDAKPPVNLLYNPTSIYNAWLSGLP 450
>CAPZA_XENLA (P25229) Actin-binding protein chain A (ABP-A) (Fragment)| Length = 256 Score = 29.3 bits (64), Expect = 4.3 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Frame = -1 Query: 263 DTELVLKSYSIKAVDLCCKCY--SHNPGAATNYIYGRS--ESENMYICVRLQRVEANNCW 96 D+++ LKS+ A DL + Y H P +YG++ + + C+ + + N W Sbjct: 82 DSDVALKSWR-DACDLALRAYVKEHYPNGVCT-VYGKTIDGQQTIVSCIESHQFQPKNFW 139 Query: 95 GGNAVSSLRFT 63 G S +FT Sbjct: 140 NGRWRSEWKFT 150
>PIPA_DICDI (Q02158) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| (EC 3.1.4.11) (PLC) (Phosphoinositide phospholipase C) Length = 801 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -3 Query: 138 HMCETSKSRSEQLLGWKCSFQFEVHCLYP**VHLSDH 28 H+CET K+R + + EVHC P + +++H Sbjct: 394 HVCETIKARGFETSPYPVILSLEVHCSVPQQIMMANH 430
>CAZA1_CHICK (P13127) F-actin capping protein alpha-1 subunit (CapZ 36/32)| (Beta-actinin subunit I) Length = 286 Score = 29.3 bits (64), Expect = 4.3 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Frame = -1 Query: 266 QDTELVLKSYSIKAVDLCCKCY--SHNPGAATNYIYGRS--ESENMYICVRLQRVEANNC 99 +DTE LK + A D + Y H P +YG+S + + C+ + + N Sbjct: 111 EDTESALKQWR-DACDSALRAYVKDHYPNGFCT-VYGKSIDGQQTIIACIESHQFQPKNF 168 Query: 98 WGGNAVSSLRFTACIP 51 W G S +FT P Sbjct: 169 WNGRWRSEWKFTITPP 184
>CILB_KLEPN (P17725) Citrate lyase beta chain (EC 4.1.3.6) (Citrase beta chain)| (Citrate (pro-3S)-lyase beta chain) (Citryl-CoA lyase subunit) (EC 4.1.3.34) Length = 289 Score = 29.3 bits (64), Expect = 4.3 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +3 Query: 159 SAVYIVRCSPRVVAVALAAQIYCFDAVTLENKLSVLSY 272 +AV I R SPR+ A+ALAA Y D T + L Y Sbjct: 136 NAVEIARASPRLAAIALAAFDYVMDMGTSRGDGTELFY 173
>SSUD_XANAC (Q8PP38) Alkanesulfonate monooxygenase (EC 1.14.14.5)| (FMNH2-dependent aliphatic sulfonate monooxygenase) Length = 387 Score = 28.9 bits (63), Expect = 5.7 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = +3 Query: 141 HVLRFRSAVYIVRCSPRVVAVALAAQIYCFDAVTLENKLSVLSYPLQGAPGANIGYGPMS 320 H R+ ++ +R ++A + + + Y FD L+ K + L YP P + +G S Sbjct: 123 HAERYEASAEFIRIWREIIAHSHSGESYDFDGKHLQVKAAKLLYPTVQRPYPPVWFGGSS 182 Query: 321 VGSRWLA 341 + LA Sbjct: 183 DAAHDLA 189
>ATG18_MAGGR (Q524W4) Autophagy-related protein 18| Length = 469 Score = 28.9 bits (63), Expect = 5.7 Identities = 24/86 (27%), Positives = 39/86 (45%) Frame = +3 Query: 87 ISTPTVVRFYSLKSHTYVHVLRFRSAVYIVRCSPRVVAVALAAQIYCFDAVTLENKLSVL 266 I +P + + K + + L F SAV VR + + +AV L +IY +D + ++ Sbjct: 60 ILSPRHLIIQNTKRGSVICELTFPSAVLAVRLNRKRLAVVLEDEIYLYDIANMSLLFTIA 119 Query: 267 SYPLQGAPGANIGYGPMSVGSRWLAY 344 + P P A P S +LAY Sbjct: 120 TSP---NPSAICALSPSSENC-FLAY 141
>UHRF1_MOUSE (Q8VDF2) Ubiquitin-like PHD and RING finger domain-containing| protein 1 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Nuclear zinc finger protein Np95) (Nuclear protein 95) Length = 782 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -3 Query: 138 HMCETSKSRSEQLLGWKCSFQFEVHCLYP**VHLSDHPE-PCPS 10 H+C ++ +QLL +C F ++CL P + PE CPS Sbjct: 324 HVCGGREAPEKQLLCDECDMAFHLYCLKPPLTSVPPEPEWYCPS 367
>MBNL_HUMAN (Q9NR56) Muscleblind-like protein (Triplet-expansion RNA-binding| protein) Length = 388 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 363 NTGPWEHKLTTLNQQTLDHTQCLPQVPLVKDKT 265 NTG ++++ N Q HT LP VP+V T Sbjct: 314 NTGIFQYQQALANMQLQQHTAFLPPVPMVHGAT 346
>MTA_THECR (P52721) Metallothionein A (MT-A)| Length = 60 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +2 Query: 137 CTCSQIPICRIYSSLQPPGCGCSTCSTNLLL*CC 238 C CS+ C+ S + C C+TC + CC Sbjct: 4 CECSKTGTCKCGDSCKCTNCSCTTCKKS----CC 33
>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein| 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) Length = 288 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +2 Query: 137 CTCSQIPICRIYSSLQPPGCGCSTCSTNLLL*CCNS 244 C CSQ C+ GCG S C ++ CC+S Sbjct: 194 CGCSQCSCCK--PCCCSSGCGSSCCQSSCCKPCCSS 227
>FBX24_MOUSE (Q9D417) F-box only protein 24| Length = 589 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 179 LQPPGCGCSTCSTNLLL*CCNS*EQAQCPV 268 ++ P C CS CST L +S + QCPV Sbjct: 468 IKVPLCACSLCSTRECLYMLSSHDIEQCPV 497
>ATG18_YEAST (P43601) Autophagy-related protein 18 (Cytoplasm to vacuole| targeting protein 18) (Swollen vacuole phenotype protein 1) (Needed for premeiotic replication protein 1) Length = 500 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/84 (23%), Positives = 40/84 (47%) Frame = +3 Query: 93 TPTVVRFYSLKSHTYVHVLRFRSAVYIVRCSPRVVAVALAAQIYCFDAVTLENKLSVLSY 272 +P +R + K H+ + + F +++ V+ + + V L QIY +D T+ ++ + Sbjct: 71 SPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETN 130 Query: 273 PLQGAPGANIGYGPMSVGSRWLAY 344 P P + P SV + +L Y Sbjct: 131 P---NPRGLMAMSP-SVANSYLVY 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,416,191 Number of Sequences: 219361 Number of extensions: 1501025 Number of successful extensions: 4044 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4034 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
