ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14e05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_195204.1| Oryza sativa (japonica cultivar-group) putative proton pump (OSJNBa0029P16.14), mRNA Length = 2352 Score = 75.8 bits (38), Expect = 5e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| |||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 22 tgctgcccgtcgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 81 Query: 210 cc 211 || Sbjct: 82 cc 83
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 5e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| ||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 7953549 tgctgcccgccgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 7953608 Query: 210 cccaccgagt 219 ||||| |||| Sbjct: 7953609 cccacggagt 7953618
>gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P16, complete sequence Length = 173644 Score = 75.8 bits (38), Expect = 5e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| |||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 112049 tgctgcccgtcgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 111990 Query: 210 cc 211 || Sbjct: 111989 cc 111988
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 75.8 bits (38), Expect = 5e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| |||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 5431599 tgctgcccgtcgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 5431658 Query: 210 cc 211 || Sbjct: 5431659 cc 5431660
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 5e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| ||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 7951384 tgctgcccgccgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 7951443 Query: 210 cccaccgagt 219 ||||| |||| Sbjct: 7951444 cccacggagt 7951453
>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0081I10, complete sequence Length = 143298 Score = 75.8 bits (38), Expect = 5e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| ||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 20912 tgctgcccgccgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 20971 Query: 210 cccaccgagt 219 ||||| |||| Sbjct: 20972 cccacggagt 20981
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04, complete sequence Length = 153431 Score = 75.8 bits (38), Expect = 5e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| ||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 139147 tgctgcccgccgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 139206 Query: 210 cccaccgagt 219 ||||| |||| Sbjct: 139207 cccacggagt 139216
>dbj|AK119298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E09, full insert sequence Length = 3025 Score = 75.8 bits (38), Expect = 5e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| ||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 219 tgctgcccgccgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 278 Query: 210 cccaccgagt 219 ||||| |||| Sbjct: 279 cccacggagt 288
>dbj|AK101151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027C12, full insert sequence Length = 3018 Score = 75.8 bits (38), Expect = 5e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| ||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 212 tgctgcccgccgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 271 Query: 210 cccaccgagt 219 ||||| |||| Sbjct: 272 cccacggagt 281
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 75.8 bits (38), Expect = 5e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 150 tgctgcccctcgatggatctgatgcggccggaggcgatgcatctcctgcaggtcattatc 209 |||||||| |||||||||||||||||| ||||||||||||| || |||||||||| ||| Sbjct: 5432386 tgctgcccgtcgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatc 5432445 Query: 210 cc 211 || Sbjct: 5432446 cc 5432447
>ref|XM_518361.1| PREDICTED: Pan troglodytes similar to Valyl-tRNA synthetase 2 (LOC462568), mRNA Length = 2136 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 76 ggggccgcgcggctcgccgcccgcc 52
>gb|AF134726.1| Homo sapiens BAC clone 215O12 NG35, NG36, G9A, NG22, G9, HSP70-2, HSP70-1, HSP70-HOM, snRNP, G7A, NG37, NG23, and MutSH5 genes, complete cds Length = 180283 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 122352 ggggccgcgcggctcgccgcccgcc 122328
>ref|NM_006295.2| Homo sapiens valyl-tRNA synthetase (VARS), mRNA Length = 4308 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 115 ggggccgcgcggctcgccgcccgcc 91
>emb|AL929592.8| Human DNA sequence from clone DAQB-147D11 on chromosome 6 Contains the 5' end of the VARS2 gene for valyl-tRNA synthetase 2, the LSM2 gene for the LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) factor, the HSPA1L gene for the heat shock 10kDa protein 1-like factor, the HSPA1A gene for the heat shock 70kDa protein 1A, the HSPA1B gene for the heat shock 70kDa protein 1B, the C6orf48 gene for chromosome 6 open reading frame 48, and 4 CpG islands, complete sequence Length = 59836 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 7637 ggggccgcgcggctcgccgcccgcc 7661
>emb|AL671762.10| Human DNA sequence from clone XXbac-254B15 on chromosome 6 contains the 5' end of the VARS2 gene for valyl-tRNA synthetase 2, the gene for chromosome 6 open reading frame 28, the HSPA1L gene for heat shock 70kDa protein 1-like, the HSPA1A gene for heat shock 70kDa protein 1A, the HSPA1B gene for heat shock 70kDa protein 1B, the gene for chromosome 6 open reading frame 48, the NEU1 gene for sialidase 1 (lysosomal sialidase), the gene forchromosome 6 open reading frame 29, the gene for HLA-B associated transcript 8, the gene for chromosome 6 open reading frame 46 and eight CpG islands, complete sequence Length = 113582 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 3669 ggggccgcgcggctcgccgcccgcc 3693
>emb|AL662834.8| Human DNA sequence from clone XXbac-40G17 on chromosome 6 contains the MSH5 gene for mutS homolog 5 (e. coli), the gene for NG23 protein, the gene for chromosome 6 open reading frame 27, the VARS2 gene for valyl-tRNA synthetase 2, the gene for chromosome 6 open reading frame 28, the HSPA1L gene for heat shock 70kDa protein 1-like, the HSPA1A gene for heat shock 70kDa protein 1A, the HSPA1B gene for heat shock 70kDa protein 1B, the gene for chromosome 6 open reading frame 48, the NEU1 gene for sialidase 1 (lysosomal sialidase), the gene for chromosome 6 open reading frame 29, the BAT8 gene for HLA-B associated transcript 8, the gene for chromosome 6 open reading frame 46 and nine CpG islands, complete sequence Length = 179894 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 59695 ggggccgcgcggctcgccgcccgcc 59719
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cgccgcgggcctgcacgccat 130 ||||||||||||||||||||| Sbjct: 158710 cgccgcgggcctgcacgccat 158730
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Plus Query: 48 cgcgctgctcgccgcccgcccatcc 72 |||| |||||||||||||||||||| Sbjct: 938592 cgcgttgctcgccgcccgcccatcc 938616
>emb|CR925765.2| Human DNA sequence from clone DADB-149K5 on chromosome 6, complete sequence Length = 57997 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 44898 ggggccgcgcggctcgccgcccgcc 44922
>emb|CR759915.6| Human DNA sequence from clone DAAP-21F2 on chromosome 6, complete sequence Length = 85491 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 40866 ggggccgcgcggctcgccgcccgcc 40890
>emb|CR759787.4| Human DNA sequence from clone DAMC-117B11 on chromosome 6, complete sequence Length = 113650 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 102447 ggggccgcgcggctcgccgcccgcc 102471
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 148199 ggggccgcgcggctcgccgcccgcc 148175
>emb|AL935270.6| Mouse DNA sequence from clone RP23-391A14 on chromosome 2, complete sequence Length = 127274 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 cctctcgccccctccctgctc 22 ||||||||||||||||||||| Sbjct: 40979 cctctcgccccctccctgctc 40959
>emb|AL132713.11|HSDJ71I17 Human DNA sequence from clone RP1-71I17 on chromosome 6p21.2-22.1, complete sequence Length = 163682 Score = 42.1 bits (21), Expect = 0.71 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 ggggccgcgctgctcgccgcccgcc 67 |||||||||| |||||||||||||| Sbjct: 15914 ggggccgcgcggctcgccgcccgcc 15890
>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence Length = 197843 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 tcggggccgcgctgctcgccgccc 64 |||||||||||| ||||||||||| Sbjct: 109278 tcggggccgcgccgctcgccgccc 109301
>gb|AY771996.1| Homo sapiens interleukin 12 receptor, beta 1 (IL12RB1) gene, complete cds Length = 30584 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 cctctcgccccctccctgct 21 |||||||||||||||||||| Sbjct: 3294 cctctcgccccctccctgct 3275
>ref|XM_428696.1| PREDICTED: Gallus gallus similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 (LOC431146), partial mRNA Length = 484 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ccgcgctgctcgccgcccgc 66 |||||||||||||||||||| Sbjct: 129 ccgcgctgctcgccgcccgc 110
>ref|XM_614019.2| PREDICTED: Bos taurus similar to meteorin, glial cell differentiation regulator-like (LOC534297), mRNA Length = 2750 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gccgcccgcccatccccgcc 77 |||||||||||||||||||| Sbjct: 1200 gccgcccgcccatccccgcc 1181
>emb|Y18000.1|HSAY18000 Homo sapiens NF2 gene Length = 126138 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ccgcgctgctcgccgcccgc 66 |||||||||||||||||||| Sbjct: 124587 ccgcgctgctcgccgcccgc 124568
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 gccgcgctgctcgccgcccg 65 |||||||||||||||||||| Sbjct: 1159852 gccgcgctgctcgccgcccg 1159833
>gb|AC004882.3| Homo sapiens PAC clone RP1-76B20 from 22, complete sequence Length = 171682 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ccgcgctgctcgccgcccgc 66 |||||||||||||||||||| Sbjct: 66710 ccgcgctgctcgccgcccgc 66691
>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence Length = 148824 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cctctcgccccctccctgct 21 |||||||||||||||||||| Sbjct: 131304 cctctcgccccctccctgct 131323
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gcacgccatggcgcgcatcg 141 |||||||||||||||||||| Sbjct: 868656 gcacgccatggcgcgcatcg 868675
>gb|AF043491.1|AF043491 Oryctolagus cuniculus prostaglandin E2 receptor subtype EP1 mRNA, partial cds Length = 781 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggccgcgctgctcgccgccc 64 |||||||||||||||||||| Sbjct: 67 ggccgcgctgctcgccgccc 86
>gb|AC005529.7| Homo sapiens chromosome 22 clone bk256d12 map 22q12, complete sequence Length = 318488 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ccgcgctgctcgccgcccgc 66 |||||||||||||||||||| Sbjct: 247967 ccgcgctgctcgccgcccgc 247948
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 atcggggccgcgctgctcgccgcc 63 |||||| ||||||||||||||||| Sbjct: 8444514 atcgggtccgcgctgctcgccgcc 8444491
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggccgcgctgctcgccgccc 64 |||||||||||||||||||| Sbjct: 2006866 ggccgcgctgctcgccgccc 2006885
>ref|XM_236613.3| PREDICTED: Rattus norvegicus similar to hypothetical protein (predicted) (LOC315988), mRNA Length = 2628 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gcgctgctcgccgcccgccc 68 |||||||||||||||||||| Sbjct: 115 gcgctgctcgccgcccgccc 96
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 gggccgcgctgctcgccgcc 63 |||||||||||||||||||| Sbjct: 4225959 gggccgcgctgctcgccgcc 4225940
>emb|X89531.1|EV1VP2GEN Echovirus 1 DNA for 5'UTR and VP2 capsid protein gene Length = 1412 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cgcgggcctgcacgccatgg 132 |||||||||||||||||||| Sbjct: 1137 cgcgggcctgcacgccatgg 1118 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,208,964 Number of Sequences: 3902068 Number of extensions: 1208964 Number of successful extensions: 103515 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101681 Number of HSP's gapped (non-prelim): 1834 length of query: 219 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 197 effective length of database: 17,147,199,772 effective search space: 3377998355084 effective search space used: 3377998355084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
